Wall clock time and date at job start Tue Mar 31 2020 04:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42904 * 109.46840 * 2 1 4 4 C 1.35749 * 116.99885 * 179.97438 * 3 2 1 5 5 N 1.32149 * 119.72374 * 0.02562 * 4 3 2 6 6 C 1.32008 * 121.71409 * 179.97438 * 5 4 3 7 7 C 1.38068 * 120.96857 * 0.02562 * 6 5 4 8 8 C 1.38739 * 119.34777 * 359.97438 * 7 6 5 9 9 C 1.38942 * 118.42652 * 0.02562 * 8 7 6 10 10 N 1.40169 * 120.50502 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00081 * 24.49311 * 10 9 8 12 12 O 1.21590 * 119.99858 * 5.72256 * 11 10 9 13 13 N 1.34778 * 120.00213 * 185.71539 * 11 10 9 14 14 C 1.46496 * 119.99925 * 180.02562 * 13 11 10 15 15 C 1.50707 * 109.46915 * 180.02562 * 14 13 11 16 16 O 1.21292 * 120.00068 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99805 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99811 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99975 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00056 * 179.97438 * 18 17 15 21 21 N 1.31409 * 119.99676 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00172 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47201 * 89.99781 * 22 20 18 24 24 H 1.48496 * 109.47203 * 209.99930 * 22 20 18 25 25 H 1.48506 * 109.47315 * 329.99825 * 22 20 18 26 26 H 1.09002 * 109.46868 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47459 * 299.99620 * 1 2 3 28 28 H 1.09004 * 109.47452 * 60.00018 * 1 2 3 29 29 H 1.09006 * 109.47104 * 240.00485 * 2 1 3 30 30 H 1.08997 * 109.47362 * 120.00362 * 2 1 3 31 31 H 1.07996 * 119.51273 * 179.97438 * 6 5 4 32 32 H 1.08001 * 120.32173 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.78323 * 180.02562 * 8 7 6 34 34 H 0.97004 * 120.00132 * 204.49926 * 10 9 8 35 35 H 0.97002 * 119.99874 * 0.02562 * 13 11 10 36 36 H 1.08997 * 109.47222 * 300.00133 * 14 13 11 37 37 H 1.08998 * 109.47245 * 60.00342 * 14 13 11 38 38 H 0.96996 * 120.00040 * 359.97438 * 17 15 14 39 39 H 0.97008 * 119.99978 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3521 1.5252 0.0005 5 7 4.1520 0.4734 0.0005 6 6 5.4659 0.6008 0.0005 7 6 6.0588 1.8478 0.0011 8 6 5.2586 2.9811 0.0011 9 6 3.8789 2.8167 0.0011 10 7 3.0295 3.9316 0.0017 11 6 3.4660 5.1117 -0.4817 12 8 4.5573 5.1848 -1.0128 13 7 2.6927 6.2105 -0.3766 14 6 3.1669 7.4929 -0.9025 15 6 2.1229 8.5524 -0.6599 16 8 1.0851 8.2645 -0.1020 17 7 2.3425 9.8196 -1.0627 18 6 1.3930 10.7835 -0.8415 19 1 0.4689 10.5272 -0.3447 20 6 1.6196 12.0901 -1.2563 21 7 2.7442 12.4020 -1.8602 22 14 0.3256 13.4033 -0.9555 23 1 0.5667 14.0431 0.3627 24 1 0.4039 14.4297 -2.0257 25 1 -1.0227 12.7809 -0.9644 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 6.0862 -0.2833 0.0009 32 1 7.1349 1.9399 0.0007 33 1 5.6978 3.9679 0.0011 34 1 2.1275 3.8540 0.3500 35 1 1.8221 6.1522 0.0473 36 1 4.0919 7.7727 -0.3984 37 1 3.3500 7.4013 -1.9731 38 1 3.1726 10.0498 -1.5085 39 1 2.9023 13.3142 -2.1502 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353320309.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:55 Heat of formation + Delta-G solvation = -88.028964 kcal Electronic energy + Delta-G solvation = -24214.928332 eV Core-core repulsion = 20350.306703 eV Total energy + Delta-G solvation = -3864.621629 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.19390 -41.02106 -40.05839 -38.92914 -36.44680 -36.11566 -35.41781 -33.38555 -33.04387 -32.37859 -30.52748 -28.91500 -26.47280 -25.43626 -24.08525 -23.33711 -22.03025 -21.39833 -20.16467 -19.95889 -19.39610 -18.75116 -17.66974 -17.43513 -17.14781 -16.86292 -16.62725 -16.32737 -15.95971 -15.77816 -15.68672 -15.22304 -14.95917 -14.86065 -14.29387 -13.98696 -13.74151 -13.54375 -13.46700 -13.30125 -13.24947 -12.91480 -12.45758 -12.45422 -12.14598 -12.12835 -11.70695 -11.57387 -11.57088 -10.73224 -10.56812 -10.37566 -10.21158 -10.08792 -8.93158 -8.51187 -6.01210 0.08343 0.26733 1.32340 1.36458 1.43971 1.56179 1.86808 1.94764 1.96507 2.27904 2.81988 2.90542 3.16251 3.17096 3.43609 3.82448 4.07337 4.11164 4.15291 4.20029 4.23901 4.42144 4.44585 4.46347 4.49084 4.83219 4.90343 4.96574 5.13564 5.19527 5.24083 5.30501 5.38644 5.59290 5.74058 5.91952 6.24067 6.47831 6.78016 6.80881 7.03571 7.27811 7.44464 7.94363 8.65671 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023998 B = 0.002474 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.481997 B =11313.682407 C =12367.877454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.322 6.322 4 C 0.283 3.717 5 N -0.530 5.530 6 C 0.111 3.889 7 C -0.177 4.177 8 C -0.075 4.075 9 C 0.088 3.912 10 N -0.663 5.663 11 C 0.708 3.292 12 O -0.605 6.605 13 N -0.715 5.715 14 C 0.141 3.859 15 C 0.433 3.567 16 O -0.625 6.625 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.996 3.004 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.197 0.803 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.421 0.579 35 H 0.412 0.588 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.400 0.600 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -23.509 3.713 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 O -0.230 6.230 4 C 0.101 3.899 5 N -0.254 5.254 6 C -0.044 4.044 7 C -0.197 4.197 8 C -0.103 4.103 9 C -0.010 4.010 10 N -0.310 5.310 11 C 0.408 3.592 12 O -0.485 6.485 13 N -0.372 5.372 14 C 0.013 3.987 15 C 0.220 3.780 16 O -0.513 6.513 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.819 3.181 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.195 1.195 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.214 0.786 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.259 0.741 35 H 0.250 0.750 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.234 0.766 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.529 -23.978 3.521 24.490 hybrid contribution -0.557 1.617 0.109 1.714 sum 2.973 -22.361 3.630 22.848 Atomic orbital electron populations 1.21849 0.91455 1.04226 1.03159 1.22758 0.95833 0.79835 1.02397 1.86173 1.16230 1.32401 1.88233 1.19494 0.85010 0.88243 0.97170 1.67407 1.07720 1.31128 1.19099 1.22987 0.88558 0.98812 0.94067 1.22274 1.02826 0.91634 1.02957 1.21888 0.90622 1.02053 0.95748 1.17749 0.91098 0.84083 1.08106 1.42209 1.17620 1.06777 1.64435 1.15788 0.83913 0.80398 0.79060 1.90851 1.22079 1.85188 1.50369 1.44681 1.22368 1.06614 1.63557 1.20671 0.95858 0.81135 1.01042 1.20401 0.89141 0.84194 0.84274 1.90479 1.30145 1.81570 1.49074 1.41819 1.19185 1.06823 1.51546 1.19726 0.99806 0.88931 1.38136 0.89598 1.26114 0.99466 0.99870 0.95641 1.69677 1.25242 1.21664 1.38969 0.84880 0.77781 0.77112 0.78298 1.19548 1.19674 1.19493 0.88125 0.91621 0.92109 0.91889 0.91398 0.78612 0.81242 0.83184 0.74112 0.75007 0.88275 0.88588 0.76610 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.07 1.14 6.03 71.98 0.43 1.58 16 3 O -0.32 -7.42 9.55 -90.74 -0.87 -8.28 16 4 C 0.28 6.98 7.51 84.94 0.64 7.62 16 5 N -0.53 -11.58 9.22 -308.48 -2.84 -14.43 16 6 C 0.11 1.85 11.17 84.63 0.95 2.80 16 7 C -0.18 -3.11 10.10 22.35 0.23 -2.89 16 8 C -0.08 -1.86 8.82 22.56 0.20 -1.66 16 9 C 0.09 2.33 6.47 38.28 0.25 2.57 16 10 N -0.66 -17.67 5.30 -316.46 -1.68 -19.35 16 11 C 0.71 22.40 8.38 179.05 1.50 23.90 16 12 O -0.60 -21.80 13.55 -4.00 -0.05 -21.85 16 13 N -0.72 -23.13 5.53 -482.29 -2.67 -25.80 16 14 C 0.14 4.99 6.15 85.64 0.53 5.52 16 15 C 0.43 19.57 7.85 87.66 0.69 20.26 16 16 O -0.62 -31.79 15.24 -3.07 -0.05 -31.84 16 17 N -0.56 -27.57 5.29 -306.98 -1.62 -29.20 16 18 C -0.34 -18.36 9.68 84.04 0.81 -17.54 16 19 H 0.09 4.94 7.16 -2.91 -0.02 4.91 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 21 N -0.92 -48.21 13.05 21.66 0.28 -47.92 16 22 Si 1.00 41.45 29.55 68.60 2.03 43.48 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.09 8.11 -2.38 -0.02 1.07 16 30 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.15 4.19 5.88 -2.91 -0.02 4.17 16 34 H 0.42 9.65 8.38 -92.70 -0.78 8.87 16 35 H 0.41 13.11 7.46 -92.71 -0.69 12.42 16 36 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 39 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 Total: -1.00 -67.83 343.68 -1.11 -68.94 By element: Atomic # 1 Polarization: 46.38 SS G_CDS: -1.07 Total: 45.31 kcal Atomic # 6 Polarization: 33.51 SS G_CDS: 7.43 Total: 40.94 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -8.53 Total: -136.69 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -0.97 Total: -61.97 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -67.83 -1.11 -68.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353320309.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.086 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds