Wall clock time and date at job start Tue Mar 31 2020 05:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47332 * 2 1 4 4 C 1.46500 * 119.99933 * 275.00120 * 3 2 1 5 5 C 1.50699 * 109.47386 * 279.38255 * 4 3 2 6 6 H 1.08002 * 119.99446 * 4.92129 * 5 4 3 7 7 C 1.37873 * 120.00015 * 184.91372 * 5 4 3 8 8 N 1.31517 * 120.00252 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47280 * 60.00240 * 9 7 5 11 11 H 1.48494 * 109.47410 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46974 * 300.00273 * 9 7 5 13 13 S 1.65600 * 119.99885 * 94.99794 * 3 2 1 14 14 O 1.42109 * 106.40012 * 144.87329 * 13 3 2 15 15 O 1.42094 * 106.40308 * 11.95581 * 13 3 2 16 16 N 1.65603 * 107.22052 * 258.40968 * 13 3 2 17 17 C 1.46499 * 119.99598 * 61.65689 * 16 13 3 18 18 H 1.09004 * 108.70822 * 20.67105 * 17 16 13 19 19 C 1.54259 * 108.86945 * 262.21081 * 17 16 13 20 20 S 1.83957 * 102.57953 * 263.71003 * 19 17 16 21 21 C 1.83956 * 94.80697 * 325.50550 * 20 19 17 22 22 H 1.09002 * 110.78955 * 276.22162 * 21 20 19 23 23 C 1.52998 * 110.78934 * 152.76609 * 21 20 19 24 24 C 1.52334 * 108.86681 * 139.13113 * 17 16 13 25 25 H 1.08999 * 109.46982 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46829 * 300.00010 * 1 2 3 27 27 H 1.09004 * 109.47036 * 59.99712 * 1 2 3 28 28 H 1.09001 * 109.47050 * 239.99877 * 2 1 3 29 29 H 1.08994 * 109.47121 * 120.00252 * 2 1 3 30 30 H 1.09003 * 109.47456 * 39.38819 * 4 3 2 31 31 H 1.09003 * 109.46919 * 159.38815 * 4 3 2 32 32 H 0.97001 * 119.99620 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00161 * 241.65716 * 16 13 3 34 34 H 1.08996 * 110.79103 * 21.97938 * 19 17 16 35 35 H 1.08997 * 110.78918 * 145.44120 * 19 17 16 36 36 H 1.09007 * 109.47068 * 306.83939 * 23 21 20 37 37 H 1.09001 * 109.47146 * 66.83940 * 23 21 20 38 38 H 1.08998 * 109.47793 * 186.84218 * 23 21 20 39 39 H 1.09001 * 108.86964 * 0.02562 * 24 17 16 40 40 H 1.09003 * 108.75454 * 241.56288 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4464 1.7068 -1.9349 6 1 4.0568 0.9250 -1.5075 7 6 3.8456 2.3371 -3.0944 8 7 3.1024 3.2894 -3.6145 9 14 5.4420 1.8385 -3.9265 10 1 5.3770 0.4034 -4.3025 11 1 5.6426 2.6616 -5.1461 12 1 6.5757 2.0546 -2.9920 13 16 2.4122 2.1201 1.4287 14 8 3.5205 2.9653 1.1512 15 8 2.4426 1.0972 2.4145 16 7 1.1521 3.1176 1.8284 17 6 -0.1788 2.5553 2.0705 18 1 -0.0734 1.4958 2.3045 19 6 -1.0230 2.7013 0.7878 20 16 -1.9668 4.2484 1.1033 21 6 -2.1329 3.9614 2.9127 22 1 -2.9800 3.3091 3.1248 23 6 -2.2661 5.2882 3.6630 24 6 -0.8030 3.2640 3.2658 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3186 1.8687 -1.9162 31 1 2.1704 3.1806 -1.0667 32 1 3.3835 3.7330 -4.4301 33 1 1.2953 4.0741 1.9021 34 1 -0.3820 2.8109 -0.0869 35 1 -1.6980 1.8536 0.6703 36 1 -1.4409 5.9453 3.3884 37 1 -3.2114 5.7619 3.3983 38 1 -2.2408 5.1026 4.7368 39 1 -0.1018 4.0107 3.6385 40 1 -0.9870 2.5308 4.0511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416587262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:49 Heat of formation + Delta-G solvation = -79.896375 kcal Electronic energy + Delta-G solvation = -22984.473431 eV Core-core repulsion = 19666.108529 eV Total energy + Delta-G solvation = -3318.364903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -37.89713 -36.60628 -36.08505 -35.21999 -33.66640 -32.68644 -30.36373 -29.67937 -27.05672 -26.58761 -23.31628 -23.09675 -21.80923 -20.57329 -18.98528 -17.66701 -16.89479 -16.53477 -16.23416 -16.15524 -15.43376 -15.08744 -14.48281 -14.33132 -13.85193 -13.58995 -13.27845 -13.09580 -12.95101 -12.82613 -12.36435 -12.12863 -12.00467 -11.82262 -11.73441 -11.52616 -11.42478 -11.36610 -11.09474 -10.99908 -10.95084 -10.85851 -10.51030 -10.41777 -10.04514 -9.93152 -9.77797 -9.48146 -8.45411 -8.12140 -7.71219 -6.06964 -4.10848 1.18206 1.78341 2.26361 3.33112 3.37371 3.39031 3.42736 4.03882 4.29542 4.44403 4.48362 4.69887 4.78593 4.91768 4.96752 5.09519 5.25444 5.27935 5.34909 5.43101 5.45672 5.60625 5.65060 5.67288 5.68844 5.86876 5.88650 5.94684 6.10781 6.25370 6.51849 6.60234 7.08061 7.21480 7.37383 7.59533 7.90510 8.19730 8.91270 9.54545 11.01557 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.004894 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.137942 B = 5719.918507 C = 6097.431800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.777 3.223 14 O -0.963 6.963 15 O -1.000 7.000 16 N -1.124 6.124 17 C 0.152 3.848 18 H 0.101 0.899 19 C -0.087 4.087 20 S -0.291 6.291 21 C -0.041 4.041 22 H 0.096 0.904 23 C -0.133 4.133 24 C -0.130 4.130 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.416 0.584 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 -1.233 12.924 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.010 4.010 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.785 3.215 14 O -0.947 6.947 15 O -0.983 6.983 16 N -0.882 5.882 17 C 0.042 3.958 18 H 0.119 0.881 19 C -0.236 4.236 20 S -0.065 6.065 21 C -0.170 4.170 22 H 0.114 0.886 23 C -0.192 4.192 24 C -0.171 4.171 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.001 -0.517 12.511 17.344 hybrid contribution 0.911 -0.635 -0.211 1.131 sum -11.090 -1.152 12.300 16.601 Atomic orbital electron populations 1.22585 0.97616 1.01876 1.01986 1.21141 0.92977 0.83248 1.03590 1.57716 1.81081 1.21380 1.23150 1.19011 0.97267 0.91059 0.78913 1.21419 1.06545 1.20352 1.08449 0.92133 1.24927 0.97216 0.94752 0.97067 1.69906 1.38134 1.24164 1.21213 0.86581 0.83890 0.78408 0.78704 1.20216 1.21218 1.20032 1.02097 0.73236 0.73100 0.73065 1.93658 1.48271 1.67973 1.84769 1.93519 1.86958 1.58478 1.59373 1.56466 1.22860 1.21873 1.87050 1.21240 0.83460 0.98776 0.92280 0.88138 1.25111 1.00386 0.96121 1.02019 1.88188 1.74427 1.33760 1.10112 1.23877 0.99926 1.00228 0.92946 0.88604 1.21682 1.03109 0.94820 0.99544 1.22468 0.95899 1.00751 0.97952 0.92016 0.92986 0.91703 0.89575 0.90550 0.95083 0.94409 0.92629 0.75042 0.85886 0.88221 0.91244 0.91869 0.91312 0.89195 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 8.95 37.16 0.33 -1.98 16 2 C 0.12 1.91 6.31 -4.04 -0.03 1.88 16 3 N -0.99 -19.28 2.84 -115.66 -0.33 -19.60 16 4 C 0.26 6.18 5.11 -5.19 -0.03 6.16 16 5 C -0.53 -14.46 9.34 -34.44 -0.32 -14.78 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 S 2.78 52.62 5.92 -107.50 -0.64 51.99 16 14 O -0.96 -22.70 17.47 -57.17 -1.00 -23.70 16 15 O -1.00 -19.53 16.01 -57.17 -0.92 -20.45 16 16 N -1.12 -16.20 5.23 -4.62 -0.02 -16.23 16 17 C 0.15 1.81 2.93 -67.61 -0.20 1.61 16 18 H 0.10 1.16 5.81 -51.93 -0.30 0.86 16 19 C -0.09 -1.07 5.23 37.82 0.20 -0.87 16 20 S -0.29 -3.67 22.74 -107.50 -2.44 -6.12 16 21 C -0.04 -0.37 3.93 -26.07 -0.10 -0.47 16 22 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 23 C -0.13 -1.04 9.19 37.16 0.34 -0.70 16 24 C -0.13 -1.23 5.72 -26.41 -0.15 -1.38 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.59 3.45 -51.93 -0.18 0.41 16 27 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 28 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16 29 H 0.08 1.20 6.88 -51.93 -0.36 0.84 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.04 0.97 7.78 -51.93 -0.40 0.57 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.42 5.56 8.69 -34.47 -0.30 5.26 16 34 H 0.12 1.80 7.91 -51.93 -0.41 1.39 16 35 H 0.10 1.04 6.98 -51.93 -0.36 0.68 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.84 7.27 -51.93 -0.38 0.46 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -33.06 340.55 -10.58 -43.65 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.03 Total: 2.66 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.05 Total: -8.88 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.38 Total: -60.97 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -1.91 Total: -44.14 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 48.95 SS G_CDS: -3.08 Total: 45.87 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.06 -10.58 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416587262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.250 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds