Wall clock time and date at job start Tue Mar 31 2020 05:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00033 * 2 1 4 4 C 1.50694 * 109.47090 * 275.00032 * 3 2 1 5 5 H 1.07999 * 120.00152 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99968 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99920 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00163 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47327 * 59.99645 * 8 6 4 10 10 H 1.48493 * 109.47203 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.46867 * 299.99903 * 8 6 4 12 12 S 1.65606 * 119.99800 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40007 * 156.45914 * 12 2 1 14 14 O 1.42096 * 106.40248 * 23.53910 * 12 2 1 15 15 N 1.65605 * 107.21722 * 269.99777 * 12 2 1 16 16 C 1.46501 * 119.99597 * 65.00143 * 15 12 2 17 17 C 1.53004 * 109.46508 * 164.99992 * 16 15 12 18 18 C 1.52575 * 109.22695 * 63.76582 * 17 16 15 19 19 C 1.53102 * 109.95374 * 190.99545 * 18 17 16 20 20 S 1.81739 * 108.84117 * 296.97150 * 19 18 17 21 21 C 1.81751 * 102.22279 * 53.26834 * 20 19 18 22 22 C 1.52586 * 109.22423 * 184.99961 * 17 16 15 23 23 H 1.09003 * 109.47124 * 269.99507 * 1 2 3 24 24 H 1.08997 * 109.47218 * 29.99600 * 1 2 3 25 25 H 1.09001 * 109.47445 * 149.99981 * 1 2 3 26 26 H 1.08998 * 109.47152 * 35.00510 * 3 2 1 27 27 H 1.09010 * 109.47129 * 154.99965 * 3 2 1 28 28 H 0.96995 * 119.99914 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99654 * 245.00267 * 15 12 2 30 30 H 1.08996 * 109.47043 * 45.00311 * 16 15 12 31 31 H 1.09000 * 109.47414 * 284.99320 * 16 15 12 32 32 H 1.09004 * 109.18795 * 304.37969 * 17 16 15 33 33 H 1.09000 * 109.39151 * 311.13902 * 18 17 16 34 34 H 1.09004 * 109.39609 * 70.84538 * 18 17 16 35 35 H 1.09003 * 109.57550 * 177.16316 * 19 18 17 36 36 H 1.08997 * 109.57619 * 56.78199 * 19 18 17 37 37 H 1.08999 * 109.57590 * 186.93240 * 21 20 19 38 38 H 1.08992 * 109.57373 * 66.53609 * 21 20 19 39 39 H 1.09003 * 109.38723 * 289.15302 * 22 17 16 40 40 H 1.09001 * 109.38828 * 48.85162 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9282 1.1938 -2.2331 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6475 -0.6704 8 14 3.1775 3.5673 -3.4206 9 1 1.8310 3.7726 -4.0121 10 1 3.9201 4.8532 -3.4206 11 1 3.9235 2.5655 -4.2240 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5810 16 6 1.3946 -2.1789 2.4392 17 6 1.8875 -2.8866 3.7030 18 6 2.7736 -1.9334 4.4994 19 6 3.4932 -2.6973 5.6142 20 16 2.2536 -3.3604 6.7659 21 6 1.1403 -4.2681 5.6524 22 6 0.6856 -3.3273 4.5333 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6502 2.0042 0.5895 27 1 3.1858 1.1176 0.4344 28 1 3.9659 4.4810 -0.8470 29 1 3.4388 -1.8969 1.9391 30 1 0.7080 -2.8325 1.9012 31 1 0.8793 -1.2590 2.7155 32 1 2.4686 -3.7639 3.4188 33 1 3.5111 -1.4840 3.8344 34 1 2.1579 -1.1480 4.9380 35 1 4.1622 -2.0215 6.1470 36 1 4.0670 -3.5176 5.1832 37 1 0.2719 -4.6185 6.2101 38 1 1.6683 -5.1190 5.2221 39 1 0.2063 -2.4509 4.9696 40 1 -0.0268 -3.8458 3.8917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354558011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:52 Heat of formation + Delta-G solvation = -92.274885 kcal Electronic energy + Delta-G solvation = -22147.288375 eV Core-core repulsion = 18828.386700 eV Total energy + Delta-G solvation = -3318.901675 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.39573 -36.61815 -35.51069 -35.18856 -34.09082 -32.44665 -31.81696 -28.57596 -27.79307 -25.08408 -23.92713 -23.31531 -22.30435 -20.62082 -18.94183 -17.40906 -17.13752 -16.70871 -16.51990 -15.98996 -15.11955 -14.96738 -14.66265 -14.40682 -14.21401 -13.93574 -13.56485 -13.30872 -13.09699 -13.05818 -12.81213 -12.29153 -12.16576 -12.00646 -11.68569 -11.61697 -11.47445 -11.18804 -11.12682 -11.07890 -11.04139 -10.73242 -10.64292 -10.50783 -10.05150 -9.95603 -9.80062 -9.34741 -8.45553 -8.09401 -7.95322 -6.07870 -4.12004 1.20403 1.50771 2.25991 3.32860 3.36463 3.40723 3.48924 4.09814 4.23006 4.38055 4.43823 4.46872 4.66785 4.88168 4.92412 4.99024 5.13303 5.18170 5.27309 5.28566 5.39262 5.48180 5.56319 5.61301 5.64870 5.70058 5.77385 5.94496 6.01763 6.09201 6.28057 6.53795 7.05482 7.23348 7.39720 7.59011 7.89508 8.18812 8.90129 9.53269 11.00673 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.024877 B = 0.003487 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.286803 B = 8027.872430 C = 8483.508836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.995 5.995 3 C 0.258 3.742 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.782 3.218 13 O -0.964 6.964 14 O -0.999 6.999 15 N -1.135 6.135 16 C 0.127 3.873 17 C -0.102 4.102 18 C -0.121 4.121 19 C -0.079 4.079 20 S -0.276 6.276 21 C -0.078 4.078 22 C -0.118 4.118 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.264 0.736 29 H 0.411 0.589 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 -13.304 13.612 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.838 5.838 3 C 0.136 3.864 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.983 6.983 15 N -0.894 5.894 16 C 0.001 3.999 17 C -0.122 4.122 18 C -0.160 4.160 19 C -0.227 4.227 20 S -0.050 6.050 21 C -0.227 4.227 22 C -0.157 4.157 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.979 -13.498 13.930 20.026 hybrid contribution 0.546 0.539 -1.673 1.840 sum -4.433 -12.959 12.258 18.381 Atomic orbital electron populations 1.21369 0.80227 1.03528 1.00125 1.57579 1.14255 1.23295 1.88709 1.19035 0.90969 0.78725 0.97634 1.21465 1.36253 1.06356 0.92955 0.92227 1.24932 0.95075 0.96474 0.97503 1.69907 1.37252 1.15341 1.30996 0.86571 0.78314 0.78002 0.84656 1.20163 1.21155 1.19987 1.01909 0.73360 0.72935 0.72831 1.93646 1.40675 1.84839 1.75615 1.93517 1.67636 1.60234 1.76863 1.56303 1.14428 1.86336 1.32382 1.21205 0.88156 0.99737 0.90839 1.21352 0.96992 0.99012 0.94856 1.21825 0.99426 0.98260 0.96529 1.23470 0.98174 1.02662 0.98375 1.86919 1.32138 1.67785 1.18148 1.23429 1.00848 0.99736 0.98644 1.21740 0.97686 0.99895 0.96404 0.94366 0.90369 0.91597 0.94729 0.94484 0.92623 0.75565 0.90421 0.91570 0.90243 0.90029 0.90013 0.87616 0.89817 0.87718 0.89837 0.90050 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.68 59.85 0.64 2.20 16 2 N -1.00 -20.02 3.23 -123.06 -0.40 -20.42 16 3 C 0.26 6.36 5.08 -5.20 -0.03 6.34 16 4 C -0.53 -14.84 9.38 -34.44 -0.32 -15.16 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.76 5.46 -17.81 -0.10 1.67 16 7 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 S 2.78 53.18 6.10 -107.50 -0.66 52.53 16 13 O -0.96 -22.62 17.11 -57.17 -0.98 -23.60 16 14 O -1.00 -20.16 16.21 -57.17 -0.93 -21.08 16 15 N -1.13 -15.56 5.86 -10.61 -0.06 -15.62 16 16 C 0.13 1.39 5.61 -4.04 -0.02 1.37 16 17 C -0.10 -0.88 2.05 -91.05 -0.19 -1.07 16 18 C -0.12 -1.06 5.00 -26.90 -0.13 -1.20 16 19 C -0.08 -0.65 6.45 37.21 0.24 -0.41 16 20 S -0.28 -2.56 22.33 -107.50 -2.40 -4.96 16 21 C -0.08 -0.57 6.46 37.21 0.24 -0.33 16 22 C -0.12 -0.86 5.05 -26.89 -0.14 -1.00 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.08 1.33 8.07 -51.93 -0.42 0.92 16 25 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 26 H 0.03 0.86 8.11 -51.93 -0.42 0.44 16 27 H 0.04 0.97 7.61 -51.92 -0.40 0.57 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.41 4.98 7.28 -34.47 -0.25 4.72 16 30 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.08 0.74 6.56 -51.93 -0.34 0.40 16 34 H 0.08 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 40 H 0.08 0.51 8.05 -51.93 -0.42 0.10 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -33.60 345.75 -10.65 -44.24 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.35 Total: -0.22 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 0.19 Total: -7.59 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.28 Total: -61.27 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.90 Total: -44.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 50.63 SS G_CDS: -3.06 Total: 47.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.60 -10.65 -44.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354558011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.031 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds