Wall clock time and date at job start Tue Mar 31 2020 04:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00207 * 2 1 4 4 H 1.48503 * 109.47200 * 240.00092 * 3 2 1 5 5 H 1.48501 * 109.46967 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47425 * 119.99967 * 3 2 1 7 7 C 1.38956 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99632 * 180.02562 * 7 2 1 9 9 N 1.37096 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99696 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00163 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99545 * 180.02562 * 10 9 7 13 13 N 1.46508 * 109.46874 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00292 * 180.02562 * 13 12 10 15 15 O 1.21710 * 119.99587 * 359.97438 * 14 13 12 16 16 C 1.46395 * 120.00118 * 180.02562 * 14 13 12 17 17 C 1.35230 * 119.99883 * 179.97438 * 16 14 13 18 18 C 1.46358 * 119.99929 * 179.97438 * 17 16 14 19 19 C 1.38108 * 125.81340 * 180.02562 * 18 17 16 20 20 C 1.39764 * 106.84865 * 179.70935 * 19 18 17 21 21 C 1.37818 * 106.88695 * 0.40810 * 20 19 18 22 22 C 1.46832 * 125.77630 * 179.84259 * 21 20 19 23 23 O 1.21579 * 120.00105 * 359.72278 * 22 21 20 24 24 O 1.34868 * 119.99901 * 179.72066 * 22 21 20 25 25 O 1.34552 * 125.81504 * 359.97438 * 18 17 16 26 26 H 0.96999 * 120.00030 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00192 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47657 * 60.00310 * 12 10 9 29 29 H 1.09002 * 109.47291 * 299.99265 * 12 10 9 30 30 H 0.97001 * 119.99894 * 359.97438 * 13 12 10 31 31 H 1.08001 * 119.99984 * 359.97438 * 16 14 13 32 32 H 1.08001 * 120.00127 * 0.02562 * 17 16 14 33 33 H 1.07997 * 126.57302 * 359.93284 * 19 18 17 34 34 H 1.07994 * 126.55927 * 180.27560 * 20 19 18 35 35 H 0.96700 * 117.00183 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 7 2.1958 -5.9765 -0.0016 14 6 1.7465 -7.2472 -0.0027 15 8 0.5499 -7.4695 -0.0028 16 6 2.6979 -8.3599 -0.0026 17 6 2.2471 -9.6348 -0.0032 18 6 3.1982 -10.7473 -0.0037 19 6 2.8721 -12.0893 -0.0048 20 6 4.0763 -12.7988 -0.0117 21 6 5.0906 -11.8658 -0.0052 22 6 6.5289 -12.1615 -0.0057 23 8 6.9123 -13.3153 -0.0072 24 8 7.4246 -11.1533 -0.0045 25 8 4.5392 -10.6367 -0.0041 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6174 -4.9205 -0.8913 29 1 0.6168 -4.9209 0.8887 30 1 3.1494 -5.7992 -0.0019 31 1 3.7597 -8.1625 -0.0021 32 1 1.1853 -9.8322 -0.0041 33 1 1.8774 -12.5098 -0.0044 34 1 4.1901 -13.8727 -0.0185 35 1 8.3603 -11.3973 -0.0053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:59 Heat of formation + Delta-G solvation = -131.673520 kcal Electronic energy + Delta-G solvation = -22888.261409 eV Core-core repulsion = 18853.621364 eV Total energy + Delta-G solvation = -4034.640045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.09128 -40.37142 -39.70478 -38.19422 -36.66746 -34.62790 -34.22638 -33.74184 -33.57389 -31.42986 -30.11019 -27.98880 -25.61525 -24.47604 -22.84636 -22.05911 -21.00241 -19.94105 -19.46079 -18.90232 -18.13748 -18.09663 -17.45317 -17.03969 -16.26967 -15.70640 -15.66445 -15.32665 -15.12420 -14.62365 -14.22887 -14.17580 -13.88974 -13.66826 -13.61916 -13.56966 -12.91109 -12.57877 -12.24522 -12.13754 -12.05418 -11.66151 -11.47182 -11.13457 -10.97488 -10.53215 -10.46716 -10.35008 -10.03160 -9.66285 -8.97202 -8.68754 -8.57495 -8.14107 -6.54819 -3.97034 -0.14407 0.96540 1.84588 2.12612 2.38421 2.69489 3.11318 3.17396 3.20147 3.26470 3.27234 3.69681 4.06358 4.17131 4.28753 4.62500 4.79431 4.81798 4.89682 5.01391 5.13426 5.14035 5.35974 5.56622 5.75173 5.84350 5.84866 5.88661 5.93534 6.01157 6.38307 6.54049 7.30918 7.42692 7.65992 7.87640 8.26450 8.41157 9.00841 9.34882 9.82593 10.61844 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.025856 B = 0.002046 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.674582 B =13681.319609 C =14748.848006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.597 6.597 12 C 0.108 3.892 13 N -0.696 5.696 14 C 0.540 3.460 15 O -0.548 6.548 16 C -0.156 4.156 17 C -0.027 4.027 18 C 0.059 3.941 19 C -0.193 4.193 20 C -0.100 4.100 21 C -0.068 4.068 22 C 0.573 3.427 23 O -0.496 6.496 24 O -0.502 6.502 25 O -0.139 6.139 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.414 0.586 31 H 0.137 0.863 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 -22.666 -0.018 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.348 5.348 14 C 0.328 3.672 15 O -0.429 6.429 16 C -0.177 4.177 17 C -0.046 4.046 18 C 0.006 3.994 19 C -0.211 4.211 20 C -0.120 4.120 21 C -0.119 4.119 22 C 0.417 3.583 23 O -0.385 6.385 24 O -0.314 6.314 25 O -0.034 6.034 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.252 0.748 31 H 0.155 0.845 32 H 0.186 0.814 33 H 0.187 0.813 34 H 0.187 0.813 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.973 -22.497 -0.017 23.277 hybrid contribution 0.831 0.737 -0.002 1.111 sum 6.804 -21.761 -0.019 22.800 Atomic orbital electron populations 1.69601 1.06017 1.28701 1.49067 1.25338 0.95683 0.99979 0.96696 0.85860 0.78778 0.80075 0.79185 1.19751 1.20838 1.19748 1.19685 0.93455 0.81979 1.48459 0.87691 1.41788 1.09498 1.04468 1.62450 1.19714 0.88298 0.84977 0.85846 1.90503 1.13680 1.86779 1.57449 1.21006 0.91816 0.85674 1.03496 1.45629 1.11912 1.04588 1.72716 1.18112 0.88362 0.83161 0.77606 1.90822 1.16202 1.85085 1.50749 1.23317 1.00789 0.92925 1.00714 1.21569 0.97519 0.88645 0.96888 1.21482 0.80104 0.95397 1.02399 1.22254 1.00192 0.91119 1.07582 1.22141 0.90167 1.00784 0.98881 1.21001 0.90908 0.82962 1.16987 1.18885 0.84152 0.82657 0.72576 1.91004 1.79254 1.21310 1.46975 1.84677 1.21994 1.39409 1.85294 1.84165 1.19692 1.30078 1.69460 0.91487 0.76999 0.89550 0.89541 0.74774 0.84480 0.81364 0.81264 0.81323 0.71939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.54 13.05 55.50 0.72 -22.81 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.30 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.31 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.32 5.29 -10.96 -0.06 -13.37 16 10 C 0.43 9.53 7.85 -10.99 -0.09 9.44 16 11 O -0.60 -14.99 15.24 5.55 0.08 -14.90 16 12 C 0.11 1.90 6.15 -5.19 -0.03 1.87 16 13 N -0.70 -11.01 5.52 -62.89 -0.35 -11.36 16 14 C 0.54 7.90 7.74 -12.98 -0.10 7.80 16 15 O -0.55 -9.42 16.24 5.18 0.08 -9.33 16 16 C -0.16 -1.74 9.67 -37.37 -0.36 -2.10 16 17 C -0.03 -0.25 9.64 -37.39 -0.36 -0.61 16 18 C 0.06 0.54 7.02 -36.36 -0.26 0.29 16 19 C -0.19 -1.41 10.88 -39.06 -0.42 -1.84 16 20 C -0.10 -0.79 10.64 -39.16 -0.42 -1.20 16 21 C -0.07 -0.65 7.21 -36.26 -0.26 -0.91 16 22 C 0.57 5.32 8.32 34.21 0.28 5.60 16 23 O -0.50 -5.44 17.65 -19.32 -0.34 -5.78 16 24 O -0.50 -3.63 13.44 -42.45 -0.57 -4.20 16 25 O -0.14 -1.46 10.29 3.59 0.04 -1.42 16 26 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 27 H 0.40 9.23 7.90 -40.82 -0.32 8.91 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.41 6.43 7.42 -40.82 -0.30 6.13 16 31 H 0.14 1.35 7.78 -52.49 -0.41 0.94 16 32 H 0.17 1.44 7.53 -52.49 -0.39 1.04 16 33 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.42 0.87 9.11 45.56 0.42 1.29 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -33.68 335.50 -4.82 -38.50 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -2.21 Total: 13.79 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -2.26 Total: 10.56 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.32 Total: -47.54 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.71 Total: -35.64 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.68 -4.82 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.169 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds