Wall clock time and date at job start Tue Mar 31 2020 04:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34974 * 125.97247 * 124.71843 * 10 9 7 12 12 C 1.35241 * 107.85913 * 179.87211 * 11 10 9 13 13 C 1.40408 * 107.86849 * 0.38740 * 12 11 10 14 14 N 1.40153 * 125.97452 * 179.73772 * 13 12 11 15 15 C 1.34781 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21293 * 119.99721 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00304 * 180.02562 * 15 14 13 18 18 H 1.09002 * 110.85891 * 58.79471 * 17 15 14 19 19 C 1.54741 * 110.96895 * 294.99742 * 17 15 14 20 20 C 1.51689 * 102.54438 * 217.66716 * 19 17 15 21 21 C 1.47479 * 125.86329 * 195.38919 * 20 19 17 22 22 O 1.21467 * 119.99846 * 0.02562 * 21 20 19 23 23 O 1.34752 * 120.00214 * 179.97438 * 21 20 19 24 24 N 1.29057 * 108.27740 * 15.39200 * 20 19 17 25 25 O 1.41394 * 112.87307 * 0.31591 * 24 20 19 26 26 N 1.31218 * 108.05473 * 359.75754 * 13 12 11 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 29 29 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 30 30 H 1.07999 * 126.06943 * 359.97438 * 11 10 9 31 31 H 1.08003 * 126.06668 * 180.12707 * 12 11 10 32 32 H 0.97004 * 120.00088 * 179.97438 * 14 13 12 33 33 H 1.08997 * 110.79351 * 335.92723 * 19 17 15 34 34 H 1.08997 * 110.79472 * 99.21338 * 19 17 15 35 35 H 0.96694 * 117.00665 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2455 -4.6195 0.8984 12 6 3.2611 -5.4423 0.5512 13 6 3.8695 -4.9143 -0.5988 14 7 4.9659 -5.4645 -1.2766 15 6 5.5306 -6.6044 -0.8313 16 8 5.0902 -7.1538 0.1563 17 6 6.7099 -7.1957 -1.5598 18 1 7.5384 -6.4884 -1.5956 19 6 6.3094 -7.6523 -2.9830 20 6 7.1111 -8.9282 -3.1575 21 6 7.3671 -9.6199 -4.4346 22 8 6.9188 -9.1694 -5.4698 23 8 8.0991 -10.7511 -4.4533 24 7 7.5307 -9.3045 -1.9965 25 8 7.1183 -8.4401 -0.9563 26 7 3.2324 -3.8153 -0.9278 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8897 30 1 1.5846 -4.7465 1.7431 31 1 3.5549 -6.3433 1.0692 32 1 5.3178 -5.0253 -2.0667 33 1 5.2402 -7.8568 -3.0373 34 1 6.5973 -6.9066 -3.7240 35 1 8.2397 -11.1689 -5.3138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:09 Heat of formation + Delta-G solvation = -4.991694 kcal Electronic energy + Delta-G solvation = -23859.696114 eV Core-core repulsion = 19862.842156 eV Total energy + Delta-G solvation = -3996.853958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60755 -40.86720 -40.34188 -39.00673 -36.87552 -35.13901 -33.87227 -33.77892 -32.01870 -30.68401 -29.51162 -26.63377 -25.97756 -25.22796 -23.15073 -21.91143 -21.10380 -20.61390 -19.84678 -18.85791 -18.03833 -17.95210 -17.26236 -16.67960 -16.55195 -16.38622 -16.00975 -15.47177 -14.83922 -14.75076 -14.21224 -13.93158 -13.83878 -13.78613 -13.42622 -13.22430 -12.73157 -12.56296 -12.33818 -12.25938 -11.92463 -11.82151 -11.62468 -11.23681 -10.88369 -10.68105 -10.57172 -10.20067 -10.16711 -9.79714 -9.08230 -8.63393 -8.35560 -7.67789 -6.63458 -4.38029 0.05139 1.52520 1.91282 2.00595 2.07770 2.67743 2.74191 3.34484 3.35752 3.40868 3.45980 3.53437 3.57122 3.70072 4.02872 4.15081 4.35505 4.37403 4.64230 4.90052 4.94275 5.10107 5.32312 5.56041 5.60665 5.97574 6.19583 6.27944 6.36843 6.49032 6.66619 7.06221 7.10977 7.29478 7.59818 7.72409 7.87201 8.27099 8.40361 8.54948 9.30229 10.74246 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.002487 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.337681 B =11255.843331 C =11687.742344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.314 5.314 11 C 0.054 3.946 12 C -0.285 4.285 13 C 0.255 3.745 14 N -0.621 5.621 15 C 0.525 3.475 16 O -0.486 6.486 17 C 0.031 3.969 18 H 0.131 0.869 19 C -0.124 4.124 20 C 0.057 3.943 21 C 0.566 3.434 22 O -0.481 6.481 23 O -0.494 6.494 24 N -0.198 5.198 25 O -0.140 6.140 26 N -0.296 5.296 27 H 0.267 0.733 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.414 0.586 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.587 -17.659 -8.030 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.648 4.648 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.096 5.096 11 C -0.096 4.096 12 C -0.316 4.316 13 C 0.003 3.997 14 N -0.271 5.271 15 C 0.307 3.693 16 O -0.357 6.357 17 C -0.032 4.032 18 H 0.149 0.851 19 C -0.164 4.164 20 C -0.136 4.136 21 C 0.405 3.595 22 O -0.365 6.365 23 O -0.305 6.305 24 N 0.059 4.941 25 O -0.164 6.164 26 N -0.127 5.127 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.187 0.813 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 14.284 -15.872 -7.337 22.578 hybrid contribution 0.050 -1.667 -0.753 1.829 sum 14.334 -17.538 -8.090 24.052 Atomic orbital electron populations 1.70858 1.06781 1.30449 1.45767 1.25932 0.96307 1.02835 0.93080 0.83417 0.74824 0.74548 0.76853 1.20490 1.21207 1.21121 1.22087 0.95358 0.90385 1.56927 0.91825 1.19802 0.86267 0.82756 0.98130 1.48836 1.23065 1.19570 1.18132 1.22591 1.00382 0.90019 0.96630 1.21534 1.02115 1.06381 1.01541 1.18997 0.91382 0.94495 0.94869 1.42191 1.29918 1.24513 1.30458 1.19694 0.83679 0.80630 0.85293 1.90738 1.60968 1.59518 1.24430 1.23633 0.97854 0.90384 0.91305 0.85150 1.22868 1.03143 0.94039 0.96326 1.24648 0.98634 0.98039 0.92249 1.19067 0.75529 0.78724 0.86154 1.91013 1.47574 1.65145 1.32734 1.84629 1.66201 1.37691 1.41995 1.78672 1.07496 1.11082 0.96831 1.91492 1.81973 1.21155 1.21765 1.77361 1.03283 1.15876 1.16161 0.92256 0.93489 0.94657 0.81289 0.82096 0.75062 0.86032 0.85233 0.71435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 13.65 55.43 0.76 -25.09 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.40 29.90 -169.99 -5.08 19.32 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.61 -16.72 9.24 -34.44 -0.32 -17.03 16 8 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.25 6.10 5.57 -5.19 -0.03 6.07 16 10 N -0.31 -7.06 3.67 -62.56 -0.23 -7.29 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.28 -5.36 9.61 -39.83 -0.38 -5.74 16 13 C 0.26 4.77 8.11 -154.39 -1.25 3.51 16 14 N -0.62 -8.30 5.44 -11.13 -0.06 -8.36 16 15 C 0.53 6.72 7.11 -10.98 -0.08 6.64 16 16 O -0.49 -8.16 13.72 -13.30 -0.18 -8.35 16 17 C 0.03 0.27 4.23 -26.97 -0.11 0.16 16 18 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.12 -0.85 6.43 -26.48 -0.17 -1.02 16 20 C 0.06 0.46 7.30 -79.51 -0.58 -0.12 16 21 C 0.57 4.08 8.34 34.50 0.29 4.36 16 22 O -0.48 -4.38 17.74 -19.24 -0.34 -4.72 16 23 O -0.49 -2.47 13.43 -40.63 -0.55 -3.02 16 24 N -0.20 -2.07 12.51 35.26 0.44 -1.63 16 25 O -0.14 -1.66 11.82 -30.22 -0.36 -2.02 16 26 N -0.30 -6.48 12.42 31.44 0.39 -6.09 16 27 H 0.27 7.46 7.22 -40.82 -0.29 7.17 16 28 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 29 H 0.04 0.90 8.01 -51.93 -0.42 0.49 16 30 H 0.17 2.63 8.06 -52.49 -0.42 2.20 16 31 H 0.16 2.95 5.92 -52.48 -0.31 2.64 16 32 H 0.41 4.09 8.82 -40.82 -0.36 3.73 16 33 H 0.12 0.86 7.90 -51.93 -0.41 0.44 16 34 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.43 -0.08 9.11 45.56 0.42 0.33 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -36.66 325.53 -5.50 -42.15 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.26 Total: 1.97 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.93 Total: -1.79 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 1.30 Total: -48.45 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.43 Total: -18.10 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.32 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.66 -5.50 -42.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.163 kcal (2) G-P(sol) polarization free energy of solvation -36.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds