Wall clock time and date at job start Tue Mar 31 2020 04:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48495 * 109.46810 * 90.00382 * 3 2 1 5 5 H 1.48500 * 109.46874 * 210.00296 * 3 2 1 6 6 H 1.48491 * 109.46863 * 330.00145 * 3 2 1 7 7 C 1.37878 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00125 * 359.97438 * 7 2 1 10 10 O 1.42901 * 112.94427 * 50.33238 * 9 7 2 11 11 C 1.53946 * 113.74203 * 278.74425 * 9 7 2 12 12 N 1.47808 * 86.03477 * 222.08490 * 11 9 7 13 13 C 1.34777 * 134.45562 * 204.64151 * 12 11 9 14 14 O 1.21594 * 120.00471 * 174.53506 * 13 12 11 15 15 C 1.47532 * 120.00133 * 354.53957 * 13 12 11 16 16 C 1.39715 * 120.19043 * 335.28090 * 15 13 12 17 17 C 1.37787 * 119.90940 * 179.76543 * 16 15 13 18 18 C 1.38552 * 120.29943 * 0.51216 * 17 16 15 19 19 N 1.48014 * 119.80401 * 179.76077 * 18 17 16 20 20 O 1.21798 * 119.99743 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00428 * 359.97438 * 19 18 17 22 22 C 1.38054 * 120.38931 * 359.74375 * 18 17 16 23 23 C 1.38710 * 120.08690 * 359.97438 * 22 18 17 24 24 O 1.35652 * 120.15289 * 180.02562 * 23 22 18 25 25 C 1.47579 * 91.05328 * 24.54970 * 12 11 9 26 26 H 0.97003 * 120.00539 * 0.02562 * 1 2 3 27 27 H 0.96697 * 114.00313 * 309.67284 * 10 9 7 28 28 H 1.09005 * 113.76969 * 336.34581 * 11 9 7 29 29 H 1.08997 * 113.77093 * 107.74231 * 11 9 7 30 30 H 1.07999 * 120.04083 * 0.02562 * 16 15 13 31 31 H 1.07994 * 119.84875 * 180.25536 * 17 16 15 32 32 H 1.08001 * 119.95865 * 180.02562 * 22 18 17 33 33 H 0.96701 * 113.99547 * 269.97592 * 24 23 22 34 34 H 1.09002 * 113.76905 * 221.15105 * 25 12 11 35 35 H 1.09001 * 113.77066 * 89.75730 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4000 5 1 3.5466 1.4402 -0.7001 6 1 1.4465 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0131 11 6 0.7562 -2.9292 1.3924 12 7 1.1920 -4.2900 1.0142 13 6 0.8428 -5.5338 1.3981 14 8 1.3147 -6.5002 0.8309 15 6 -0.1122 -5.7228 2.5066 16 6 -0.2657 -4.7310 3.4786 17 6 -1.1628 -4.9115 4.5087 18 6 -1.9067 -6.0775 4.5916 19 7 -2.8634 -6.2622 5.7058 20 8 -3.5194 -7.2855 5.7818 21 8 -2.9947 -5.3908 6.5466 22 6 -1.7610 -7.0679 3.6409 23 6 -0.8668 -6.9005 2.5938 24 8 -0.7230 -7.8726 1.6586 25 6 2.1609 -3.7401 0.0462 26 1 -0.4851 0.8400 -0.0004 27 1 -0.3474 -1.7970 -1.0268 28 1 1.3275 -2.4974 2.2142 29 1 -0.3214 -2.8326 1.5249 30 1 0.3150 -3.8223 3.4202 31 1 -1.2837 -4.1424 5.2572 32 1 -2.3447 -7.9738 3.7120 33 1 -0.0434 -8.5265 1.8724 34 1 2.2027 -4.2899 -0.8940 35 1 3.1457 -3.5471 0.4718 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436991940.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:32 Heat of formation + Delta-G solvation = -57.703952 kcal Electronic energy + Delta-G solvation = -25061.101737 eV Core-core repulsion = 21029.669253 eV Total energy + Delta-G solvation = -4031.432484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37697 -40.67143 -39.22854 -37.43670 -37.06414 -36.72008 -34.16985 -32.44894 -32.34287 -30.55474 -28.96069 -27.06032 -25.64113 -25.37967 -23.35119 -22.92759 -20.56788 -19.93598 -19.00590 -18.89632 -17.77387 -17.71026 -17.60406 -16.95795 -16.43751 -15.74547 -15.48078 -15.24298 -14.67055 -14.51203 -14.23056 -14.00548 -13.38150 -13.02056 -12.79441 -12.54058 -12.31136 -12.18128 -11.79091 -11.71124 -11.57816 -11.30839 -11.29148 -11.14438 -11.07295 -10.64836 -10.45318 -9.97844 -9.80284 -9.46831 -9.36998 -8.91523 -8.62571 -8.10730 -6.52580 -4.63968 -0.54870 0.57349 0.95793 1.14432 2.56167 3.05828 3.06234 3.15953 3.19138 3.36774 3.66459 4.07758 4.11231 4.32613 4.34301 4.58861 4.72640 4.79402 5.19363 5.31417 5.37429 5.42314 5.61216 5.73603 5.84841 5.93123 6.16287 6.17880 6.20747 6.36366 6.45138 6.89844 7.30566 7.45271 7.49672 7.65657 8.10815 8.34866 8.40168 9.08055 9.27362 10.54247 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.003885 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.299699 B = 7206.218442 C = 8377.791283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.068 3.932 12 N -0.622 5.622 13 C 0.568 3.432 14 O -0.541 6.541 15 C -0.093 4.093 16 C -0.070 4.070 17 C -0.071 4.071 18 C -0.016 4.016 19 N 0.028 4.972 20 O -0.159 6.159 21 O -0.153 6.153 22 C -0.095 4.095 23 C 0.165 3.835 24 O -0.468 6.468 25 C 0.114 3.886 26 H 0.275 0.725 27 H 0.393 0.607 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.404 0.596 34 H 0.075 0.925 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -7.849 8.322 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.199 3.801 10 O -0.383 6.383 11 C -0.054 4.054 12 N -0.355 5.355 13 C 0.356 3.644 14 O -0.421 6.421 15 C -0.097 4.097 16 C -0.089 4.089 17 C -0.090 4.090 18 C -0.099 4.099 19 N 0.548 4.452 20 O -0.375 6.375 21 O -0.370 6.370 22 C -0.115 4.115 23 C 0.117 3.883 24 O -0.280 6.280 25 C -0.007 4.007 26 H 0.085 0.915 27 H 0.248 0.752 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.180 0.820 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.448 -8.605 7.082 11.153 hybrid contribution 0.085 1.129 0.795 1.383 sum -0.363 -7.476 7.876 10.865 Atomic orbital electron populations 1.69388 1.06207 1.28424 1.49625 1.25071 0.95022 0.99953 0.92864 0.86321 0.79865 0.81876 0.78449 1.20237 1.19487 1.20833 1.21475 0.93977 0.89759 1.52683 0.90890 1.19811 0.85646 0.91296 0.83297 1.86078 1.47037 1.49941 1.55242 1.24585 1.00369 0.77072 1.03388 1.50187 1.39763 1.04370 1.41134 1.17417 0.81756 0.82657 0.82570 1.90748 1.56588 1.39134 1.55607 1.21106 0.96801 0.95131 0.96680 1.21631 0.96581 0.99028 0.91703 1.21023 0.93423 0.95429 0.99097 1.21025 0.97921 0.99203 0.91727 1.43592 1.00201 1.00034 1.01337 1.94542 1.43948 1.17616 1.81400 1.94550 1.71493 1.36771 1.34223 1.21206 0.99136 0.99803 0.91353 1.18040 0.93268 0.89368 0.87576 1.84760 1.61283 1.39010 1.42938 1.23558 0.93158 0.92617 0.91383 0.91512 0.75209 0.89389 0.90826 0.82013 0.82071 0.81876 0.73650 0.90650 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.34 11.20 55.43 0.62 -20.72 16 2 C 0.07 1.72 5.40 -17.82 -0.10 1.63 16 3 Si 0.91 18.33 29.54 -169.99 -5.02 13.31 16 4 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.54 -12.53 8.61 -34.44 -0.30 -12.82 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.24 5.30 1.40 -90.85 -0.13 5.17 16 10 O -0.57 -13.86 13.48 -35.23 -0.48 -14.34 16 11 C 0.07 1.28 5.69 -2.84 -0.02 1.26 16 12 N -0.62 -11.73 3.58 -179.37 -0.64 -12.37 16 13 C 0.57 10.40 7.76 -12.47 -0.10 10.30 16 14 O -0.54 -11.04 16.29 -14.96 -0.24 -11.29 16 15 C -0.09 -1.38 5.83 -104.84 -0.61 -1.99 16 16 C -0.07 -0.88 8.82 -39.19 -0.35 -1.22 16 17 C -0.07 -0.80 9.53 -39.63 -0.38 -1.17 16 18 C -0.02 -0.19 6.85 -79.90 -0.55 -0.74 16 19 N 0.03 0.38 4.45 33.99 0.15 0.53 16 20 O -0.16 -2.20 18.43 -29.46 -0.54 -2.75 16 21 O -0.15 -2.12 18.43 -29.46 -0.54 -2.66 16 22 C -0.10 -1.11 9.48 -39.47 -0.37 -1.48 16 23 C 0.17 2.18 6.69 -38.69 -0.26 1.92 16 24 O -0.47 -6.14 11.87 -38.90 -0.46 -6.60 16 25 C 0.11 2.24 8.23 -2.97 -0.02 2.22 16 26 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 27 H 0.39 9.65 6.60 45.56 0.30 9.95 16 28 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 29 H 0.07 1.40 7.86 -51.93 -0.41 0.99 16 30 H 0.16 1.91 5.54 -52.49 -0.29 1.62 16 31 H 0.16 1.51 7.59 -52.49 -0.40 1.11 16 32 H 0.16 1.61 7.59 -52.49 -0.40 1.21 16 33 H 0.40 3.60 9.05 45.56 0.41 4.01 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 LS Contribution 317.18 15.07 4.78 4.78 Total: -1.00 -28.05 317.18 -7.12 -35.17 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -1.57 Total: 13.86 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.17 Total: 3.08 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.13 Total: -32.56 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -2.27 Total: -37.64 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.05 -7.12 -35.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436991940.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.537 kcal (2) G-P(sol) polarization free energy of solvation -28.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds