Wall clock time and date at job start Tue Mar 31 2020 05:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 13 13 C 1.46505 * 120.00155 * 299.99972 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00096 * 12 2 1 15 15 O 1.42095 * 106.40444 * 203.53750 * 14 12 2 16 16 O 1.42097 * 106.40082 * 336.46142 * 14 12 2 17 17 N 1.65604 * 107.21800 * 89.99874 * 14 12 2 18 18 C 1.46504 * 119.99990 * 65.00135 * 17 14 12 19 19 H 1.08999 * 108.84996 * 333.57770 * 18 17 14 20 20 C 1.53703 * 108.88578 * 92.02025 * 18 17 14 21 21 S 1.83391 * 104.96997 * 117.97141 * 20 18 17 22 22 C 1.83987 * 95.85062 * 340.24815 * 21 20 18 23 23 C 1.52943 * 108.88767 * 215.00099 * 18 17 14 24 24 H 1.08993 * 109.60499 * 149.37440 * 23 18 17 25 25 C 1.52996 * 109.60276 * 29.23395 * 23 18 17 26 26 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 27 27 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 29 29 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 31 31 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 32 32 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 33 33 H 0.97000 * 120.00229 * 245.00178 * 17 14 12 34 34 H 1.09007 * 110.33917 * 236.83730 * 20 18 17 35 35 H 1.08997 * 110.34248 * 359.09440 * 20 18 17 36 36 H 1.09005 * 111.13097 * 277.43840 * 22 21 20 37 37 H 1.08998 * 111.16776 * 153.28324 * 22 21 20 38 38 H 1.09004 * 109.47133 * 60.00652 * 25 23 18 39 39 H 1.09001 * 109.47038 * 179.97438 * 25 23 18 40 40 H 1.09000 * 109.47722 * 300.00332 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9703 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5258 16 8 2.6904 1.4971 -2.1194 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8414 19 1 4.3419 -2.1821 -1.7249 20 6 5.8186 -1.6628 -3.2010 21 16 7.5917 -1.9137 -2.8057 22 6 7.5233 -1.1399 -1.1378 23 6 6.1098 -1.5758 -0.6696 24 1 6.1394 -2.6121 -0.3332 25 6 5.6513 -0.6790 0.4820 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.9026 -0.5281 4.4376 30 1 0.7375 -2.1445 -1.9992 31 1 2.4628 -2.5821 -1.9862 32 1 1.5295 -2.5969 -0.4706 33 1 5.0734 0.6548 -1.5282 34 1 5.4112 -2.5468 -3.6919 35 1 5.6920 -0.7846 -3.8341 36 1 7.5978 -0.0545 -1.2048 37 1 8.2959 -1.5446 -0.4842 38 1 4.6548 -0.9818 0.8038 39 1 6.3466 -0.7747 1.3160 40 1 5.6255 0.3579 0.1472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352338532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:05 Heat of formation + Delta-G solvation = -66.809521 kcal Electronic energy + Delta-G solvation = -23546.108932 eV Core-core repulsion = 20228.311518 eV Total energy + Delta-G solvation = -3317.797414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.23337 -36.85994 -36.46348 -35.45194 -32.63041 -32.47931 -30.12429 -29.78550 -26.92754 -25.82807 -25.12857 -23.72213 -21.03899 -19.98584 -19.18925 -17.64196 -17.17785 -16.60923 -16.39687 -15.93956 -15.32865 -15.11817 -14.55297 -14.40770 -13.74386 -13.57366 -13.27641 -12.93914 -12.76187 -12.45527 -12.23892 -12.17220 -12.08688 -11.94949 -11.87468 -11.70589 -11.58855 -11.42533 -11.28467 -11.06199 -10.83274 -10.72533 -10.61093 -10.20883 -10.09319 -9.68441 -9.49973 -9.33106 -8.73833 -8.21443 -7.75493 -6.25577 -4.26807 1.03413 1.82332 2.27490 3.17250 3.26215 3.30588 3.32896 3.93451 4.25900 4.39652 4.63565 4.72775 4.81080 5.03590 5.08494 5.10103 5.21849 5.44468 5.51492 5.60086 5.66701 5.83195 5.93682 5.98794 6.10718 6.18663 6.22792 6.32039 6.35684 6.46445 6.56488 6.78335 6.82487 7.04485 7.21847 7.30605 7.54605 8.32712 8.75268 9.35748 10.85898 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.006108 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.520726 B = 4583.383335 C = 5459.120480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.239 3.761 3 H 0.057 0.943 4 C -0.527 4.527 5 H 0.086 0.914 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.875 3.125 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.983 5.983 13 C 0.101 3.899 14 S 2.782 3.218 15 O -0.991 6.991 16 O -0.983 6.983 17 N -1.120 6.120 18 C 0.158 3.842 19 H 0.099 0.901 20 C -0.079 4.079 21 S -0.310 6.310 22 C -0.061 4.061 23 C -0.096 4.096 24 H 0.095 0.905 25 C -0.146 4.146 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.266 0.734 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -1.856 -8.070 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.566 4.566 5 H 0.103 0.897 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.705 3.295 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.825 5.825 13 C -0.045 4.045 14 S 2.790 3.210 15 O -0.974 6.974 16 O -0.967 6.967 17 N -0.880 5.880 18 C 0.049 3.951 19 H 0.116 0.884 20 C -0.229 4.229 21 S -0.083 6.083 22 C -0.209 4.209 23 C -0.117 4.117 24 H 0.114 0.886 25 C -0.205 4.205 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.249 0.751 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.937 -2.030 -9.362 11.828 hybrid contribution -1.183 1.365 1.361 2.261 sum 5.754 -0.666 -8.002 9.878 Atomic orbital electron populations 1.22417 0.98856 1.01360 0.99163 1.19094 0.90972 0.93405 0.83098 0.92571 1.21158 1.33000 1.14257 0.88137 0.89653 1.24858 0.95433 0.96414 0.95792 1.69862 1.44947 1.39938 0.97995 0.87053 0.80907 0.84038 0.77528 1.20370 1.22227 1.18697 1.57454 1.64617 1.21545 1.38912 1.21324 0.99186 0.81587 1.02369 1.01861 0.72648 0.73073 0.73397 1.93568 1.85998 1.76201 1.41668 1.93593 1.83690 1.32514 1.86878 1.56338 1.32111 1.14627 1.84885 1.21233 0.97420 0.84321 0.92130 0.88351 1.24621 0.91668 1.06436 1.00140 1.87750 1.16006 1.80036 1.24551 1.24514 1.00181 1.02834 0.93346 1.22239 0.91280 1.02480 0.95748 0.88635 1.21919 1.04340 0.98654 0.95587 0.94772 0.92261 0.93324 0.92423 0.93570 0.93008 0.89528 0.75055 0.87597 0.88253 0.89147 0.87557 0.88540 0.92624 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.67 37.16 0.32 -2.92 16 2 C 0.24 5.10 2.21 -69.08 -0.15 4.94 16 3 H 0.06 1.29 5.97 -51.93 -0.31 0.98 16 4 C -0.53 -12.49 7.91 -34.44 -0.27 -12.77 16 5 H 0.09 2.11 6.76 -52.49 -0.36 1.76 16 6 C 0.08 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.89 -24.29 13.96 55.43 0.77 -23.51 16 8 Si 0.87 20.26 24.37 -169.99 -4.14 16.12 16 9 H -0.28 -6.28 6.87 56.52 0.39 -5.90 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.26 -5.98 6.53 56.52 0.37 -5.62 16 12 N -0.98 -17.80 3.12 -115.85 -0.36 -18.16 16 13 C 0.10 1.58 9.05 59.85 0.54 2.12 16 14 S 2.78 48.17 5.99 -107.50 -0.64 47.53 16 15 O -0.99 -18.01 16.90 -57.17 -0.97 -18.97 16 16 O -0.98 -20.13 16.70 -57.17 -0.95 -21.09 16 17 N -1.12 -15.62 4.38 -4.60 -0.02 -15.64 16 18 C 0.16 1.99 2.96 -67.59 -0.20 1.79 16 19 H 0.10 1.23 6.08 -51.93 -0.32 0.91 16 20 C -0.08 -0.96 7.08 37.52 0.27 -0.70 16 21 S -0.31 -3.81 23.23 -107.50 -2.50 -6.30 16 22 C -0.06 -0.65 6.86 38.30 0.26 -0.38 16 23 C -0.10 -1.13 2.99 -89.51 -0.27 -1.40 16 24 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 25 C -0.15 -2.00 8.51 37.16 0.32 -1.68 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 28 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.69 6.18 -51.93 -0.32 0.37 16 32 H 0.09 1.41 7.01 -51.93 -0.36 1.05 16 33 H 0.41 5.24 7.15 -34.48 -0.25 4.99 16 34 H 0.11 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.10 1.26 7.88 -51.93 -0.41 0.85 16 36 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.66 6.59 -51.93 -0.34 1.32 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.72 6.28 -51.93 -0.33 0.39 16 LS Contribution 326.96 15.07 4.93 4.93 Total: -1.00 -29.22 326.96 -8.87 -38.09 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.70 Total: 6.08 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 0.72 Total: -9.07 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.39 Total: -57.31 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.92 Total: -40.06 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.14 Total: 16.12 kcal Atomic # 16 Polarization: 44.37 SS G_CDS: -3.14 Total: 41.23 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.22 -8.87 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352338532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.723 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds