Wall clock time and date at job start Tue Mar 31 2020 04:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34974 * 125.97247 * 124.71843 * 10 9 7 12 12 C 1.35241 * 107.85913 * 179.87211 * 11 10 9 13 13 C 1.40408 * 107.86849 * 0.38740 * 12 11 10 14 14 N 1.40153 * 125.97452 * 179.73772 * 13 12 11 15 15 C 1.34781 * 120.00099 * 0.02562 * 14 13 12 16 16 O 1.21293 * 119.99721 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00304 * 180.02562 * 15 14 13 18 18 H 1.09002 * 110.85891 * 58.79471 * 17 15 14 19 19 C 1.54741 * 110.96895 * 294.99742 * 17 15 14 20 20 C 1.51689 * 102.54438 * 217.66716 * 19 17 15 21 21 C 1.47479 * 125.86329 * 195.38919 * 20 19 17 22 22 O 1.21467 * 119.99846 * 0.02562 * 21 20 19 23 23 O 1.34752 * 120.00214 * 179.97438 * 21 20 19 24 24 N 1.29057 * 108.27740 * 15.39200 * 20 19 17 25 25 O 1.41394 * 112.87307 * 0.31591 * 24 20 19 26 26 N 1.31218 * 108.05473 * 359.75754 * 13 12 11 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 29 29 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 30 30 H 1.07999 * 126.06943 * 359.97438 * 11 10 9 31 31 H 1.08003 * 126.06668 * 180.12707 * 12 11 10 32 32 H 0.97004 * 120.00088 * 179.97438 * 14 13 12 33 33 H 1.08997 * 110.79351 * 335.92723 * 19 17 15 34 34 H 1.08997 * 110.79472 * 99.21338 * 19 17 15 35 35 H 0.96694 * 117.00665 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2455 -4.6195 0.8984 12 6 3.2611 -5.4423 0.5512 13 6 3.8695 -4.9143 -0.5988 14 7 4.9659 -5.4645 -1.2766 15 6 5.5306 -6.6044 -0.8313 16 8 5.0902 -7.1538 0.1563 17 6 6.7099 -7.1957 -1.5598 18 1 7.5384 -6.4884 -1.5956 19 6 6.3094 -7.6523 -2.9830 20 6 7.1111 -8.9282 -3.1575 21 6 7.3671 -9.6199 -4.4346 22 8 6.9188 -9.1694 -5.4698 23 8 8.0991 -10.7511 -4.4533 24 7 7.5307 -9.3045 -1.9965 25 8 7.1183 -8.4401 -0.9563 26 7 3.2324 -3.8153 -0.9278 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8897 30 1 1.5846 -4.7465 1.7431 31 1 3.5549 -6.3433 1.0692 32 1 5.3178 -5.0253 -2.0667 33 1 5.2402 -7.8568 -3.0373 34 1 6.5973 -6.9066 -3.7240 35 1 8.2397 -11.1689 -5.3138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480402.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:08 Heat of formation + Delta-G solvation = -32.564455 kcal Electronic energy + Delta-G solvation = -23860.891759 eV Core-core repulsion = 19862.842156 eV Total energy + Delta-G solvation = -3998.049602 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.54749 -42.01337 -41.13041 -40.06799 -37.37537 -36.53898 -35.64331 -34.55725 -33.20619 -31.99842 -31.05677 -28.31819 -26.67267 -26.20689 -24.94276 -23.09932 -22.18663 -21.59403 -21.13930 -19.43984 -19.25563 -18.93284 -18.68314 -18.08034 -17.19776 -17.14650 -16.93798 -16.82563 -16.09233 -15.90126 -15.64461 -15.39984 -14.99580 -14.57111 -14.48117 -14.31434 -14.00516 -13.96750 -13.72308 -13.30077 -13.22749 -12.79021 -12.61316 -12.47353 -12.22050 -12.12129 -11.95261 -11.75734 -11.41304 -11.02349 -10.85051 -10.69073 -9.89745 -9.28009 -8.77954 -6.55843 -0.57091 0.68348 0.80484 1.18739 1.27660 1.43324 1.52391 1.58338 1.76078 1.80716 2.04782 2.27289 2.49522 2.78756 3.00381 3.01625 3.25187 3.53698 3.72312 3.84685 4.10756 4.14161 4.34955 4.45822 4.53987 4.63931 4.76708 4.78455 5.00692 5.19581 5.54046 5.60316 5.74663 5.89554 6.07365 6.24770 6.40260 6.70155 6.75705 6.93462 7.19860 8.58913 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.002487 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.337681 B =11255.843331 C =11687.742344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.119 2.881 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.621 4.621 8 H 0.047 0.953 9 C 0.259 3.741 10 N -0.342 5.342 11 C 0.057 3.943 12 C -0.292 4.292 13 C 0.267 3.733 14 N -0.610 5.610 15 C 0.529 3.471 16 O -0.528 6.528 17 C 0.039 3.961 18 H 0.170 0.830 19 C -0.123 4.123 20 C 0.072 3.928 21 C 0.576 3.424 22 O -0.500 6.500 23 O -0.491 6.491 24 N -0.222 5.222 25 O -0.174 6.174 26 N -0.336 5.336 27 H 0.261 0.739 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.201 0.799 31 H 0.168 0.832 32 H 0.431 0.569 33 H 0.121 0.879 34 H 0.167 0.833 35 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.309 -18.032 -8.992 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.940 3.060 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.659 4.659 8 H 0.065 0.935 9 C 0.140 3.860 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.323 4.323 13 C 0.013 3.987 14 N -0.261 5.261 15 C 0.314 3.686 16 O -0.401 6.401 17 C -0.022 4.022 18 H 0.187 0.813 19 C -0.161 4.161 20 C -0.121 4.121 21 C 0.415 3.585 22 O -0.385 6.385 23 O -0.306 6.306 24 N 0.033 4.967 25 O -0.196 6.196 26 N -0.167 5.167 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.218 0.782 31 H 0.185 0.815 32 H 0.271 0.729 33 H 0.139 0.861 34 H 0.184 0.816 35 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 16.040 -16.288 -8.318 24.326 hybrid contribution -0.417 -1.764 -0.510 1.883 sum 15.623 -18.052 -8.828 25.453 Atomic orbital electron populations 1.70952 1.07501 1.30197 1.47325 1.27267 0.96426 1.06102 0.92103 0.82883 0.74144 0.71099 0.77855 1.20189 1.19692 1.19858 1.22280 0.94738 0.92023 1.56844 0.93461 1.19443 0.86402 0.82746 0.97455 1.48602 1.23873 1.20178 1.19712 1.23181 1.00605 0.88780 0.96592 1.21728 1.02182 1.06530 1.01841 1.19329 0.91634 0.93233 0.94541 1.42263 1.28470 1.24706 1.30696 1.20460 0.83867 0.79605 0.84689 1.90714 1.62353 1.60531 1.26480 1.23755 0.96854 0.90299 0.91322 0.81315 1.22987 1.02943 0.94406 0.95813 1.24949 0.97160 0.97969 0.92037 1.18869 0.75301 0.78943 0.85343 1.91019 1.48495 1.65827 1.33141 1.84599 1.65240 1.36782 1.43985 1.78712 1.09350 1.11355 0.97250 1.91472 1.82479 1.22363 1.23276 1.77278 1.04339 1.17780 1.17265 0.92957 0.92873 0.96382 0.78224 0.81500 0.72939 0.86114 0.81554 0.68825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 13.65 21.45 0.29 -52.92 16 2 C -0.02 -1.06 5.46 84.65 0.46 -0.59 16 3 Si 1.12 48.60 29.90 68.60 2.05 50.65 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.62 -34.44 9.24 25.60 0.24 -34.20 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.26 12.95 5.57 85.64 0.48 13.42 16 10 N -0.34 -15.46 3.67 -351.83 -1.29 -16.75 16 11 C 0.06 2.14 11.44 83.52 0.96 3.10 16 12 C -0.29 -10.83 9.61 22.11 0.21 -10.62 16 13 C 0.27 9.80 8.11 133.33 1.08 10.88 16 14 N -0.61 -15.31 5.44 -307.51 -1.67 -16.99 16 15 C 0.53 12.74 7.11 87.66 0.62 13.36 16 16 O -0.53 -17.44 13.72 14.95 0.21 -17.23 16 17 C 0.04 0.60 4.23 30.44 0.13 0.73 16 18 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 19 C -0.12 -1.31 6.43 30.76 0.20 -1.12 16 20 C 0.07 1.01 7.30 45.72 0.33 1.34 16 21 C 0.58 6.92 8.34 70.26 0.59 7.51 16 22 O -0.50 -7.88 17.74 19.94 0.35 -7.53 16 23 O -0.49 -3.75 13.43 -56.62 -0.76 -4.51 16 24 N -0.22 -4.30 12.51 -42.36 -0.53 -4.83 16 25 O -0.17 -3.93 11.82 -20.30 -0.24 -4.17 16 26 N -0.34 -14.73 12.42 -54.45 -0.68 -15.40 16 27 H 0.26 14.85 7.22 -92.71 -0.67 14.18 16 28 H 0.05 2.56 7.94 -2.39 -0.02 2.54 16 29 H 0.02 0.96 8.01 -2.38 -0.02 0.94 16 30 H 0.20 5.97 8.06 -2.91 -0.02 5.95 16 31 H 0.17 6.04 5.92 -2.91 -0.02 6.02 16 32 H 0.43 7.54 8.82 -92.71 -0.82 6.72 16 33 H 0.12 1.41 7.90 -2.39 -0.02 1.39 16 34 H 0.17 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.45 -1.33 9.11 -74.06 -0.67 -2.00 16 Total: -1.00 -80.42 325.53 2.82 -77.59 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -0.20 Total: 8.27 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 5.29 Total: 3.81 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -3.88 Total: -106.89 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.44 Total: -33.44 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.05 Total: 50.65 kcal Total: -80.42 2.82 -77.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480402.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.029 kcal (2) G-P(sol) polarization free energy of solvation -80.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds