Wall clock time and date at job start Tue Mar 31 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 C 1.50705 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.38356 * 119.85526 * 269.72521 * 4 3 2 6 6 C 1.37954 * 120.14452 * 179.72414 * 5 4 3 7 7 C 1.39576 * 119.85355 * 0.55177 * 6 5 4 8 8 C 1.47845 * 120.14568 * 179.70690 * 7 6 5 9 9 O 1.21551 * 119.99724 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99874 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99641 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46777 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00046 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99731 * 180.02562 * 12 11 10 15 15 C 1.37100 * 119.99863 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99884 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00080 * 179.97438 * 15 14 12 18 18 N 1.31408 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47103 * 90.00128 * 19 17 15 21 21 H 1.48504 * 109.46864 * 209.99733 * 19 17 15 22 22 H 1.48500 * 109.47432 * 329.99853 * 19 17 15 23 23 C 1.39575 * 119.70708 * 359.72528 * 7 6 5 24 24 C 1.37948 * 119.85930 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 27 27 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 28 28 H 1.09002 * 109.46881 * 299.99990 * 3 2 1 29 29 H 1.09000 * 109.46946 * 60.00038 * 3 2 1 30 30 H 1.07999 * 119.92685 * 0.02562 * 5 4 3 31 31 H 1.08005 * 120.07244 * 180.25580 * 6 5 4 32 32 H 0.97000 * 119.99814 * 0.02562 * 10 8 7 33 33 H 1.09004 * 109.47221 * 300.00314 * 11 10 8 34 34 H 1.09001 * 109.47087 * 60.00599 * 11 10 8 35 35 H 0.96998 * 120.00054 * 359.97438 * 14 12 11 36 36 H 0.97001 * 120.00284 * 179.97438 * 18 17 15 37 37 H 1.08008 * 120.06808 * 179.97438 * 23 7 6 38 38 H 1.08005 * 119.93387 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 6 4.4027 2.0208 1.2009 6 6 5.7741 2.1706 1.2084 7 6 6.4711 2.2495 0.0017 8 6 7.9401 2.4165 0.0023 9 8 8.5443 2.4854 -1.0501 10 7 8.6092 2.4924 1.1698 11 6 10.0647 2.6585 1.1704 12 6 10.5634 2.7142 2.5915 13 8 9.7799 2.6245 3.5130 14 7 11.8798 2.8647 2.8382 15 6 12.3334 2.9159 4.1310 16 1 11.6358 2.8361 4.9516 17 6 13.6906 3.0706 4.3855 18 7 14.5395 3.1673 3.3870 19 14 14.3087 3.1396 6.1469 20 1 14.6312 1.7669 6.6124 21 1 15.5291 3.9834 6.2105 22 1 13.2572 3.7235 7.0179 23 6 5.7751 2.1704 -1.2055 24 6 4.4044 2.0144 -1.1991 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8031 2.2371 -0.8900 29 1 1.8031 2.2371 0.8900 30 1 3.8618 1.9636 2.1339 31 1 6.3067 2.2314 2.1461 32 1 8.1269 2.4370 2.0097 33 1 10.5268 1.8157 0.6562 34 1 10.3249 3.5842 0.6571 35 1 12.5062 2.9368 2.1012 36 1 15.4869 3.2756 3.5646 37 1 6.3085 2.2312 -2.1427 38 1 3.8646 1.9534 -2.1326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344179771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:13 Heat of formation + Delta-G solvation = -55.257581 kcal Electronic energy + Delta-G solvation = -21301.920931 eV Core-core repulsion = 17849.180495 eV Total energy + Delta-G solvation = -3452.740436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.23960 -38.80363 -37.95460 -34.53995 -33.79232 -33.14277 -31.41256 -31.15714 -29.49325 -28.51180 -26.90964 -24.55655 -22.89346 -22.49229 -20.21384 -19.66476 -18.34861 -17.80793 -16.78148 -16.19856 -15.75958 -15.46604 -15.30095 -15.01547 -14.94795 -14.50209 -14.37398 -14.12272 -13.94517 -13.89143 -13.72224 -13.46377 -13.10052 -12.94038 -12.43117 -12.22411 -11.93115 -11.76968 -11.64637 -11.24166 -11.13506 -10.49530 -10.46878 -10.33279 -9.86838 -9.65203 -9.18455 -9.03331 -8.75680 -8.65951 -8.11840 -8.07902 -6.52789 -3.94895 0.42109 1.19299 1.45597 2.16101 2.93291 3.10965 3.20866 3.24499 3.32398 3.70887 3.80545 4.10066 4.21801 4.37512 4.68809 4.71181 4.72344 4.76063 4.85540 4.91872 5.02327 5.15697 5.18887 5.25903 5.35808 5.58617 5.79275 5.87231 5.93568 6.04411 6.09153 6.21043 6.23645 6.58985 6.67168 7.44791 7.74716 7.90255 8.36102 8.43830 9.02974 9.37391 9.85040 10.63994 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.002183 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.341816 B =12824.278064 C =13573.327662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.248 6.248 3 C -0.047 4.047 4 C -0.059 4.059 5 C -0.107 4.107 6 C -0.083 4.083 7 C -0.120 4.120 8 C 0.554 3.446 9 O -0.545 6.545 10 N -0.701 5.701 11 C 0.108 3.892 12 C 0.427 3.573 13 O -0.598 6.598 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 C -0.060 4.060 24 C -0.110 4.110 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.411 0.589 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.396 0.604 36 H 0.274 0.726 37 H 0.139 0.861 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.071 -2.400 -8.255 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.020 6.020 3 C -0.195 4.195 4 C -0.060 4.060 5 C -0.127 4.127 6 C -0.101 4.101 7 C -0.124 4.124 8 C 0.340 3.660 9 O -0.424 6.424 10 N -0.355 5.355 11 C -0.019 4.019 12 C 0.213 3.787 13 O -0.485 6.485 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.079 4.079 24 C -0.130 4.130 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.250 0.750 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.157 0.843 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.281 -3.270 -8.350 24.948 hybrid contribution -0.250 1.062 0.827 1.369 sum -23.531 -2.208 -7.522 24.802 Atomic orbital electron populations 1.23425 0.94637 1.06620 1.04896 1.87365 1.06644 1.10009 1.98025 1.22353 0.95866 0.95294 1.05948 1.19353 0.92993 0.99688 0.93974 1.20961 0.94010 1.00112 0.97606 1.21443 0.94360 0.96686 0.97661 1.20040 0.93169 1.04753 0.94459 1.18217 0.86899 0.77046 0.83804 1.90756 1.69538 1.50874 1.31237 1.45639 1.08008 1.72694 1.09149 1.20995 0.80622 1.03167 0.97150 1.19719 0.83851 0.85688 0.89436 1.90490 1.55106 1.57447 1.45446 1.41792 1.05442 1.61729 1.09277 1.19734 0.92135 1.47572 0.84044 0.87643 1.25336 0.95722 0.96738 0.99939 1.69613 1.03705 1.48608 1.31456 0.85803 0.78283 0.78342 0.81541 1.20248 1.20792 1.19314 1.21249 0.93557 0.95184 0.97926 1.20972 0.93984 1.00549 0.97519 0.87991 0.90442 0.90492 0.88946 0.88896 0.85122 0.84736 0.75011 0.89604 0.89609 0.76997 0.91562 0.84307 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 10.76 101.05 1.09 0.45 16 2 S -0.25 -2.09 22.36 -107.50 -2.40 -4.50 16 3 C -0.05 -0.33 6.06 36.01 0.22 -0.12 16 4 C -0.06 -0.54 5.15 -104.53 -0.54 -1.08 16 5 C -0.11 -1.06 9.68 -39.64 -0.38 -1.45 16 6 C -0.08 -0.97 9.54 -39.19 -0.37 -1.34 16 7 C -0.12 -1.62 5.87 -104.97 -0.62 -2.24 16 8 C 0.55 9.16 7.77 -12.33 -0.10 9.06 16 9 O -0.54 -10.43 16.35 5.32 0.09 -10.34 16 10 N -0.70 -11.93 5.48 -62.43 -0.34 -12.27 16 11 C 0.11 2.01 6.15 -5.19 -0.03 1.97 16 12 C 0.43 9.77 7.85 -10.98 -0.09 9.68 16 13 O -0.60 -15.18 15.24 5.55 0.08 -15.09 16 14 N -0.55 -13.54 5.29 -10.96 -0.06 -13.59 16 15 C -0.31 -8.27 9.68 -14.93 -0.14 -8.41 16 16 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 19 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.06 -0.72 9.59 -39.19 -0.38 -1.09 16 24 C -0.11 -1.07 9.68 -39.64 -0.38 -1.46 16 25 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.09 0.52 8.08 -51.92 -0.42 0.10 16 29 H 0.09 0.54 8.08 -51.92 -0.42 0.12 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.50 6.41 -52.48 -0.34 1.16 16 32 H 0.41 6.77 5.47 -40.82 -0.22 6.54 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 35 H 0.40 9.41 7.90 -40.82 -0.32 9.08 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.14 1.62 7.65 -52.48 -0.40 1.22 16 38 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -31.69 347.82 -8.10 -39.79 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -4.59 Total: 13.83 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.82 Total: 4.55 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.32 Total: -48.92 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.17 Total: -25.43 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -2.40 Total: -4.50 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.69 -8.10 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344179771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.465 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds