Wall clock time and date at job start Tue Mar 31 2020 03:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99902 * 2 1 4 4 H 1.48492 * 109.46788 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47192 * 300.00266 * 3 2 1 6 6 H 1.48501 * 109.46524 * 59.99982 * 3 2 1 7 7 C 1.37879 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00161 * 359.97438 * 7 2 1 10 10 N 1.46909 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.47958 * 110.99817 * 169.99831 * 10 9 7 12 12 C 1.53934 * 86.18040 * 222.41961 * 11 10 9 13 13 O 1.42896 * 113.73451 * 138.08384 * 12 11 10 14 14 C 1.35522 * 117.00018 * 151.90326 * 13 12 11 15 15 N 1.32692 * 120.58141 * 0.02562 * 14 13 12 16 16 C 1.32546 * 120.67348 * 179.97438 * 15 14 13 17 17 O 1.35523 * 118.74025 * 179.97438 * 16 15 14 18 18 N 1.31543 * 122.52607 * 359.97438 * 16 15 14 19 19 C 1.34969 * 120.98381 * 0.03836 * 18 16 15 20 20 N 1.33427 * 130.35196 * 179.97438 * 19 18 16 21 21 C 1.28354 * 117.97480 * 179.97438 * 20 19 18 22 22 S 1.70761 * 111.33001 * 359.74561 * 21 20 19 23 23 C 1.39785 * 120.58019 * 179.97438 * 14 13 12 24 24 C 1.48189 * 111.06754 * 70.56882 * 10 9 7 25 25 H 0.96997 * 120.00442 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47665 * 60.00535 * 9 7 2 27 27 H 1.08998 * 109.47371 * 299.99812 * 9 7 2 28 28 H 1.08999 * 113.75617 * 108.10589 * 11 10 9 29 29 H 1.09000 * 113.76518 * 336.73747 * 11 10 9 30 30 H 1.09000 * 113.73453 * 269.25609 * 12 11 10 31 31 H 0.96705 * 113.99861 * 90.00222 * 17 16 15 32 32 H 1.08000 * 124.33846 * 180.02562 * 21 20 19 33 33 H 1.09001 * 113.76211 * 23.23450 * 24 10 9 34 34 H 1.09002 * 113.82098 * 251.81007 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5163 -4.9027 0.2394 12 6 2.6928 -5.2411 1.1725 13 8 2.2970 -5.8745 2.3907 14 6 3.1962 -6.7046 2.9730 15 7 4.3856 -6.9059 2.4204 16 6 5.2666 -7.7170 2.9886 17 8 6.4696 -7.8945 2.3902 18 7 5.0182 -8.3563 4.1111 19 6 3.8352 -8.2134 4.7450 20 7 3.3891 -8.7634 5.8758 21 6 2.2062 -8.4567 6.2686 22 16 1.4601 -7.3587 5.1945 23 6 2.8872 -7.3629 4.1668 24 6 2.9015 -3.7217 1.3035 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 1.4578 -5.5406 -0.6426 29 1 0.5618 -4.8001 0.7556 30 1 3.5144 -5.7554 0.6738 31 1 7.1475 -7.2669 2.6761 32 1 1.7438 -8.8402 7.1661 33 1 2.3531 -3.2728 2.1317 34 1 3.9477 -3.4176 1.2703 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227612285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:45 Heat of formation + Delta-G solvation = 67.611692 kcal Electronic energy + Delta-G solvation = -22120.043574 eV Core-core repulsion = 18569.090806 eV Total energy + Delta-G solvation = -3550.952768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.073 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.88742 -40.04475 -39.07101 -37.95797 -36.36782 -33.15628 -32.87016 -30.84913 -29.23152 -26.51961 -25.84424 -25.30081 -24.39484 -23.10789 -21.63366 -20.02789 -19.67156 -19.00881 -18.33663 -17.25559 -16.89038 -16.66264 -16.34398 -15.62778 -15.13407 -14.99479 -14.89574 -14.60837 -14.32143 -13.46299 -13.19106 -12.72443 -12.58057 -12.28074 -12.20972 -12.04856 -11.73044 -11.26044 -11.12877 -10.96730 -10.70653 -10.42109 -10.32229 -10.09531 -10.02903 -9.81459 -9.61987 -9.25728 -8.68611 -8.58829 -8.00286 -6.13343 -4.15790 -0.29114 0.41847 0.67696 1.18475 1.80859 2.33730 2.64847 3.17244 3.25036 3.32749 3.35707 3.37690 4.02190 4.19866 4.34502 4.39753 4.54301 4.68771 4.84441 5.23023 5.28089 5.39645 5.68129 5.86550 5.96374 6.10599 6.19843 6.26984 6.47583 6.86436 6.95038 7.07158 7.13595 7.50634 7.65305 7.74671 7.96728 8.28568 8.91366 9.49274 10.97885 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.003278 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.829295 B = 8538.520885 C = 9211.776325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.163 3.837 10 N -0.469 5.469 11 C 0.005 3.995 12 C 0.043 3.957 13 O -0.279 6.279 14 C 0.469 3.531 15 N -0.574 5.574 16 C 0.562 3.438 17 O -0.450 6.450 18 N -0.521 5.521 19 C 0.376 3.624 20 N -0.468 5.468 21 C 0.095 3.905 22 S 0.209 5.791 23 C -0.345 4.345 24 C 0.014 3.986 25 H 0.262 0.738 26 H 0.037 0.963 27 H 0.002 0.998 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.417 0.583 32 H 0.220 0.780 33 H 0.077 0.923 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -16.397 11.999 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.037 3.963 10 N -0.194 5.194 11 C -0.124 4.124 12 C -0.013 4.013 13 O -0.180 6.180 14 C 0.272 3.728 15 N -0.319 5.319 16 C 0.253 3.747 17 O -0.253 6.253 18 N -0.255 5.255 19 C 0.124 3.876 20 N -0.184 5.184 21 C -0.210 4.210 22 S 0.459 5.541 23 C -0.470 4.470 24 C -0.115 4.115 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.144 0.856 31 H 0.277 0.723 32 H 0.236 0.764 33 H 0.096 0.904 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.883 -16.558 11.038 20.275 hybrid contribution 0.371 1.261 0.745 1.511 sum 4.254 -15.297 11.782 19.772 Atomic orbital electron populations 1.69957 1.06090 1.26896 1.50601 1.24990 0.94891 0.99447 0.95128 0.86417 0.80085 0.83196 0.77621 1.19610 1.20860 1.21003 1.21104 0.93525 0.89811 1.50739 0.91834 1.20248 0.90783 0.88329 0.96941 1.68682 1.21386 1.01925 1.27409 1.24270 0.95914 0.95050 0.97120 1.25347 1.00700 0.93671 0.81589 1.86458 1.37710 1.53718 1.40085 1.18713 0.85343 0.83700 0.85043 1.67869 1.03519 1.23970 1.36551 1.19360 0.87234 0.84950 0.83196 1.84745 1.17267 1.58902 1.64412 1.67439 1.19962 1.27979 1.10083 1.18966 0.88821 0.90012 0.89841 1.65644 1.14035 1.25939 1.12755 1.28784 0.92079 0.96668 1.03440 1.84310 1.13176 1.42114 1.14492 1.24623 1.04336 1.13138 1.04905 1.24239 1.01885 0.91048 0.94299 0.92813 0.94519 0.98038 0.89003 0.90655 0.85601 0.72253 0.76384 0.90446 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.18 8.84 -34.44 -0.30 -14.49 16 8 H 0.06 1.75 7.80 -52.48 -0.41 1.34 16 9 C 0.16 4.13 4.58 -4.98 -0.02 4.11 16 10 N -0.47 -9.85 6.25 -239.77 -1.50 -11.35 16 11 C 0.01 0.09 7.81 -2.76 -0.02 0.07 16 12 C 0.04 0.68 4.34 -25.80 -0.11 0.57 16 13 O -0.28 -4.23 10.16 -18.26 -0.19 -4.42 16 14 C 0.47 6.77 7.54 -16.60 -0.13 6.65 16 15 N -0.57 -8.30 8.81 -14.80 -0.13 -8.43 16 16 C 0.56 7.66 8.66 -91.72 -0.79 6.86 16 17 O -0.45 -4.91 13.64 -18.26 -0.25 -5.16 16 18 N -0.52 -7.60 10.53 -14.75 -0.16 -7.75 16 19 C 0.38 5.16 8.17 -157.64 -1.29 3.87 16 20 N -0.47 -5.50 10.53 -14.55 -0.15 -5.65 16 21 C 0.10 0.70 12.13 51.31 0.62 1.32 16 22 S 0.21 1.84 23.18 -107.50 -2.49 -0.66 16 23 C -0.34 -4.47 6.55 -38.39 -0.25 -4.72 16 24 C 0.01 0.27 7.32 -2.63 -0.02 0.25 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.00 0.05 7.70 -51.93 -0.40 -0.35 16 28 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.29 7.79 -51.93 -0.40 0.89 16 30 H 0.13 1.96 6.96 -51.93 -0.36 1.60 16 31 H 0.42 2.27 9.06 45.56 0.41 2.68 16 32 H 0.22 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.08 1.52 7.79 -51.93 -0.40 1.12 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -34.06 316.54 -9.18 -43.25 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -2.39 Total: -1.49 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -2.41 Total: 5.99 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -1.20 Total: -58.55 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.43 Total: -9.58 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.49 Total: -0.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.06 -9.18 -43.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227612285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.859 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds