Wall clock time and date at job start Tue Mar 31 2020 04:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47101 * 2 1 4 4 H 1.08999 * 109.58406 * 305.27469 * 3 2 1 5 5 C 1.53242 * 109.58219 * 184.99760 * 3 2 1 6 6 N 1.46377 * 109.49022 * 182.41301 * 5 3 2 7 7 S 1.65596 * 119.64924 * 245.09591 * 6 5 3 8 8 O 1.42101 * 106.40045 * 336.45449 * 7 6 5 9 9 O 1.42106 * 106.40310 * 203.53722 * 7 6 5 10 10 N 1.65597 * 107.22389 * 89.99555 * 7 6 5 11 11 C 1.46498 * 119.99910 * 270.27980 * 10 7 6 12 12 C 1.46506 * 119.99791 * 89.99756 * 10 7 6 13 13 C 1.50695 * 109.46747 * 95.00454 * 12 10 7 14 14 H 1.07999 * 120.00684 * 0.02562 * 13 12 10 15 15 C 1.37883 * 120.00101 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99651 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00252 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47115 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.46919 * 120.00230 * 17 15 13 20 20 H 1.48502 * 109.46981 * 239.99889 * 17 15 13 21 21 C 1.46385 * 120.70519 * 65.36151 * 6 5 3 22 22 C 1.53755 * 109.20511 * 294.64202 * 21 6 5 23 23 S 1.81740 * 108.75716 * 57.83014 * 22 21 6 24 24 H 1.09000 * 109.47153 * 59.99258 * 1 2 3 25 25 H 1.08998 * 109.47433 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47121 * 299.99796 * 1 2 3 27 27 H 1.08994 * 109.46844 * 240.00302 * 2 1 3 28 28 H 1.08996 * 109.47092 * 120.00238 * 2 1 3 29 29 H 1.09003 * 109.46604 * 62.41348 * 5 3 2 30 30 H 1.08994 * 109.46907 * 302.42291 * 5 3 2 31 31 H 1.08998 * 109.46661 * 269.71661 * 11 10 7 32 32 H 1.08993 * 109.47575 * 29.72374 * 11 10 7 33 33 H 1.09001 * 109.46870 * 149.72331 * 11 10 7 34 34 H 1.08999 * 109.47194 * 215.00137 * 12 10 7 35 35 H 1.08998 * 109.47440 * 335.00346 * 12 10 7 36 36 H 0.96998 * 119.99728 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46578 * 54.64476 * 21 6 5 38 38 H 1.08999 * 109.46612 * 174.63707 * 21 6 5 39 39 H 1.08994 * 109.69813 * 297.99008 * 22 21 6 40 40 H 1.09007 * 109.50610 * 177.55152 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9846 -0.8384 5 6 3.5672 1.4473 -0.1258 6 7 4.0577 2.8252 -0.0677 7 16 4.7938 3.4893 -1.3941 8 8 5.2890 2.4026 -2.1643 9 8 5.6201 4.5395 -0.9107 10 7 3.6106 4.2064 -2.3040 11 6 2.9149 3.4371 -3.3386 12 6 3.2552 5.6083 -2.0701 13 6 4.0208 6.4866 -3.0258 14 1 4.7034 6.0449 -3.7366 15 6 3.8490 7.8543 -2.9935 16 7 3.0173 8.3923 -2.1282 17 14 4.7974 8.9431 -4.1786 18 1 5.6611 8.0992 -5.0430 19 1 3.8426 9.7039 -5.0239 20 1 5.6430 9.8919 -3.4104 21 6 3.9096 3.6206 1.1522 22 6 2.4150 3.8627 1.4198 23 16 1.5782 2.2554 1.5586 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8548 0.9992 -1.0769 30 1 4.0009 0.8725 0.6925 31 1 3.4449 3.5396 -4.2856 32 1 2.8843 2.3862 -3.0513 33 1 1.8978 3.8133 -3.4489 34 1 2.1855 5.7435 -2.2299 35 1 3.5068 5.8808 -1.0452 36 1 2.8968 9.3545 -2.1052 37 1 4.3491 3.0826 1.9922 38 1 4.4183 4.5764 1.0267 39 1 1.9816 4.4303 0.5964 40 1 2.2971 4.4175 2.3507 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408236603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:34 Heat of formation + Delta-G solvation = -79.762861 kcal Electronic energy + Delta-G solvation = -23079.594030 eV Core-core repulsion = 19761.234917 eV Total energy + Delta-G solvation = -3318.359113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -37.63457 -36.83229 -35.56573 -35.28034 -34.76491 -32.48784 -30.72259 -28.56276 -27.84599 -25.14527 -24.07753 -22.55647 -22.12323 -21.56609 -18.75021 -17.67078 -16.97531 -16.52356 -16.13597 -15.98207 -15.18444 -15.00687 -14.70505 -14.31200 -13.91626 -13.55367 -13.45812 -13.27705 -13.18164 -12.79323 -12.45091 -12.16606 -12.12041 -11.99505 -11.72341 -11.57994 -11.42732 -11.26243 -11.21319 -11.16582 -11.07043 -10.75233 -10.72753 -10.58817 -10.07879 -9.85620 -9.71651 -9.19828 -8.49295 -8.13376 -7.62481 -6.11488 -4.15342 1.04203 1.74209 2.52015 3.27739 3.28468 3.35893 3.41517 3.94526 4.40881 4.44954 4.64681 4.78592 4.86695 4.93597 5.00185 5.16543 5.22826 5.33363 5.35577 5.41965 5.45610 5.54755 5.66939 5.70902 5.78718 5.90674 5.94504 5.96583 6.03481 6.13757 6.23613 6.40656 6.60923 7.11943 7.30848 7.51606 7.86056 8.14532 8.87185 9.50337 10.97106 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.004959 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.376425 B = 5645.450076 C = 5867.018185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C -0.070 4.070 4 H 0.094 0.906 5 C 0.121 3.879 6 N -1.014 6.014 7 S 2.776 3.224 8 O -0.993 6.993 9 O -0.958 6.958 10 N -0.996 5.996 11 C 0.108 3.892 12 C 0.258 3.742 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.118 3.882 22 C -0.102 4.102 23 S -0.254 6.254 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.530 -14.930 6.391 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.201 4.201 4 H 0.112 0.888 5 C -0.007 4.007 6 N -0.850 5.850 7 S 2.785 3.215 8 O -0.977 6.977 9 O -0.942 6.942 10 N -0.839 5.839 11 C -0.038 4.038 12 C 0.136 3.864 13 C -0.568 4.568 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.009 4.009 22 C -0.252 4.252 23 S -0.028 6.028 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.314 -15.154 7.101 17.282 hybrid contribution 0.659 1.339 -1.506 2.121 sum -3.655 -13.815 5.594 15.346 Atomic orbital electron populations 1.21801 0.94862 1.01644 1.02764 1.21342 0.96851 0.92948 1.03047 1.23733 0.98822 0.99632 0.97882 0.88801 1.21539 0.91737 0.82880 1.04538 1.58308 1.76913 1.21225 1.28594 1.02243 0.74043 0.72602 0.72648 1.93525 1.78522 1.55921 1.69687 1.93622 1.64349 1.55737 1.80469 1.57709 1.57173 1.22098 1.46931 1.21212 0.97800 0.93215 0.91593 1.19069 0.96804 0.73344 0.97133 1.21504 1.25068 0.91455 1.18757 0.92162 1.24924 0.95265 0.97911 0.95853 1.69919 1.36085 1.11730 1.35719 0.86458 0.79830 0.80435 0.80843 1.19640 1.20929 1.20754 1.21591 0.94728 0.97114 0.87488 1.24015 0.98084 0.96275 1.06846 1.86581 1.69610 1.18208 1.28365 0.92458 0.92591 0.91709 0.90406 0.90863 0.88119 0.89873 0.92977 0.93218 0.91463 0.94779 0.94634 0.92706 0.89934 0.87285 0.88698 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.75 37.16 0.36 -0.97 16 2 C -0.10 -0.91 5.41 -26.73 -0.14 -1.06 16 3 C -0.07 -0.79 2.75 -26.61 -0.07 -0.86 16 4 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 5 C 0.12 1.47 5.54 -3.98 -0.02 1.45 16 6 N -1.01 -15.08 3.14 -113.99 -0.36 -15.44 16 7 S 2.78 53.86 6.00 -107.50 -0.64 53.22 16 8 O -0.99 -20.09 15.70 -57.17 -0.90 -20.98 16 9 O -0.96 -22.23 15.59 -57.17 -0.89 -23.12 16 10 N -1.00 -20.03 3.22 -123.06 -0.40 -20.43 16 11 C 0.11 1.81 10.33 59.85 0.62 2.43 16 12 C 0.26 6.25 5.12 -5.19 -0.03 6.23 16 13 C -0.53 -14.62 9.38 -34.44 -0.32 -14.94 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -25.60 13.29 55.43 0.74 -24.86 16 17 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.12 1.62 6.29 -3.71 -0.02 1.59 16 22 C -0.10 -1.32 6.68 37.55 0.25 -1.07 16 23 S -0.25 -3.10 20.53 -107.50 -2.21 -5.30 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.63 7.18 -51.92 -0.37 0.26 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.22 6.80 -51.93 -0.35 0.87 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 33 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 34 H 0.03 0.84 7.96 -51.93 -0.41 0.43 16 35 H 0.04 0.90 7.61 -51.93 -0.40 0.51 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 1.67 6.80 -51.93 -0.35 1.32 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -32.18 344.67 -10.44 -42.62 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.48 Total: -1.97 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.52 Total: -5.55 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.02 Total: -60.74 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -1.79 Total: -44.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 50.76 SS G_CDS: -2.85 Total: 47.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.18 -10.44 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408236603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.142 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds