Wall clock time and date at job start Tue Mar 31 2020 04:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35511 * 117.00000 * 2 1 4 4 N 1.32191 * 119.72456 * 359.73320 * 3 2 1 5 5 C 1.31859 * 121.87551 * 179.74878 * 4 3 2 6 6 C 1.38924 * 121.09536 * 0.52532 * 5 4 3 7 7 N 1.40214 * 120.34679 * 179.76617 * 6 5 4 8 8 C 1.34779 * 120.00063 * 212.72956 * 7 6 5 9 9 O 1.21585 * 120.00104 * 5.29647 * 8 7 6 10 10 N 1.34776 * 119.99682 * 185.30295 * 8 7 6 11 11 C 1.46505 * 119.99904 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47185 * 325.00340 * 11 10 8 13 13 C 1.52998 * 109.46644 * 85.00228 * 11 10 8 14 14 C 1.50696 * 109.47042 * 205.00041 * 11 10 8 15 15 H 1.08002 * 120.00115 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99712 * 180.02562 * 14 11 10 17 17 N 1.31508 * 120.00176 * 180.02562 * 16 14 11 18 18 Si 1.86799 * 119.99951 * 0.02562 * 16 14 11 19 19 H 1.48501 * 109.47493 * 89.99968 * 18 16 14 20 20 H 1.48503 * 109.46921 * 209.99825 * 18 16 14 21 21 H 1.48499 * 109.47267 * 329.99617 * 18 16 14 22 22 C 1.38896 * 119.31451 * 359.74278 * 6 5 4 23 23 C 1.39962 * 118.29010 * 359.97438 * 22 6 5 24 24 C 1.47528 * 120.56304 * 179.97438 * 23 22 6 25 25 N 1.34778 * 120.00484 * 0.02562 * 24 23 22 26 26 O 1.21597 * 119.99861 * 180.02562 * 24 23 22 27 27 H 1.09000 * 109.47429 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46980 * 299.99969 * 1 2 3 29 29 H 1.09002 * 109.47260 * 59.99259 * 1 2 3 30 30 H 1.08007 * 119.45250 * 180.26551 * 5 4 3 31 31 H 0.97000 * 119.99488 * 32.72145 * 7 6 5 32 32 H 0.97000 * 120.00089 * 359.97438 * 10 8 7 33 33 H 1.09003 * 109.47646 * 59.99957 * 13 11 10 34 34 H 1.09003 * 109.46993 * 180.02562 * 13 11 10 35 35 H 1.09007 * 109.47513 * 299.99947 * 13 11 10 36 36 H 0.97002 * 120.00759 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.85620 * 180.02562 * 22 6 5 38 38 H 0.97001 * 119.99168 * 359.97438 * 25 24 23 39 39 H 0.97001 * 120.00585 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3189 2.3126 -0.0053 5 6 1.8730 3.5091 -0.0007 6 6 3.2540 3.6603 -0.0007 7 7 3.8265 4.9402 -0.0007 8 6 4.9979 5.1545 -0.6318 9 8 5.5102 4.2638 -1.2818 10 7 5.6016 6.3562 -0.5423 11 6 6.8752 6.5890 -1.2278 12 1 7.4694 5.6754 -1.2108 13 6 6.6067 6.9958 -2.6781 14 6 7.6282 7.6911 -0.5282 15 1 7.2010 8.1699 0.3405 16 6 8.8625 8.0881 -0.9971 17 7 9.5198 9.0495 -0.3863 18 14 9.6010 7.2604 -2.5001 19 1 9.1786 7.9881 -3.7237 20 1 11.0824 7.2809 -2.3986 21 1 9.1293 5.8542 -2.5727 22 6 4.0618 2.5304 -0.0004 23 6 3.4450 1.2740 0.0006 24 6 4.2547 0.0408 0.0004 25 7 5.6003 0.1180 -0.0002 26 8 3.7081 -1.0454 0.0008 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.2427 4.3862 -0.0010 31 1 3.3794 5.6714 0.4535 32 1 5.1928 7.0669 -0.0240 33 1 6.0125 7.9095 -2.6953 34 1 7.5543 7.1686 -3.1884 35 1 6.0621 6.1987 -3.1842 36 1 10.3881 9.3291 -0.7164 37 1 5.1381 2.6190 0.0000 38 1 6.0363 0.9845 -0.0008 39 1 6.1327 -0.6928 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274829526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:54 Heat of formation + Delta-G solvation = -82.776875 kcal Electronic energy + Delta-G solvation = -25087.839115 eV Core-core repulsion = 21223.445233 eV Total energy + Delta-G solvation = -3864.393882 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27203 -41.10657 -39.94539 -39.01453 -37.04597 -35.74745 -35.00860 -34.39755 -33.12936 -31.96191 -30.15569 -28.09375 -27.17825 -25.95266 -24.63403 -23.18055 -21.96916 -21.59863 -20.12668 -19.68030 -19.09450 -18.66789 -18.02329 -17.58597 -17.21134 -17.12616 -16.89586 -16.26996 -15.91178 -15.67559 -15.63342 -15.16612 -15.07033 -14.86821 -14.47978 -14.33526 -14.07624 -14.04010 -13.69058 -13.20067 -12.74310 -12.72647 -12.45292 -12.10662 -11.76355 -11.57447 -11.54304 -11.23811 -11.21926 -10.93990 -10.84438 -10.73484 -10.55306 -9.93113 -8.98067 -8.34706 -6.40510 -0.48057 0.06656 1.32053 1.40319 1.48501 1.57136 1.73672 2.08132 2.14509 2.29383 2.43997 2.72690 3.02458 3.20911 3.26931 3.65573 3.75494 3.87223 4.27251 4.37228 4.46155 4.46297 4.49913 4.59340 4.74059 4.76048 4.84445 4.92021 5.03942 5.33362 5.45966 5.52306 5.64540 5.83091 5.94298 6.15935 6.28658 6.28993 6.61034 6.63182 7.12920 7.22609 7.25613 7.57764 8.80339 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.003232 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.674041 B = 8661.777220 C = 9399.454969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.297 6.297 3 C 0.339 3.661 4 N -0.525 5.525 5 C 0.160 3.840 6 C 0.076 3.924 7 N -0.663 5.663 8 C 0.698 3.302 9 O -0.619 6.619 10 N -0.706 5.706 11 C 0.261 3.739 12 H 0.030 0.970 13 C -0.158 4.158 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.030 3.970 17 N -0.935 5.935 18 Si 0.937 3.063 19 H -0.264 1.264 20 H -0.297 1.297 21 H -0.256 1.256 22 C -0.017 4.017 23 C -0.213 4.213 24 C 0.569 3.431 25 N -0.834 5.834 26 O -0.564 6.564 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.429 0.571 32 H 0.408 0.592 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.046 0.954 36 H 0.269 0.731 37 H 0.154 0.846 38 H 0.410 0.590 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -11.080 1.743 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.202 6.202 3 C 0.158 3.842 4 N -0.248 5.248 5 C 0.000 4.000 6 C -0.022 4.022 7 N -0.314 5.314 8 C 0.398 3.602 9 O -0.500 6.500 10 N -0.358 5.358 11 C 0.156 3.844 12 H 0.048 0.952 13 C -0.216 4.216 14 C -0.569 4.569 15 H 0.077 0.923 16 C -0.170 4.170 17 N -0.574 5.574 18 Si 0.764 3.236 19 H -0.190 1.190 20 H -0.225 1.225 21 H -0.181 1.181 22 C -0.045 4.045 23 C -0.219 4.219 24 C 0.354 3.646 25 N -0.399 5.399 26 O -0.443 6.443 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.227 0.773 31 H 0.269 0.731 32 H 0.244 0.756 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.171 0.829 38 H 0.242 0.758 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -17.097 -12.669 1.167 21.311 hybrid contribution 1.618 0.960 -0.174 1.890 sum -15.479 -11.709 0.993 19.434 Atomic orbital electron populations 1.23170 0.75852 1.04625 1.02805 1.86496 1.24186 1.23365 1.86170 1.19932 0.88253 0.85573 0.90393 1.67532 1.39034 0.98108 1.20161 1.23022 0.90504 0.95077 0.91392 1.18314 0.93140 0.84951 1.05832 1.42220 1.22411 1.09833 1.56909 1.16111 0.80915 0.83432 0.79738 1.90861 1.66881 1.44817 1.47407 1.45115 1.24053 1.12346 1.54313 1.18655 0.81023 0.95530 0.89177 0.95199 1.22392 1.00247 1.01146 0.97844 1.21252 1.03156 1.18518 1.13955 0.92251 1.25522 0.97104 0.94965 0.99433 1.69967 1.15113 1.29991 1.42308 0.86041 0.76565 0.80485 0.80461 1.18957 1.22461 1.18065 1.21740 1.01655 0.89455 0.91648 1.19840 0.91727 0.94347 1.16025 1.17905 0.83164 0.87947 0.75554 1.43624 1.05927 1.13757 1.76547 1.90825 1.72517 1.29724 1.51280 0.86688 0.91519 0.91880 0.77334 0.73128 0.75632 0.91674 0.94263 0.93452 0.92137 0.82890 0.75832 0.75330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.38 113.37 1.18 1.72 16 2 O -0.30 -8.20 8.57 -67.27 -0.58 -8.78 16 3 C 0.34 9.11 7.51 85.13 0.64 9.75 16 4 N -0.53 -11.62 9.19 -307.53 -2.83 -14.44 16 5 C 0.16 2.81 11.10 84.85 0.94 3.76 16 6 C 0.08 1.64 6.31 38.12 0.24 1.88 16 7 N -0.66 -13.61 5.37 -316.90 -1.70 -15.31 16 8 C 0.70 21.40 8.29 179.05 1.48 22.88 16 9 O -0.62 -23.33 13.70 -3.98 -0.05 -23.39 16 10 N -0.71 -23.18 5.07 -461.41 -2.34 -25.52 16 11 C 0.26 11.08 2.15 44.24 0.10 11.18 16 12 H 0.03 1.41 6.64 -2.39 -0.02 1.40 16 13 C -0.16 -6.25 8.96 71.98 0.65 -5.61 16 14 C -0.53 -26.65 9.31 25.60 0.24 -26.41 16 15 H 0.06 3.17 7.98 -2.91 -0.02 3.15 16 16 C 0.03 1.57 5.45 84.66 0.46 2.04 16 17 N -0.93 -53.70 13.96 21.45 0.30 -53.40 16 18 Si 0.94 42.22 24.37 68.60 1.67 43.89 16 19 H -0.26 -11.28 6.87 99.48 0.68 -10.60 16 20 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.26 -11.24 6.53 99.48 0.65 -10.59 16 22 C -0.02 -0.42 8.23 22.85 0.19 -0.23 16 23 C -0.21 -5.80 5.90 -19.92 -0.12 -5.92 16 24 C 0.57 16.30 8.04 86.69 0.70 16.99 16 25 N -0.83 -17.70 8.83 -175.81 -1.55 -19.25 16 26 O -0.56 -19.80 16.02 16.84 0.27 -19.53 16 27 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.07 8.11 -2.38 -0.02 1.05 16 29 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 30 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.43 5.34 8.84 -92.71 -0.82 4.52 16 32 H 0.41 11.18 8.56 -92.71 -0.79 10.38 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.04 1.62 3.27 -2.39 -0.01 1.61 16 35 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.15 4.07 4.92 -2.91 -0.01 4.06 16 38 H 0.41 7.83 6.93 -92.71 -0.64 7.18 16 39 H 0.41 7.20 8.93 -92.71 -0.83 6.37 16 Total: -1.00 -73.46 330.26 -2.12 -75.58 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -2.00 Total: 28.14 kcal Atomic # 6 Polarization: 25.33 SS G_CDS: 6.69 Total: 32.02 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -8.12 Total: -127.93 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -0.36 Total: -51.70 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.67 Total: 43.89 kcal Total: -73.46 -2.12 -75.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274829526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.196 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds