Wall clock time and date at job start Tue Mar 31 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 102.99748 * 2 1 4 4 H 1.09002 * 109.47085 * 304.99913 * 3 2 1 5 5 C 1.50699 * 109.47307 * 64.99805 * 3 2 1 6 6 O 1.21285 * 119.99802 * 89.99740 * 5 3 2 7 7 N 1.34779 * 120.00283 * 270.00144 * 5 3 2 8 8 C 1.46500 * 120.00165 * 179.97438 * 7 5 3 9 9 C 1.50700 * 109.47003 * 179.97438 * 8 7 5 10 10 O 1.21296 * 119.99857 * 0.02562 * 9 8 7 11 11 N 1.34770 * 119.99931 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00253 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99879 * 0.02562 * 12 11 9 14 14 C 1.38949 * 120.00460 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99933 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00140 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46944 * 90.00187 * 16 14 12 18 18 H 1.48499 * 109.46844 * 209.99826 * 16 14 12 19 19 H 1.48499 * 109.47024 * 329.99813 * 16 14 12 20 20 C 1.50703 * 109.47002 * 184.99973 * 3 2 1 21 21 C 1.38237 * 119.99747 * 299.72322 * 20 3 2 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 3 23 23 C 1.38236 * 119.99657 * 0.39831 * 22 21 20 24 24 C 1.38230 * 120.00403 * 359.85459 * 23 22 21 25 25 C 1.38232 * 120.00112 * 119.99873 * 20 3 2 26 26 H 1.09004 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47383 * 299.99806 * 1 2 3 28 28 H 1.09000 * 109.47141 * 60.00464 * 1 2 3 29 29 H 0.96997 * 119.99431 * 359.97438 * 7 5 3 30 30 H 1.09000 * 109.46920 * 300.00263 * 8 7 5 31 31 H 1.09004 * 109.46553 * 59.99984 * 8 7 5 32 32 H 0.96999 * 119.99945 * 0.02562 * 11 9 8 33 33 H 0.96994 * 120.00289 * 180.02562 * 15 14 12 34 34 H 1.08003 * 120.00234 * 0.02562 * 21 20 3 35 35 H 1.07995 * 119.99993 * 180.23158 * 22 21 20 36 36 H 1.08005 * 119.99783 * 179.83592 * 23 22 21 37 37 H 1.08000 * 120.00473 * 179.97438 * 24 23 22 38 38 H 1.08005 * 119.99991 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7293 2.2541 -0.8418 5 6 1.7498 2.3921 1.2876 6 8 2.4874 2.4293 2.2497 7 7 0.5080 2.9093 1.3702 8 6 0.0488 3.5159 2.6222 9 6 -1.3630 4.0144 2.4507 10 8 -1.9300 3.8760 1.3874 11 7 -1.9955 4.6139 3.4787 12 6 -3.2796 5.0678 3.3226 13 1 -3.7846 4.9446 2.3758 14 6 -3.9320 5.6854 4.3826 15 7 -3.3178 5.8349 5.5348 16 14 -5.6820 6.3033 4.1700 17 1 -6.6354 5.2252 4.5359 18 1 -5.9023 7.4786 5.0505 19 1 -5.8994 6.6972 2.7548 20 6 3.7141 1.9386 -0.1238 21 6 4.5529 1.4071 0.8379 22 6 5.9219 1.5607 0.7222 23 6 6.4515 2.2529 -0.3508 24 6 5.6124 2.7889 -1.3096 25 6 4.2437 2.6320 -1.1960 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.0817 2.8798 0.6006 30 1 0.0778 2.7721 3.4184 31 1 0.6997 4.3511 2.8813 32 1 -1.5418 4.7248 4.3289 33 1 -3.7733 6.2657 6.2749 34 1 4.1389 0.8688 1.6777 35 1 6.5774 1.1422 1.4716 36 1 7.5209 2.3751 -0.4397 37 1 6.0262 3.3300 -2.1477 38 1 3.5881 3.0507 -1.9453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343552474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:24 Heat of formation + Delta-G solvation = -49.542640 kcal Electronic energy + Delta-G solvation = -22183.437508 eV Core-core repulsion = 18730.944890 eV Total energy + Delta-G solvation = -3452.492617 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.16730 -38.94343 -38.08219 -34.58507 -33.79760 -33.07567 -31.45226 -30.96706 -29.40980 -28.40292 -26.82970 -24.50033 -22.71614 -21.90214 -20.40135 -19.66645 -18.22414 -17.53721 -17.17554 -16.52895 -15.93037 -15.59209 -15.27376 -15.01703 -14.83726 -14.51762 -14.22263 -14.03650 -13.73603 -13.48982 -13.45052 -13.33483 -13.00434 -12.76423 -12.31169 -12.25623 -11.97692 -11.68777 -11.26365 -11.19514 -11.17092 -10.50750 -10.38448 -10.36225 -9.98307 -9.69896 -8.97020 -8.94781 -8.82946 -8.71122 -8.16835 -7.86534 -6.57359 -3.99768 0.83455 1.35599 1.57142 2.16162 2.92047 3.07131 3.14556 3.19044 3.24646 3.66345 3.81068 4.06019 4.27235 4.56118 4.78137 4.84155 4.91134 4.98038 5.05468 5.06999 5.10634 5.11140 5.40258 5.53553 5.69175 5.78670 5.84336 5.86533 5.97656 5.99002 6.33226 6.43745 6.48723 6.51605 6.89142 7.40252 7.59273 7.85027 8.23919 8.38088 8.98160 9.32126 9.79430 10.59350 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002887 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.319236 B = 9696.766543 C =10221.093662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.205 6.205 3 C -0.040 4.040 4 H 0.113 0.887 5 C 0.518 3.482 6 O -0.523 6.523 7 N -0.705 5.705 8 C 0.109 3.891 9 C 0.426 3.574 10 O -0.599 6.599 11 N -0.546 5.546 12 C -0.306 4.306 13 H 0.106 0.894 14 C 0.027 3.973 15 N -0.893 5.893 16 Si 0.933 3.067 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.067 4.067 21 C -0.066 4.066 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.099 4.099 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.409 0.591 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.259 -8.378 -10.541 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.025 5.975 3 C -0.171 4.171 4 H 0.131 0.869 5 C 0.300 3.700 6 O -0.399 6.399 7 N -0.360 5.360 8 C -0.018 4.018 9 C 0.212 3.788 10 O -0.486 6.486 11 N -0.181 5.181 12 C -0.436 4.436 13 H 0.123 0.877 14 C -0.176 4.176 15 N -0.533 5.533 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.068 4.068 21 C -0.085 4.085 22 C -0.145 4.145 23 C -0.131 4.131 24 C -0.146 4.146 25 C -0.119 4.119 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.247 0.753 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.932 -9.239 -10.347 20.381 hybrid contribution -1.850 1.497 0.195 2.388 sum 13.081 -7.743 -10.152 18.279 Atomic orbital electron populations 1.23649 0.93817 1.07118 1.06164 1.87040 1.07444 1.05513 1.97542 1.22142 0.97892 0.97155 0.99921 0.86907 1.20088 0.81889 0.78551 0.89481 1.90694 1.54379 1.57098 1.37771 1.45739 1.14708 1.59367 1.16158 1.20992 0.95330 0.98903 0.86603 1.19692 0.87711 0.85495 0.85911 1.90493 1.67884 1.62840 1.27369 1.41793 1.14123 1.49805 1.12355 1.19727 0.89082 1.34865 0.99904 0.87650 1.25339 1.00521 0.97049 0.94734 1.69610 1.38369 1.42793 1.02529 0.85808 0.81346 0.78303 0.78560 1.20214 1.20737 1.19288 1.18760 0.90682 1.00683 0.96696 1.21164 0.92945 0.97010 0.97384 1.21164 0.95089 0.99874 0.98346 1.21196 0.99712 0.97591 0.94589 1.21035 0.93159 1.00871 0.99553 1.20986 0.95603 0.98252 0.97070 0.87514 0.89520 0.89806 0.75320 0.89658 0.89668 0.77005 0.91500 0.84830 0.85879 0.86123 0.85907 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 10.54 101.05 1.07 -0.42 16 2 S -0.20 -2.49 21.40 -107.50 -2.30 -4.79 16 3 C -0.04 -0.51 2.81 -29.03 -0.08 -0.59 16 4 H 0.11 1.21 7.88 -51.92 -0.41 0.80 16 5 C 0.52 8.03 6.54 -10.99 -0.07 7.96 16 6 O -0.52 -9.48 14.54 5.55 0.08 -9.40 16 7 N -0.70 -11.25 4.88 -61.47 -0.30 -11.55 16 8 C 0.11 1.95 6.15 -5.19 -0.03 1.92 16 9 C 0.43 9.46 7.85 -10.99 -0.09 9.38 16 10 O -0.60 -14.76 15.24 5.54 0.08 -14.68 16 11 N -0.55 -13.24 5.29 -10.96 -0.06 -13.30 16 12 C -0.31 -8.16 9.68 -14.93 -0.14 -8.31 16 13 H 0.11 2.92 7.16 -52.48 -0.38 2.55 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.51 13.05 55.50 0.72 -22.78 16 16 Si 0.93 20.21 29.55 -169.99 -5.02 15.18 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 C -0.07 -0.85 4.69 -104.62 -0.49 -1.34 16 21 C -0.07 -0.86 8.01 -39.58 -0.32 -1.18 16 22 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.11 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 25 C -0.10 -1.09 9.67 -39.58 -0.38 -1.47 16 26 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.09 1.07 7.36 -51.92 -0.38 0.69 16 28 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.41 6.36 7.44 -40.82 -0.30 6.05 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.40 9.26 7.90 -40.82 -0.32 8.94 16 33 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.13 1.89 7.23 -52.48 -0.38 1.51 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.09 7.95 -52.48 -0.42 0.68 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -30.58 344.83 -8.11 -38.69 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -4.68 Total: 15.84 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.83 Total: 1.60 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.37 Total: -47.64 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.17 Total: -24.08 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.30 Total: -4.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.58 -8.11 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343552474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.854 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds