Wall clock time and date at job start Tue Mar 31 2020 04:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46840 * 2 1 4 4 C 1.35749 * 116.99885 * 179.97438 * 3 2 1 5 5 N 1.32149 * 119.72374 * 0.02562 * 4 3 2 6 6 C 1.32008 * 121.71409 * 179.97438 * 5 4 3 7 7 C 1.38068 * 120.96857 * 0.02562 * 6 5 4 8 8 C 1.38739 * 119.34777 * 359.97438 * 7 6 5 9 9 C 1.38942 * 118.42652 * 0.02562 * 8 7 6 10 10 N 1.40169 * 120.50502 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00081 * 24.49311 * 10 9 8 12 12 O 1.21590 * 119.99858 * 5.72256 * 11 10 9 13 13 N 1.34778 * 120.00213 * 185.71539 * 11 10 9 14 14 C 1.46496 * 119.99925 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.46915 * 180.02562 * 14 13 11 16 16 O 1.21292 * 120.00068 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99805 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99811 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99975 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00056 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99676 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00172 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47201 * 89.99781 * 22 20 18 24 24 H 1.48496 * 109.47203 * 209.99930 * 22 20 18 25 25 H 1.48506 * 109.47315 * 329.99825 * 22 20 18 26 26 H 1.09002 * 109.46868 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47459 * 299.99620 * 1 2 3 28 28 H 1.09004 * 109.47452 * 60.00018 * 1 2 3 29 29 H 1.09006 * 109.47104 * 240.00485 * 2 1 3 30 30 H 1.08997 * 109.47362 * 120.00362 * 2 1 3 31 31 H 1.07996 * 119.51273 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.32173 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.78323 * 180.02562 * 8 7 6 34 34 H 0.97004 * 120.00132 * 204.49926 * 10 9 8 35 35 H 0.97002 * 119.99874 * 0.02562 * 13 11 10 36 36 H 1.08997 * 109.47222 * 300.00133 * 14 13 11 37 37 H 1.08998 * 109.47245 * 60.00342 * 14 13 11 38 38 H 0.96996 * 120.00040 * 359.97438 * 17 15 14 39 39 H 0.97008 * 119.99978 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 0.0005 5 7 4.1520 0.4734 0.0005 6 6 5.4659 0.6008 0.0005 7 6 6.0588 1.8478 0.0011 8 6 5.2586 2.9811 0.0011 9 6 3.8789 2.8167 0.0011 10 7 3.0295 3.9316 0.0017 11 6 3.4660 5.1117 -0.4817 12 8 4.5573 5.1848 -1.0128 13 7 2.6927 6.2105 -0.3766 14 6 3.1669 7.4929 -0.9025 15 6 2.1229 8.5524 -0.6599 16 8 1.0851 8.2645 -0.1020 17 7 2.3425 9.8196 -1.0627 18 6 1.3930 10.7835 -0.8415 19 1 0.4689 10.5272 -0.3447 20 6 1.6196 12.0901 -1.2563 21 7 2.7442 12.4020 -1.8602 22 14 0.3256 13.4033 -0.9555 23 1 0.5667 14.0431 0.3627 24 1 0.4039 14.4297 -2.0257 25 1 -1.0227 12.7809 -0.9644 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 6.0862 -0.2833 0.0009 32 1 7.1349 1.9399 0.0007 33 1 5.6978 3.9679 0.0011 34 1 2.1275 3.8540 0.3500 35 1 1.8221 6.1522 0.0473 36 1 4.0919 7.7727 -0.3984 37 1 3.3500 7.4013 -1.9731 38 1 3.1726 10.0498 -1.5085 39 1 2.9023 13.3142 -2.1502 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353320309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:56 Heat of formation + Delta-G solvation = -62.756943 kcal Electronic energy + Delta-G solvation = -24213.832455 eV Core-core repulsion = 20350.306703 eV Total energy + Delta-G solvation = -3863.525752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19533 -39.83437 -38.36008 -38.02840 -35.21822 -34.52422 -33.79474 -32.29177 -31.56762 -31.36530 -29.54988 -27.43332 -24.83496 -24.41551 -23.12453 -22.55268 -20.83082 -19.66944 -18.93952 -18.45919 -18.17946 -17.54039 -16.65844 -16.43593 -15.64346 -15.53305 -15.36777 -14.88773 -14.67262 -14.39628 -14.20435 -14.02553 -13.94543 -13.57084 -13.34756 -12.84061 -12.60112 -12.53379 -12.25120 -12.10908 -11.75845 -11.65621 -11.17473 -11.09823 -10.94782 -10.48137 -10.40446 -10.32683 -9.79002 -9.66556 -9.37449 -8.94279 -8.67595 -8.13473 -7.98020 -6.54273 -3.96392 0.97044 1.16734 2.52520 2.76998 3.08992 3.12169 3.20695 3.25948 3.69142 3.72848 4.01919 4.14565 4.28662 4.67597 4.75996 4.82320 4.82853 4.90928 5.02943 5.14285 5.15691 5.25216 5.46952 5.57413 5.71205 5.80116 5.83329 5.91985 5.99276 6.03472 6.16864 6.50421 6.59292 6.87043 7.08885 7.43484 7.66211 7.88926 7.98462 8.41226 8.53101 9.01653 9.35760 9.83388 10.62531 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.002474 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.481997 B =11313.682407 C =12367.877454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.071 3.929 3 O -0.311 6.311 4 C 0.290 3.710 5 N -0.521 5.521 6 C 0.105 3.895 7 C -0.183 4.183 8 C -0.062 4.062 9 C 0.116 3.884 10 N -0.673 5.673 11 C 0.705 3.295 12 O -0.582 6.582 13 N -0.715 5.715 14 C 0.127 3.873 15 C 0.427 3.573 16 O -0.597 6.597 17 N -0.548 5.548 18 C -0.305 4.305 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.166 0.834 34 H 0.414 0.586 35 H 0.410 0.590 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.396 0.604 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -22.212 3.574 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 O -0.219 6.219 4 C 0.108 3.892 5 N -0.244 5.244 6 C -0.051 4.051 7 C -0.204 4.204 8 C -0.090 4.090 9 C 0.017 3.983 10 N -0.320 5.320 11 C 0.405 3.595 12 O -0.460 6.460 13 N -0.372 5.372 14 C -0.001 4.001 15 C 0.213 3.787 16 O -0.484 6.484 17 N -0.182 5.182 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.176 0.824 32 H 0.157 0.843 33 H 0.184 0.816 34 H 0.250 0.750 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.230 0.770 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.034 -22.640 3.374 23.090 hybrid contribution -0.471 1.385 0.132 1.469 sum 2.563 -21.256 3.506 21.695 Atomic orbital electron populations 1.21835 0.93017 1.02859 1.03493 1.22565 0.94631 0.80904 1.02373 1.86182 1.16504 1.30850 1.88330 1.19415 0.84470 0.88294 0.97023 1.67301 1.06776 1.31529 1.18800 1.22294 0.88950 0.97503 0.96362 1.21947 1.01502 0.92507 1.04454 1.21849 0.90440 1.01659 0.95023 1.17547 0.90704 0.83929 1.06111 1.42393 1.17217 1.07450 1.64982 1.15800 0.84376 0.80056 0.79219 1.90866 1.21168 1.84733 1.49265 1.44781 1.22198 1.06923 1.63272 1.20860 0.97238 0.81918 1.00097 1.19709 0.88889 0.84023 0.86100 1.90500 1.28607 1.81012 1.48292 1.41779 1.19289 1.06374 1.50786 1.19730 0.99539 0.87573 1.36640 0.87654 1.25331 0.97565 0.98464 0.96336 1.69614 1.24099 1.20936 1.38752 0.85807 0.80460 0.79704 0.78030 1.20242 1.20777 1.19306 0.90353 0.91569 0.91549 0.91706 0.91717 0.82425 0.84252 0.81645 0.74988 0.75225 0.89668 0.89701 0.76989 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.07 0.64 6.03 37.16 0.22 0.86 16 3 O -0.31 -3.64 9.55 -18.96 -0.18 -3.82 16 4 C 0.29 3.69 7.51 -16.95 -0.13 3.56 16 5 N -0.52 -6.13 9.22 -13.18 -0.12 -6.25 16 6 C 0.10 1.01 11.17 -17.54 -0.20 0.82 16 7 C -0.18 -1.82 10.10 -39.46 -0.40 -2.22 16 8 C -0.06 -0.78 8.82 -39.14 -0.35 -1.13 16 9 C 0.12 1.55 6.47 -83.32 -0.54 1.01 16 10 N -0.67 -8.96 5.30 -14.00 -0.07 -9.03 16 11 C 0.71 11.18 8.38 -86.91 -0.73 10.46 16 12 O -0.58 -10.52 13.55 5.29 0.07 -10.45 16 13 N -0.72 -11.61 5.53 -66.41 -0.37 -11.98 16 14 C 0.13 2.27 6.15 -5.19 -0.03 2.23 16 15 C 0.43 9.57 7.85 -10.98 -0.09 9.49 16 16 O -0.60 -14.99 15.24 5.55 0.08 -14.91 16 17 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 18 C -0.31 -8.19 9.68 -14.93 -0.14 -8.34 16 19 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.61 13.05 55.50 0.72 -22.89 16 22 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.17 2.30 5.88 -52.48 -0.31 2.00 16 34 H 0.41 4.70 8.38 -40.82 -0.34 4.36 16 35 H 0.41 6.50 7.46 -40.82 -0.30 6.20 16 36 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.40 9.26 7.90 -40.82 -0.32 8.94 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -31.63 343.68 -6.44 -38.07 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -4.59 Total: 17.53 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: -2.09 Total: 16.63 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.10 Total: -63.55 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.02 Total: -29.18 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.63 -6.44 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353320309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.683 kcal (2) G-P(sol) polarization free energy of solvation -31.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds