Wall clock time and date at job start Tue Mar 31 2020 03:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.32212 * 119.82062 * 2 1 4 4 O 1.21259 * 122.89479 * 359.97438 * 3 2 1 5 5 C 1.51111 * 114.20670 * 179.97438 * 3 2 1 6 6 S 1.82391 * 103.49760 * 359.79568 * 5 3 2 7 7 C 1.36759 * 119.81893 * 180.02562 * 2 1 3 8 8 C 1.36440 * 126.26685 * 359.95901 * 7 2 1 9 9 C 1.40408 * 119.99984 * 351.31804 * 8 7 2 10 10 O 1.21920 * 119.99906 * 309.55224 * 9 8 7 11 11 N 1.34777 * 119.99835 * 129.83153 * 9 8 7 12 12 C 1.40577 * 119.99736 * 179.72416 * 11 9 8 13 13 C 1.40665 * 126.08140 * 359.68521 * 12 11 9 14 14 N 1.30913 * 108.38853 * 179.87635 * 13 12 11 15 15 N 1.40070 * 108.40696 * 0.39151 * 14 13 12 16 16 C 1.37312 * 126.06660 * 179.73550 * 15 14 13 17 17 H 1.08001 * 120.00104 * 180.02562 * 16 15 14 18 18 C 1.38989 * 120.00356 * 0.02562 * 16 15 14 19 19 N 1.31289 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47273 * 60.00076 * 20 18 16 22 22 H 1.48499 * 109.46886 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47355 * 300.00028 * 20 18 16 24 24 C 1.35670 * 126.08342 * 180.02562 * 12 11 9 25 25 H 1.08993 * 109.47426 * 274.77643 * 1 2 3 26 26 H 1.08999 * 109.47266 * 34.77974 * 1 2 3 27 27 H 1.09004 * 109.47250 * 154.77430 * 1 2 3 28 28 H 1.09000 * 110.61873 * 118.49777 * 5 3 2 29 29 H 1.08998 * 110.62099 * 241.34251 * 5 3 2 30 30 H 1.07999 * 119.99944 * 171.31284 * 8 7 2 31 31 H 0.96997 * 120.00447 * 359.72896 * 11 9 8 32 32 H 1.08000 * 125.80160 * 0.04377 * 13 12 11 33 33 H 0.97009 * 119.99724 * 179.97438 * 19 18 16 34 34 H 1.08001 * 126.25023 * 359.95326 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1224 1.1471 0.0000 4 8 1.5666 2.2247 -0.0005 5 6 3.6263 0.9992 0.0006 6 16 3.8765 -0.8074 0.0074 7 6 2.1450 -1.1865 -0.0005 8 6 1.5919 -2.4338 -0.0003 9 6 0.2086 -2.5883 0.1841 10 8 -0.3468 -2.0383 1.1197 11 7 -0.5042 -3.3492 -0.6700 12 6 -1.8882 -3.5086 -0.4820 13 6 -2.6546 -2.9409 0.5520 14 7 -3.9001 -3.3117 0.3942 15 7 -3.9767 -4.1347 -0.7367 16 6 -5.1128 -4.7281 -1.2292 17 1 -5.0592 -5.3473 -2.1124 18 6 -6.3319 -4.5320 -0.5910 19 7 -6.3972 -3.7789 0.4824 20 14 -7.8773 -5.3399 -1.2607 21 1 -7.7050 -6.8149 -1.2596 22 1 -9.0359 -4.9767 -0.4057 23 1 -8.1194 -4.8709 -2.6488 24 6 -2.7212 -4.2426 -1.2617 25 1 -0.3634 0.0856 1.0240 26 1 -0.3634 0.8441 -0.5862 27 1 -0.3634 -0.9297 -0.4380 28 1 4.0563 1.4459 -0.8959 29 1 4.0558 1.4488 0.8959 30 1 2.2182 -3.3022 -0.1420 31 1 -0.0623 -3.7869 -1.4143 32 1 -2.2797 -2.3048 1.3402 33 1 -7.2481 -3.6417 0.9276 34 1 -2.4421 -4.8087 -2.1381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874254129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:29 Heat of formation + Delta-G solvation = 77.171915 kcal Electronic energy + Delta-G solvation = -22420.597939 eV Core-core repulsion = 18870.059734 eV Total energy + Delta-G solvation = -3550.538205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44966 -40.04224 -38.93467 -36.78876 -34.24132 -33.22199 -31.94380 -31.13852 -30.22278 -27.95133 -26.85882 -25.11270 -23.81581 -21.51527 -20.88400 -19.70610 -19.35609 -18.50577 -17.58889 -17.06996 -16.84592 -16.02366 -15.67812 -15.47276 -15.25824 -14.72697 -14.39417 -14.14364 -13.82452 -13.62765 -13.26016 -13.10066 -12.96357 -12.75018 -11.73454 -11.67356 -11.60547 -11.52275 -11.45343 -11.17443 -10.98972 -10.57724 -10.53467 -9.99653 -9.36805 -9.18571 -9.04021 -8.83524 -8.09882 -7.96935 -6.71677 -6.57950 -4.25123 0.69203 0.82846 1.25063 2.21549 2.44065 2.86964 3.03572 3.05782 3.07768 3.60629 3.66171 3.72269 3.96003 4.39125 4.46715 4.73305 4.78380 5.00056 5.04637 5.30327 5.45135 5.59669 5.61519 5.90099 6.08649 6.22074 6.43465 6.72650 6.86771 6.92051 7.08590 7.20950 7.31148 7.83093 8.12363 8.24537 8.58590 8.78887 9.34810 9.64160 10.37831 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.036081 B = 0.002965 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.843204 B = 9440.997542 C = 9873.663027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.538 5.538 3 C 0.518 3.482 4 O -0.489 6.489 5 C -0.141 4.141 6 S -0.074 6.074 7 C 0.164 3.836 8 C -0.220 4.220 9 C 0.542 3.458 10 O -0.539 6.539 11 N -0.616 5.616 12 C -0.064 4.064 13 C -0.031 4.031 14 N -0.261 5.261 15 N -0.141 5.141 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.047 3.953 19 N -0.769 5.769 20 Si 0.934 3.066 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.083 4.083 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.160 0.840 31 H 0.399 0.601 32 H 0.177 0.823 33 H 0.276 0.724 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.045 3.430 -4.110 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.259 5.259 3 C 0.305 3.695 4 O -0.363 6.363 5 C -0.292 4.292 6 S 0.166 5.834 7 C -0.048 4.048 8 C -0.257 4.257 9 C 0.330 3.670 10 O -0.421 6.421 11 N -0.258 5.258 12 C -0.170 4.170 13 C -0.207 4.207 14 N -0.092 5.092 15 N 0.091 4.909 16 C -0.456 4.456 17 H 0.133 0.867 18 C -0.171 4.171 19 N -0.395 5.395 20 Si 0.758 3.242 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.234 4.234 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.177 0.823 31 H 0.233 0.767 32 H 0.193 0.807 33 H 0.086 0.914 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 17.113 4.063 -2.809 17.811 hybrid contribution -0.557 -0.145 -1.068 1.214 sum 16.555 3.919 -3.877 17.449 Atomic orbital electron populations 1.22899 0.74831 1.04835 1.05095 1.44703 1.10483 1.04481 1.66280 1.19718 0.88895 0.83974 0.76949 1.90829 1.71862 1.26051 1.47563 1.24410 0.96975 0.97182 1.10652 1.86742 1.00942 1.03060 1.92670 1.21953 0.93555 0.88290 1.01011 1.20874 0.96421 0.94331 1.14100 1.16064 0.86399 0.80659 0.83840 1.90866 1.71666 1.48041 1.31484 1.42677 1.06704 1.47933 1.28530 1.17283 0.82547 1.13274 1.03863 1.24139 0.90784 1.05198 1.00590 1.78271 1.16529 1.11443 1.02934 1.44555 1.04175 1.26772 1.15361 1.19831 0.83475 1.29654 1.12620 0.86652 1.25637 0.99869 0.96174 0.95395 1.70203 1.26711 1.28453 1.14172 0.85899 0.79517 0.79613 0.79150 1.19152 1.20126 1.19153 1.21279 0.86300 1.11528 1.04307 0.88990 0.90975 0.87781 0.83780 0.83672 0.82255 0.76744 0.80656 0.91376 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 8.36 59.85 0.50 1.53 16 2 N -0.54 -7.22 2.95 -122.27 -0.36 -7.58 16 3 C 0.52 6.44 7.79 -11.91 -0.09 6.35 16 4 O -0.49 -7.61 17.01 5.58 0.09 -7.51 16 5 C -0.14 -1.07 7.36 36.21 0.27 -0.80 16 6 S -0.07 -0.63 23.35 -107.50 -2.51 -3.14 16 7 C 0.16 1.95 6.99 -16.00 -0.11 1.84 16 8 C -0.22 -2.69 9.70 -39.41 -0.38 -3.07 16 9 C 0.54 8.77 4.54 -15.44 -0.07 8.70 16 10 O -0.54 -10.58 10.50 4.99 0.05 -10.53 16 11 N -0.62 -10.15 5.43 -12.89 -0.07 -10.22 16 12 C -0.06 -1.39 6.90 -83.85 -0.58 -1.97 16 13 C -0.03 -0.79 10.85 -17.03 -0.18 -0.98 16 14 N -0.26 -7.40 10.40 30.80 0.32 -7.08 16 15 N -0.14 -3.79 3.74 -11.41 -0.04 -3.83 16 16 C -0.32 -8.41 10.25 -14.82 -0.15 -8.57 16 17 H 0.12 2.67 7.83 -52.49 -0.41 2.25 16 18 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 19 N -0.77 -21.24 11.81 55.49 0.66 -20.58 16 20 Si 0.93 18.68 29.55 -169.99 -5.02 13.66 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.08 -1.88 11.49 -16.39 -0.19 -2.07 16 25 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 26 H 0.07 1.10 7.63 -51.93 -0.40 0.70 16 27 H 0.10 1.75 4.35 -51.93 -0.23 1.53 16 28 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.40 5.03 8.78 -40.82 -0.36 4.67 16 32 H 0.18 4.36 5.91 -52.49 -0.31 4.05 16 33 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 308.15 15.07 4.64 4.64 Total: -1.00 -33.45 308.15 -6.23 -39.68 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -2.90 Total: 10.46 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.09 Total: 2.04 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.50 Total: -49.29 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.15 Total: -18.04 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -2.51 Total: -3.14 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.45 -6.23 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874254129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.847 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds