Wall clock time and date at job start Tue Mar 31 2020 04:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47435 * 269.99528 * 3 2 1 5 5 H 1.48500 * 109.47466 * 29.99966 * 3 2 1 6 6 H 1.48505 * 109.47083 * 149.99738 * 3 2 1 7 7 C 1.37879 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00133 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99761 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47006 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99865 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00034 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00051 * 179.97438 * 11 10 9 14 14 O 1.45193 * 109.47221 * 179.97438 * 13 11 10 15 15 C 1.34674 * 117.00168 * 180.02562 * 14 13 11 16 16 O 1.21412 * 119.99536 * 359.97438 * 15 14 13 17 17 C 1.48147 * 120.00000 * 180.02562 * 15 14 13 18 18 C 1.39482 * 120.97683 * 353.87754 * 17 15 14 19 19 C 1.38425 * 119.12890 * 180.25722 * 18 17 15 20 20 N 1.31824 * 121.17957 * 359.74503 * 19 18 17 21 21 C 1.31695 * 122.17776 * 359.97438 * 20 19 18 22 22 C 1.39414 * 120.70684 * 0.02562 * 21 20 19 23 23 C 1.47822 * 120.62022 * 179.97438 * 22 21 20 24 24 O 1.21453 * 119.99807 * 127.13138 * 23 22 21 25 25 O 1.34699 * 119.99939 * 307.12984 * 23 22 21 26 26 H 0.97008 * 119.99637 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47291 * 59.99923 * 9 7 2 28 28 H 1.09001 * 109.47419 * 299.99908 * 9 7 2 29 29 H 0.96997 * 120.00035 * 359.97438 * 10 9 7 30 30 H 1.09004 * 109.47134 * 59.99567 * 13 11 10 31 31 H 1.08992 * 109.47335 * 300.00058 * 13 11 10 32 32 H 1.07996 * 120.43686 * 359.97438 * 18 17 15 33 33 H 1.08000 * 119.41271 * 179.76720 * 19 18 17 34 34 H 1.07997 * 119.64671 * 179.97438 * 21 20 19 35 35 H 0.96699 * 116.99849 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 7 3.9997 -2.5755 0.0010 11 6 5.3248 -2.8218 0.0020 12 8 6.1129 -1.9000 0.0025 13 6 5.8271 -4.2426 0.0024 14 8 7.2790 -4.2427 0.0029 15 6 7.8904 -5.4426 0.0028 16 8 7.2290 -6.4608 0.0028 17 6 9.3698 -5.5202 0.0038 18 6 10.1491 -4.3703 -0.1227 19 6 11.5284 -4.4876 -0.1224 20 7 12.1133 -5.6626 -0.0001 21 6 11.4257 -6.7785 0.1279 22 6 10.0317 -6.7585 0.1383 23 6 9.2618 -8.0122 0.2814 24 8 8.4111 -8.1074 1.1430 25 8 9.5037 -9.0490 -0.5437 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6806 -0.8888 29 1 3.3693 -3.3127 0.0010 30 1 5.4643 -4.7565 -0.8878 31 1 5.4631 -4.7564 0.8921 32 1 9.6825 -3.4016 -0.2242 33 1 12.1361 -3.6006 -0.2239 34 1 11.9472 -7.7192 0.2249 35 1 8.9747 -9.8477 -0.4118 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:52 Heat of formation + Delta-G solvation = -188.544083 kcal Electronic energy + Delta-G solvation = -23973.387516 eV Core-core repulsion = 19936.281379 eV Total energy + Delta-G solvation = -4037.106138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44034 -41.35398 -40.52940 -40.33528 -37.80869 -37.06717 -36.22645 -34.48443 -34.26332 -32.91469 -31.19012 -29.06399 -26.93937 -25.75205 -24.22667 -23.27626 -22.23987 -21.77523 -19.89670 -19.37712 -19.17478 -18.62150 -18.20869 -17.99971 -17.63437 -17.56534 -16.89304 -16.39212 -16.31797 -16.17331 -15.71375 -15.58864 -15.14728 -14.86097 -14.61176 -14.48949 -14.37725 -13.98555 -13.81983 -13.36225 -13.09493 -12.71133 -12.68382 -12.13039 -12.08550 -11.97764 -11.93358 -11.68118 -11.36911 -11.03969 -10.92936 -10.83107 -10.48682 -10.06667 -8.40525 -6.48548 -0.99454 -0.35288 0.88059 1.12223 1.18902 1.34060 1.36864 1.46099 1.49035 1.83388 2.27663 2.32031 2.49054 2.94962 3.17861 3.27003 3.40493 3.59275 3.59955 3.82040 3.95324 3.96746 4.26846 4.39029 4.56535 4.71998 4.74247 4.92307 4.99812 5.22416 5.27157 5.36772 5.48152 6.03643 6.25239 6.51104 6.56015 6.67899 6.85826 7.08755 7.23914 8.74105 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.026844 B = 0.002641 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.801821 B =10599.751364 C =11538.197642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.233 3.767 10 N -0.697 5.697 11 C 0.508 3.492 12 O -0.572 6.572 13 C 0.059 3.941 14 O -0.330 6.330 15 C 0.499 3.501 16 O -0.497 6.497 17 C -0.048 4.048 18 C -0.112 4.112 19 C 0.137 3.863 20 N -0.471 5.471 21 C 0.154 3.846 22 C -0.129 4.129 23 C 0.535 3.465 24 O -0.514 6.514 25 O -0.499 6.499 26 H 0.273 0.727 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.413 0.587 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.173 0.827 33 H 0.213 0.787 34 H 0.204 0.796 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.409 -15.251 -1.699 29.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.110 3.890 10 N -0.348 5.348 11 C 0.293 3.707 12 O -0.452 6.452 13 C -0.018 4.018 14 O -0.245 6.245 15 C 0.343 3.657 16 O -0.384 6.384 17 C -0.057 4.057 18 C -0.132 4.132 19 C -0.020 4.020 20 N -0.180 5.180 21 C -0.002 4.002 22 C -0.132 4.132 23 C 0.376 3.624 24 O -0.402 6.402 25 O -0.313 6.313 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.249 0.751 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.190 0.810 33 H 0.229 0.771 34 H 0.221 0.779 35 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 26.427 -14.504 -1.524 30.184 hybrid contribution -2.274 -0.110 0.174 2.283 sum 24.153 -14.614 -1.350 28.262 Atomic orbital electron populations 1.69988 1.07808 1.28690 1.50528 1.25626 0.95551 1.02822 0.93513 0.85834 0.79324 0.79079 0.79536 1.18858 1.20046 1.18062 1.21277 0.89890 0.94668 1.52897 0.92208 1.19189 0.93374 0.80153 0.96320 1.45863 1.05811 1.10474 1.72654 1.20389 0.82808 0.90640 0.76817 1.90675 1.56039 1.47255 1.51263 1.22809 0.77077 0.94570 1.07335 1.86524 1.22504 1.31775 1.83685 1.21397 0.89527 0.81412 0.73404 1.90930 1.66828 1.36086 1.44594 1.19424 0.89049 0.94665 1.02566 1.22846 0.95678 0.98913 0.95727 1.23794 0.91615 0.96838 0.89797 1.67806 1.40733 0.99063 1.10375 1.23442 0.87197 0.98968 0.90584 1.20172 0.96222 0.90068 1.06743 1.20462 0.79654 0.83780 0.78493 1.90951 1.31611 1.82498 1.35156 1.84525 1.64158 1.26233 1.56377 0.91819 0.96330 0.96313 0.75124 0.85572 0.86082 0.80953 0.77071 0.77936 0.70236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 2 C 0.03 1.40 5.47 84.66 0.46 1.86 16 3 Si 0.94 42.83 27.47 68.60 1.88 44.72 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.26 -11.46 6.54 99.48 0.65 -10.81 16 7 C -0.55 -29.54 9.83 25.60 0.25 -29.28 16 8 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 9 C 0.23 10.94 4.50 85.63 0.38 11.32 16 10 N -0.70 -26.38 5.55 -466.78 -2.59 -28.97 16 11 C 0.51 18.08 7.91 87.66 0.69 18.77 16 12 O -0.57 -24.67 16.50 15.78 0.26 -24.41 16 13 C 0.06 1.58 5.95 71.23 0.42 2.00 16 14 O -0.33 -9.23 9.13 -49.45 -0.45 -9.68 16 15 C 0.50 13.29 7.82 70.45 0.55 13.84 16 16 O -0.50 -15.24 12.93 27.71 0.36 -14.88 16 17 C -0.05 -1.00 5.94 -19.66 -0.12 -1.12 16 18 C -0.11 -1.68 9.70 22.61 0.22 -1.46 16 19 C 0.14 1.47 11.17 84.74 0.95 2.41 16 20 N -0.47 -6.26 10.32 -194.85 -2.01 -8.27 16 21 C 0.15 2.02 10.94 85.00 0.93 2.95 16 22 C -0.13 -2.40 5.80 -19.77 -0.11 -2.51 16 23 C 0.53 11.17 6.59 70.36 0.46 11.63 16 24 O -0.51 -14.83 15.49 27.58 0.43 -14.40 16 25 O -0.50 -6.65 13.43 -56.08 -0.75 -7.41 16 26 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 27 H 0.02 0.92 7.20 -2.38 -0.02 0.90 16 28 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 29 H 0.41 13.46 8.32 -92.71 -0.77 12.69 16 30 H 0.13 2.82 8.14 -2.38 -0.02 2.80 16 31 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.17 2.40 7.72 -2.91 -0.02 2.38 16 33 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 34 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.44 2.23 9.11 -74.06 -0.67 1.55 16 Total: -1.00 -79.29 325.61 2.20 -77.09 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -0.32 Total: 10.45 kcal Atomic # 6 Polarization: 25.32 SS G_CDS: 5.10 Total: 30.41 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -4.30 Total: -91.89 kcal Atomic # 8 Polarization: -70.62 SS G_CDS: -0.16 Total: -70.78 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.72 kcal Total: -79.29 2.20 -77.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.455 kcal (2) G-P(sol) polarization free energy of solvation -79.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds