Wall clock time and date at job start Tue Mar 31 2020 03:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38133 * 120.01527 * 2 1 4 4 C 1.38231 * 120.09979 * 180.25407 * 3 2 1 5 5 C 1.38540 * 120.13002 * 359.74746 * 4 3 2 6 6 F 1.35101 * 119.99127 * 179.97438 * 5 4 3 7 7 C 1.38295 * 120.02170 * 359.97438 * 5 4 3 8 8 C 1.38909 * 119.90486 * 0.02562 * 7 5 4 9 9 N 1.39714 * 120.06660 * 179.97438 * 8 7 5 10 10 C 1.34779 * 120.00278 * 335.29637 * 9 8 7 11 11 O 1.21377 * 119.99500 * 354.45286 * 10 9 8 12 12 C 1.49350 * 120.00142 * 174.44149 * 10 9 8 13 13 O 1.21354 * 120.00498 * 5.93824 * 12 10 9 14 14 N 1.34782 * 119.99733 * 185.93271 * 12 10 9 15 15 C 1.46498 * 120.00435 * 356.44450 * 14 12 10 16 16 C 1.46508 * 119.99502 * 176.44460 * 14 12 10 17 17 H 1.08993 * 109.47224 * 0.02562 * 16 14 12 18 18 C 1.53007 * 109.46825 * 239.99843 * 16 14 12 19 19 C 1.50700 * 109.46606 * 120.00374 * 16 14 12 20 20 H 1.07994 * 120.00612 * 359.97438 * 19 16 14 21 21 C 1.37879 * 119.99461 * 179.97438 * 19 16 14 22 22 N 1.31515 * 119.99954 * 179.97438 * 21 19 16 23 23 Si 1.86799 * 120.00324 * 0.02562 * 21 19 16 24 24 H 1.48503 * 109.46822 * 269.99959 * 23 21 19 25 25 H 1.48499 * 109.47379 * 29.99338 * 23 21 19 26 26 H 1.48493 * 109.47512 * 149.99730 * 23 21 19 27 27 H 1.09002 * 109.46471 * 270.25179 * 1 2 3 28 28 H 1.09000 * 109.46972 * 30.25295 * 1 2 3 29 29 H 1.09004 * 109.47183 * 150.25419 * 1 2 3 30 30 H 1.07997 * 119.94507 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.93337 * 179.72468 * 4 3 2 32 32 H 1.08006 * 120.04706 * 180.02562 * 7 5 4 33 33 H 0.97009 * 120.00257 * 155.29858 * 9 8 7 34 34 H 1.09004 * 109.46857 * 275.96848 * 15 14 12 35 35 H 1.09003 * 109.46832 * 35.96655 * 15 14 12 36 36 H 1.08994 * 109.47063 * 155.96405 * 15 14 12 37 37 H 1.08993 * 109.46747 * 180.02562 * 18 16 14 38 38 H 1.09000 * 109.46814 * 300.00430 * 18 16 14 39 39 H 1.08994 * 109.46960 * 60.00273 * 18 16 14 40 40 H 0.97000 * 120.00498 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1961 0.0000 4 6 3.5803 1.1981 -0.0053 5 6 4.2775 0.0009 -0.0054 6 9 5.6285 0.0062 -0.0111 7 6 3.5910 -1.1996 0.0004 8 6 2.2019 -1.2030 0.0058 9 7 1.5049 -2.4139 0.0111 10 6 2.0859 -3.5280 -0.4765 11 8 3.1733 -3.4609 -1.0114 12 6 1.3916 -4.8450 -0.3584 13 8 0.2605 -4.8978 0.0780 14 7 2.0214 -5.9751 -0.7366 15 6 3.3564 -5.9043 -1.3358 16 6 1.3708 -7.2742 -0.5485 17 1 0.3915 -7.1276 -0.0932 18 6 2.2326 -8.1487 0.3645 19 6 1.2067 -7.9519 -1.8845 20 1 1.5521 -7.4636 -2.7838 21 6 0.6157 -9.1953 -1.9588 22 7 0.4720 -9.7866 -3.1247 23 14 0.0177 -10.0397 -0.4035 24 1 1.1126 -10.8683 0.1621 25 1 -0.3912 -9.0148 0.5903 26 1 -1.1435 -10.9071 -0.7263 27 1 -0.3632 0.0045 1.0277 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3634 -0.8923 -0.5099 30 1 1.6574 2.1310 -0.0004 31 1 4.1178 2.1349 -0.0098 32 1 4.1341 -2.1331 0.0008 33 1 0.6028 -2.4527 0.3657 34 1 3.2653 -5.7040 -2.4034 35 1 3.9248 -5.1033 -0.8631 36 1 3.8723 -6.8528 -1.1867 37 1 1.7488 -9.1154 0.5040 38 1 3.2118 -8.2952 -0.0914 39 1 2.3514 -7.6585 1.3307 40 1 0.0559 -10.6612 -3.1771 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132140575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:42 Heat of formation + Delta-G solvation = -62.068518 kcal Electronic energy + Delta-G solvation = -25300.341137 eV Core-core repulsion = 21416.925276 eV Total energy + Delta-G solvation = -3883.415862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.00671 -41.19394 -39.47487 -38.06929 -36.13309 -34.87043 -32.80692 -32.55540 -30.57451 -30.25097 -26.96736 -26.46184 -25.42143 -24.92770 -23.18550 -21.72003 -20.92584 -19.47202 -18.31728 -17.55035 -16.91671 -16.58708 -16.34573 -15.90417 -15.83305 -15.65091 -15.30763 -15.10345 -14.65910 -14.16819 -13.96076 -13.70940 -13.58379 -13.31923 -13.03547 -12.51409 -12.42970 -12.32756 -12.20917 -12.18596 -11.94251 -11.88172 -11.49845 -11.27828 -10.80279 -10.78948 -10.65595 -10.22895 -9.71922 -9.45459 -9.06502 -8.85873 -8.72012 -8.34726 -7.96466 -6.21929 -4.24346 0.75959 0.96404 1.70841 2.40893 3.17409 3.24982 3.30809 3.31707 3.52009 3.71539 4.12898 4.27180 4.43357 4.55033 4.59731 4.77618 4.93721 5.09700 5.14092 5.32429 5.37375 5.60450 5.73834 5.81140 5.87739 5.93335 6.03354 6.08715 6.09573 6.18394 6.20699 6.32719 6.48540 6.69944 6.71755 6.80245 7.00014 7.07463 7.47066 7.63873 7.92165 8.26033 8.44595 8.79678 9.36666 10.90543 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025854 B = 0.003325 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.734944 B = 8419.547110 C = 8988.969298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.125 4.125 3 C -0.070 4.070 4 C -0.172 4.172 5 C 0.115 3.885 6 F -0.137 7.137 7 C -0.167 4.167 8 C 0.182 3.818 9 N -0.646 5.646 10 C 0.509 3.491 11 O -0.490 6.490 12 C 0.496 3.504 13 O -0.534 6.534 14 N -0.544 5.544 15 C 0.071 3.929 16 C 0.226 3.774 17 H 0.066 0.934 18 C -0.163 4.163 19 C -0.532 4.532 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.891 5.891 23 Si 0.883 3.117 24 H -0.276 1.276 25 H -0.263 1.263 26 H -0.292 1.292 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.159 0.841 33 H 0.426 0.574 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 20.147 8.413 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.128 4.128 3 C -0.089 4.089 4 C -0.192 4.192 5 C 0.095 3.905 6 F -0.116 7.116 7 C -0.188 4.188 8 C 0.086 3.914 9 N -0.292 5.292 10 C 0.293 3.707 11 O -0.363 6.363 12 C 0.277 3.723 13 O -0.413 6.413 14 N -0.273 5.273 15 C -0.072 4.072 16 C 0.125 3.875 17 H 0.084 0.916 18 C -0.221 4.221 19 C -0.570 4.570 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.528 5.528 23 Si 0.713 3.287 24 H -0.202 1.202 25 H -0.188 1.188 26 H -0.220 1.220 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.177 0.823 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.014 19.839 8.140 21.817 hybrid contribution -0.381 -0.676 0.708 1.051 sum 3.633 19.163 8.848 21.418 Atomic orbital electron populations 1.20773 0.90222 1.03622 1.02820 1.19719 0.96690 0.91361 1.05059 1.20652 0.92898 0.97279 0.98080 1.21092 0.94908 0.97076 1.06094 1.17438 0.76944 0.93993 1.02080 1.91507 1.28871 1.97389 1.93818 1.21339 0.93310 0.99121 1.04988 1.17301 0.90530 0.84856 0.98696 1.43312 1.19633 1.06086 1.60207 1.20908 0.85893 0.85928 0.77944 1.90649 1.20288 1.85512 1.39870 1.19522 0.86622 0.84604 0.81565 1.90726 1.17463 1.86175 1.46961 1.47889 1.17996 1.06247 1.55214 1.22218 0.82876 1.03171 0.98890 1.19525 0.93019 0.77893 0.97022 0.91594 1.22483 1.01559 0.99796 0.98251 1.21089 1.41121 1.02844 0.91927 0.90093 1.24855 0.94811 0.96762 0.96150 1.69864 1.43242 1.15830 1.23827 0.86920 0.78157 0.79925 0.83732 1.20242 1.18786 1.21964 0.90664 0.90669 0.91236 0.84561 0.84715 0.82327 0.73514 0.92294 0.89302 0.90865 0.92719 0.92112 0.94582 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.45 36.01 0.34 -0.52 16 2 C -0.13 -1.21 5.90 -104.40 -0.62 -1.82 16 3 C -0.07 -0.58 9.69 -39.62 -0.38 -0.97 16 4 C -0.17 -1.60 10.02 -39.47 -0.40 -1.99 16 5 C 0.12 1.36 7.30 -39.45 -0.29 1.07 16 6 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 7 C -0.17 -2.17 8.69 -39.31 -0.34 -2.51 16 8 C 0.18 2.21 6.41 -83.76 -0.54 1.67 16 9 N -0.65 -8.40 4.96 -10.30 -0.05 -8.45 16 10 C 0.51 8.16 7.58 -11.63 -0.09 8.07 16 11 O -0.49 -8.18 10.29 5.47 0.06 -8.12 16 12 C 0.50 9.56 7.73 -11.63 -0.09 9.47 16 13 O -0.53 -11.25 15.82 5.49 0.09 -11.16 16 14 N -0.54 -11.16 2.75 -175.80 -0.48 -11.64 16 15 C 0.07 1.27 8.75 59.85 0.52 1.79 16 16 C 0.23 5.30 2.22 -69.07 -0.15 5.14 16 17 H 0.07 1.67 5.96 -51.93 -0.31 1.36 16 18 C -0.16 -3.38 8.66 37.16 0.32 -3.06 16 19 C -0.53 -14.45 8.95 -34.44 -0.31 -14.76 16 20 H 0.08 2.40 7.89 -52.49 -0.41 1.98 16 21 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 22 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 23 Si 0.88 21.10 24.37 -169.99 -4.14 16.96 16 24 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 25 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.56 6.99 -51.93 -0.36 0.20 16 30 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.16 2.27 5.78 -52.48 -0.30 1.97 16 33 H 0.43 4.89 6.89 -40.82 -0.28 4.61 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.44 5.36 -51.93 -0.28 1.16 16 36 H 0.07 1.27 6.44 -51.93 -0.33 0.93 16 37 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 38 H 0.06 1.18 6.67 -51.93 -0.35 0.84 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -31.06 328.91 -5.39 -36.45 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.51 Total: 4.64 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.11 Total: 3.66 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.24 Total: -45.70 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.14 Total: -19.28 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.96 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.06 -5.39 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132140575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.615 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds