Wall clock time and date at job start Tue Mar 31 2020 04:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38424 * 122.54274 * 2 1 4 4 C 1.33394 * 114.91902 * 180.27188 * 3 2 1 5 5 S 1.75878 * 109.59316 * 359.76770 * 4 3 2 6 6 C 1.33397 * 122.53437 * 179.82459 * 2 1 3 7 7 C 1.50692 * 125.20598 * 0.02562 * 6 2 1 8 8 H 1.09003 * 115.56077 * 334.02931 * 7 6 2 9 9 C 1.53074 * 117.51499 * 188.32482 * 7 6 2 10 10 C 1.53001 * 59.98553 * 252.52091 * 9 7 6 11 11 H 1.08999 * 117.49835 * 252.50373 * 10 9 7 12 12 C 1.50698 * 117.50007 * 107.49660 * 10 9 7 13 13 O 1.21283 * 120.00472 * 291.25886 * 12 10 9 14 14 N 1.34777 * 119.99538 * 111.25224 * 12 10 9 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 10 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 O 1.21293 * 120.00086 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00069 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00084 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00027 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99944 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99514 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00192 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47136 * 89.99746 * 23 21 19 25 25 H 1.48494 * 109.47146 * 210.00018 * 23 21 19 26 26 H 1.48504 * 109.46915 * 329.99667 * 23 21 19 27 27 H 1.08999 * 109.47171 * 270.17657 * 1 2 3 28 28 H 1.09009 * 109.46834 * 30.16968 * 1 2 3 29 29 H 1.08994 * 109.47492 * 150.17246 * 1 2 3 30 30 H 1.07993 * 122.53962 * 0.04146 * 3 2 1 31 31 H 1.08001 * 125.19971 * 179.74943 * 4 3 2 32 32 H 1.09000 * 117.49347 * 145.03584 * 9 7 6 33 33 H 1.09001 * 117.51171 * 359.97438 * 9 7 6 34 34 H 0.97001 * 120.00485 * 0.02562 * 14 12 10 35 35 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 36 36 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 37 37 H 0.97002 * 120.00050 * 359.97438 * 18 16 15 38 38 H 0.97006 * 120.00107 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9899 -0.0057 5 16 3.9385 -0.7306 -0.0049 6 6 2.2244 -1.1246 0.0034 7 6 1.6535 -2.5192 0.0072 8 1 0.6571 -2.6184 0.4377 9 6 2.6288 -3.6820 0.2074 10 6 2.0090 -3.4313 -1.1688 11 1 1.2462 -4.1301 -1.5121 12 6 2.9031 -2.8660 -2.2422 13 8 3.3110 -1.7273 -2.1542 14 7 3.2495 -3.6262 -3.2998 15 6 4.1139 -3.0747 -4.3463 16 6 4.3424 -4.1174 -5.4102 17 8 3.8338 -5.2134 -5.3044 18 7 5.1129 -3.8323 -6.4786 19 6 5.3213 -4.7810 -7.4461 20 1 4.8684 -5.7569 -7.3520 21 6 6.1152 -4.4869 -8.5480 22 7 6.3152 -5.3964 -9.4751 23 14 6.8991 -2.7992 -8.7106 24 1 8.2353 -2.8095 -8.0627 25 1 7.0487 -2.4593 -10.1484 26 1 6.0364 -1.7870 -8.0499 27 1 -0.3633 0.0032 1.0276 28 1 -0.3633 0.8885 -0.5165 29 1 -0.3634 -0.8915 -0.5111 30 1 1.7966 2.1463 0.0007 31 1 4.3078 1.7821 -0.0105 32 1 2.2735 -4.5456 0.7695 33 1 3.6834 -3.4382 0.3360 34 1 2.9231 -4.5369 -3.3704 35 1 3.6354 -2.2016 -4.7902 36 1 5.0701 -2.7834 -3.9117 37 1 5.5200 -2.9559 -6.5630 38 1 6.8698 -5.1913 -10.2441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367817432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:11 Heat of formation + Delta-G solvation = -3.515496 kcal Electronic energy + Delta-G solvation = -22337.104365 eV Core-core repulsion = 18886.607634 eV Total energy + Delta-G solvation = -3450.496730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.17071 -38.68306 -38.00198 -36.30101 -34.49757 -33.73189 -31.81775 -30.82963 -28.46523 -27.47128 -24.92205 -23.44196 -23.29328 -21.62674 -20.12240 -19.61435 -18.97970 -18.44673 -17.28676 -16.54799 -15.82165 -15.66397 -15.28953 -15.14589 -14.71610 -14.65806 -14.06184 -13.84931 -13.76478 -13.17576 -13.07079 -12.85358 -12.50748 -12.36674 -12.19573 -12.13860 -12.06345 -11.91383 -11.62165 -11.25306 -10.94056 -10.65775 -10.62176 -10.42822 -10.07894 -9.77425 -9.71281 -8.90969 -8.78601 -8.32022 -8.22097 -7.68029 -6.42275 -3.94839 1.10009 1.88005 2.22103 2.59855 2.82859 2.98338 3.02911 3.10849 3.25041 3.54745 3.75385 4.02170 4.34162 4.51100 4.58829 4.66187 4.95768 4.99999 5.11332 5.13025 5.38338 5.39543 5.49642 5.52927 5.55568 5.64214 5.70923 5.74617 5.79321 5.81480 5.89234 6.20037 6.53427 6.60138 6.66150 7.42707 7.76739 7.99090 8.38836 8.46619 8.80246 9.28401 9.62071 10.69940 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.003135 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.860349 B = 8929.198146 C = 9618.504631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.116 4.116 3 C -0.136 4.136 4 C -0.235 4.235 5 S 0.175 5.825 6 C -0.138 4.138 7 C -0.051 4.051 8 H 0.128 0.872 9 C -0.148 4.148 10 C -0.176 4.176 11 H 0.131 0.869 12 C 0.528 3.472 13 O -0.523 6.523 14 N -0.703 5.703 15 C 0.109 3.891 16 C 0.438 3.562 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.122 0.878 21 C 0.045 3.955 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.274 1.274 26 H -0.267 1.267 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.155 0.845 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.410 0.590 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 10.546 20.965 24.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.168 4.168 4 C -0.371 4.371 5 S 0.445 5.555 6 C -0.256 4.256 7 C -0.072 4.072 8 H 0.146 0.854 9 C -0.186 4.186 10 C -0.198 4.198 11 H 0.149 0.851 12 C 0.313 3.687 13 O -0.401 6.401 14 N -0.357 5.357 15 C -0.019 4.019 16 C 0.224 3.776 17 O -0.463 6.463 18 N -0.214 5.214 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.193 1.193 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.173 0.827 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.248 0.752 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.207 0.793 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.622 9.716 20.841 23.929 hybrid contribution -0.695 1.715 -0.703 1.979 sum -7.317 11.431 20.138 24.284 Atomic orbital electron populations 1.20438 0.90521 1.02387 1.01491 1.18562 0.96839 0.91594 1.05832 1.19800 0.92865 0.98655 1.05474 1.25581 0.99765 1.00087 1.11663 1.83785 1.04877 0.98846 1.68035 1.23273 0.96606 0.96025 1.09657 1.20429 0.99746 0.86681 1.00297 0.85414 1.23173 0.99335 0.99883 0.96200 1.22389 1.03135 1.04482 0.89821 0.85127 1.19701 0.80697 0.86082 0.82214 1.90913 1.55175 1.17662 1.76374 1.45680 1.50704 1.17968 1.21387 1.20939 0.95640 0.96369 0.88948 1.19665 0.84444 0.89176 0.84342 1.90538 1.53254 1.24172 1.78373 1.42128 1.44447 1.14565 1.20269 1.19444 1.29515 0.96508 0.98424 0.86086 1.25064 0.97191 0.98067 0.95552 1.69617 1.37692 1.33634 1.10386 0.86674 0.80348 0.83545 0.78956 1.19376 1.19952 1.19251 0.91884 0.91952 0.91868 0.85296 0.82714 0.86813 0.88150 0.75164 0.89829 0.89819 0.79261 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.72 36.00 0.35 -0.47 16 2 C -0.12 -1.39 5.80 -106.25 -0.62 -2.01 16 3 C -0.14 -1.62 9.98 -41.21 -0.41 -2.03 16 4 C -0.23 -2.83 11.23 29.04 0.33 -2.51 16 5 S 0.18 2.25 18.91 -107.50 -2.03 0.22 16 6 C -0.14 -1.70 4.60 -36.00 -0.17 -1.87 16 7 C -0.05 -0.51 5.47 -91.73 -0.50 -1.02 16 8 H 0.13 0.99 7.55 -51.93 -0.39 0.60 16 9 C -0.15 -1.35 9.75 -26.69 -0.26 -1.61 16 10 C -0.18 -1.90 6.19 -91.77 -0.57 -2.47 16 11 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 12 C 0.53 7.65 7.58 -10.99 -0.08 7.57 16 13 O -0.52 -8.64 11.34 5.55 0.06 -8.58 16 14 N -0.70 -10.97 5.53 -61.47 -0.34 -11.31 16 15 C 0.11 1.87 6.15 -5.19 -0.03 1.84 16 16 C 0.44 9.60 7.85 -10.98 -0.09 9.51 16 17 O -0.58 -14.57 15.24 5.55 0.08 -14.49 16 18 N -0.58 -13.41 5.09 -10.96 -0.06 -13.47 16 19 C -0.31 -8.56 10.16 -14.93 -0.15 -8.71 16 20 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 22 N -0.87 -24.97 13.96 55.50 0.77 -24.20 16 23 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.13 -51.92 -0.42 0.11 16 29 H 0.06 0.56 7.25 -51.93 -0.38 0.18 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.02 7.27 -51.93 -0.38 0.65 16 34 H 0.41 6.37 7.44 -40.82 -0.30 6.06 16 35 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 38 H 0.28 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -32.49 334.44 -8.10 -40.59 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -4.62 Total: 14.52 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.30 Total: -2.65 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.38 Total: -48.98 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.15 Total: -23.07 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.03 Total: 0.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.49 -8.10 -40.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367817432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.079 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds