Wall clock time and date at job start Tue Mar 31 2020 04:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48502 * 109.47100 * 269.99731 * 3 2 1 5 5 H 1.48493 * 109.47368 * 30.00223 * 3 2 1 6 6 H 1.48502 * 109.46942 * 150.00368 * 3 2 1 7 7 C 1.38944 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00519 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00528 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99560 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00495 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47277 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99583 * 179.97438 * 13 12 10 15 15 O 1.21280 * 120.00571 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99795 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.67037 * 301.78368 * 16 14 13 18 18 C 1.54709 * 110.75110 * 64.99809 * 16 14 13 19 19 C 1.51650 * 101.93968 * 93.24872 * 18 16 14 20 20 C 1.37755 * 132.14441 * 195.49284 * 19 18 16 21 21 C 1.38543 * 119.95668 * 179.44167 * 20 19 18 22 22 F 1.35099 * 120.13776 * 179.90513 * 21 20 19 23 23 C 1.38475 * 119.71447 * 359.92193 * 21 20 19 24 24 C 1.37932 * 120.32453 * 0.18490 * 23 21 20 25 25 C 1.38868 * 107.05118 * 15.49098 * 19 18 16 26 26 O 1.36190 * 111.22091 * 0.86643 * 25 19 18 27 27 H 0.97002 * 120.00329 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99635 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47175 * 59.99349 * 12 10 9 30 30 H 1.09003 * 109.46392 * 299.99714 * 12 10 9 31 31 H 0.96991 * 119.99948 * 359.97438 * 13 12 10 32 32 H 1.08996 * 110.93192 * 335.08929 * 18 16 14 33 33 H 1.08995 * 110.96753 * 211.42496 * 18 16 14 34 34 H 1.07999 * 120.02204 * 359.40883 * 20 19 18 35 35 H 1.08005 * 119.83428 * 180.20934 * 23 21 20 36 36 H 1.08002 * 119.85955 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1959 -5.9764 -0.0004 14 6 1.7466 -7.2471 -0.0002 15 8 0.5542 -7.4688 -0.0002 16 6 2.7259 -8.3925 0.0000 17 1 3.3842 -8.3360 -0.8670 18 6 3.5468 -8.4116 1.3111 19 6 2.7344 -9.3558 2.1762 20 6 2.7394 -9.6031 3.5314 21 6 1.8627 -10.5317 4.0684 22 9 1.8658 -10.7785 5.3966 23 6 0.9836 -11.2061 3.2378 24 6 0.9801 -10.9600 1.8806 25 6 1.8661 -10.0358 1.3324 26 8 2.0389 -9.6550 0.0363 27 1 -0.4851 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6174 -4.9205 -0.8913 30 1 0.6169 -4.9208 0.8887 31 1 3.1494 -5.7992 0.0000 32 1 3.5928 -7.4178 1.7563 33 1 4.5482 -8.8058 1.1386 34 1 3.4266 -9.0737 4.1747 35 1 0.2969 -11.9280 3.6548 36 1 0.2910 -11.4900 1.2397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367805311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:01 Heat of formation + Delta-G solvation = -119.863812 kcal Electronic energy + Delta-G solvation = -24106.060159 eV Core-core repulsion = 20084.305011 eV Total energy + Delta-G solvation = -4021.755148 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.04907 -41.73222 -39.36455 -38.18614 -37.24748 -34.61750 -33.88221 -33.04252 -31.45890 -30.24821 -29.87398 -27.67495 -25.08956 -24.09384 -22.76522 -22.14654 -20.56290 -19.73552 -18.42716 -17.93753 -17.67624 -17.51303 -16.97506 -16.02070 -15.73229 -15.67730 -15.41431 -14.97714 -14.73135 -14.46767 -14.32392 -14.00317 -13.79904 -13.56888 -13.33007 -13.23985 -12.98018 -12.66797 -12.30669 -12.21485 -11.83765 -11.68861 -11.59260 -11.17101 -11.11070 -10.50495 -10.37408 -9.85976 -9.69730 -9.33992 -8.98259 -8.72181 -8.29602 -8.16815 -6.57236 -3.99701 0.81493 0.90450 2.47037 2.69313 3.07426 3.17665 3.20392 3.25264 3.29756 3.66149 3.79937 4.05205 4.08920 4.25781 4.50533 4.59561 4.75682 4.78188 4.84203 4.93344 5.11116 5.20158 5.25973 5.39053 5.55223 5.77774 5.79779 5.85045 5.85421 5.97489 5.99324 6.24899 6.48065 6.79402 7.40417 7.57267 7.85047 8.20379 8.37950 8.98237 9.32168 9.79337 10.59462 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.002634 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.767370 B =10626.984503 C =11017.292186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.700 5.700 14 C 0.494 3.506 15 O -0.527 6.527 16 C 0.066 3.934 17 H 0.148 0.852 18 C -0.101 4.101 19 C -0.146 4.146 20 C -0.101 4.101 21 C 0.068 3.932 22 F -0.139 7.139 23 C -0.117 4.117 24 C -0.104 4.104 25 C 0.105 3.895 26 O -0.269 6.269 27 H 0.275 0.725 28 H 0.396 0.604 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.412 0.588 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -19.441 3.826 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.356 5.356 14 C 0.278 3.722 15 O -0.403 6.403 16 C 0.006 3.994 17 H 0.165 0.835 18 C -0.138 4.138 19 C -0.147 4.147 20 C -0.120 4.120 21 C 0.048 3.952 22 F -0.117 7.117 23 C -0.136 4.136 24 C -0.123 4.123 25 C 0.060 3.940 26 O -0.181 6.181 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.250 0.750 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.799 -19.517 3.664 20.218 hybrid contribution 0.205 1.123 0.261 1.171 sum 4.004 -18.393 3.924 19.229 Atomic orbital electron populations 1.69609 1.06050 1.28648 1.49003 1.25339 0.95669 1.00001 0.96644 0.85805 0.79238 0.80414 0.78537 1.20213 1.20756 1.19273 1.19732 0.93476 0.81939 1.48443 0.87611 1.41798 1.09525 1.04490 1.62294 1.19675 0.88274 0.84915 0.85917 1.90494 1.13629 1.86785 1.57622 1.20993 0.91794 0.85617 1.03456 1.45612 1.11825 1.04307 1.73862 1.20702 0.89904 0.84086 0.77557 1.90741 1.16186 1.84543 1.48805 1.23329 0.91835 0.82575 1.01616 0.83494 1.21848 0.99121 1.00943 0.91932 1.20513 0.99052 1.01340 0.93808 1.20192 0.99638 0.98186 0.93944 1.17362 1.00091 0.99858 0.77861 1.91499 1.95953 1.93409 1.30865 1.20845 0.99412 1.00818 0.92522 1.20081 0.98257 0.99919 0.94021 1.19578 0.94415 0.96184 0.83852 1.86955 1.75238 1.33742 1.22213 0.91498 0.77006 0.89611 0.89725 0.74968 0.87658 0.87190 0.84250 0.83804 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.45 13.05 55.50 0.72 -22.73 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.31 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -13.17 5.29 -10.97 -0.06 -13.23 16 10 C 0.43 9.36 7.85 -10.99 -0.09 9.27 16 11 O -0.60 -14.55 15.24 5.54 0.08 -14.47 16 12 C 0.11 1.91 6.15 -5.19 -0.03 1.88 16 13 N -0.70 -10.63 5.36 -61.47 -0.33 -10.96 16 14 C 0.49 7.36 7.08 -10.99 -0.08 7.28 16 15 O -0.53 -9.88 16.55 -13.40 -0.22 -10.10 16 16 C 0.07 0.73 4.10 -26.98 -0.11 0.62 16 17 H 0.15 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.10 -0.93 6.64 -26.52 -0.18 -1.11 16 19 C -0.15 -1.63 6.26 -104.10 -0.65 -2.28 16 20 C -0.10 -1.06 10.02 -39.65 -0.40 -1.46 16 21 C 0.07 0.73 7.31 -39.38 -0.29 0.44 16 22 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 23 C -0.12 -1.14 10.00 -39.61 -0.40 -1.53 16 24 C -0.10 -1.11 10.06 -39.31 -0.40 -1.51 16 25 C 0.11 1.30 6.92 -38.97 -0.27 1.03 16 26 O -0.27 -3.50 10.42 -39.31 -0.41 -3.91 16 27 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.41 5.85 7.44 -40.82 -0.30 5.54 16 32 H 0.11 0.97 7.78 -51.93 -0.40 0.57 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -32.20 326.95 -6.89 -39.09 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -3.50 Total: 12.85 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.12 Total: 4.95 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.34 Total: -46.91 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.55 Total: -28.48 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.20 -6.89 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367805311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.778 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds