Wall clock time and date at job start Tue Mar 31 2020 03:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.64026 * 36.68020 * 10 9 7 12 12 C 1.55161 * 110.71971 * 273.54755 * 10 9 7 13 13 C 1.54911 * 101.58127 * 206.13307 * 12 10 9 14 14 N 1.47418 * 104.83317 * 37.00567 * 13 12 10 15 15 C 1.34773 * 125.65127 * 155.83655 * 14 13 12 16 16 O 1.21286 * 120.00530 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99914 * 0.02562 * 15 14 13 18 18 N 1.46501 * 109.47564 * 179.97438 * 17 15 14 19 19 C 1.36159 * 119.85781 * 269.73478 * 18 17 15 20 20 C 1.35543 * 119.25756 * 179.73110 * 19 18 17 21 21 C 1.40740 * 118.99768 * 0.55050 * 20 19 18 22 22 O 1.35160 * 120.16014 * 179.73273 * 21 20 19 23 23 N 1.32417 * 119.67040 * 359.71048 * 21 20 19 24 24 C 1.33272 * 120.73341 * 0.02562 * 23 21 20 25 25 O 1.21978 * 119.48013 * 180.02562 * 24 23 21 26 26 C 1.47022 * 108.70695 * 335.87396 * 14 13 12 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 29 29 H 1.09002 * 111.00080 * 324.20594 * 12 10 9 30 30 H 1.08999 * 111.00369 * 88.05411 * 12 10 9 31 31 H 1.09000 * 110.36771 * 155.84830 * 13 12 10 32 32 H 1.09002 * 110.36188 * 278.16881 * 13 12 10 33 33 H 1.09002 * 109.47382 * 300.00295 * 17 15 14 34 34 H 1.09006 * 109.46867 * 60.00169 * 17 15 14 35 35 H 1.08000 * 120.36807 * 359.97013 * 19 18 17 36 36 H 1.08004 * 120.49786 * 180.23944 * 20 19 18 37 37 H 0.96702 * 113.99457 * 179.97438 * 22 21 20 38 38 H 1.09007 * 109.88200 * 241.64505 * 26 14 13 39 39 H 1.09000 * 109.88598 * 120.47428 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5962 -3.2124 -0.6086 12 6 4.3084 -2.9913 1.4495 13 6 5.5887 -3.8506 1.3004 14 7 6.4281 -3.1134 0.3386 15 6 7.7692 -3.2015 0.2374 16 8 8.3591 -2.5452 -0.5946 17 6 8.5358 -4.1158 1.1580 18 7 9.9655 -4.0332 0.8491 19 6 10.5110 -4.8796 -0.0673 20 6 11.8340 -4.7889 -0.3479 21 6 12.6100 -3.8278 0.3264 22 8 13.9325 -3.7205 0.0689 23 7 12.0380 -3.0288 1.2141 24 6 10.7350 -3.1248 1.4768 25 8 10.2316 -2.3769 2.2984 26 6 5.5603 -2.2652 -0.4914 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3620 0.0007 29 1 4.4704 -2.1659 2.1427 30 1 3.4620 -3.6024 1.7630 31 1 6.0994 -3.9399 2.2592 32 1 5.3400 -4.8370 0.9087 33 1 8.3690 -3.8135 2.1919 34 1 8.1932 -5.1413 1.0196 35 1 9.8956 -5.6125 -0.5679 36 1 12.2867 -5.4477 -1.0742 37 1 14.3783 -3.0320 0.5810 38 1 5.6419 -2.5623 -1.5371 39 1 5.8455 -1.2193 -0.3777 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969232368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:45 Heat of formation + Delta-G solvation = -29.379987 kcal Electronic energy + Delta-G solvation = -24949.349840 eV Core-core repulsion = 21087.271421 eV Total energy + Delta-G solvation = -3862.078419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.15220 -40.04917 -38.97709 -37.59478 -36.92349 -34.85095 -34.38713 -31.90277 -31.56183 -30.05726 -29.21226 -27.53288 -25.19861 -24.05102 -23.23100 -22.77931 -20.33809 -20.09738 -19.74208 -18.49214 -17.88353 -17.82611 -17.32186 -16.32152 -16.23703 -15.94749 -15.39519 -15.00559 -14.84472 -14.42397 -14.29973 -14.10462 -13.95768 -13.62478 -13.36852 -12.99976 -12.68736 -12.59545 -12.23868 -12.08053 -12.00598 -11.51323 -11.08362 -10.95881 -10.79794 -10.66649 -10.61481 -10.16142 -10.14879 -10.02969 -9.68899 -9.05183 -8.93068 -8.70268 -7.41380 -5.87132 -3.25216 0.30032 1.36509 1.90928 2.36590 2.80570 2.85341 3.33956 3.37958 3.42472 3.50679 3.85920 4.08701 4.18841 4.32401 4.51419 4.62735 4.75350 4.81615 4.96080 4.97373 5.05531 5.10944 5.30999 5.41777 5.54234 5.67077 5.72840 5.78211 5.98370 6.00557 6.14355 6.27663 6.42986 6.66992 6.69638 7.37215 7.47289 7.85266 7.86986 7.93479 8.31123 9.07343 9.80181 9.97622 11.30320 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029404 B = 0.002789 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.028328 B =10038.162839 C =10407.063292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.093 0.907 9 N -0.740 5.740 10 C 0.178 3.822 11 H 0.074 0.926 12 C -0.154 4.154 13 C 0.092 3.908 14 N -0.607 5.607 15 C 0.513 3.487 16 O -0.534 6.534 17 C 0.081 3.919 18 N -0.511 5.511 19 C 0.213 3.787 20 C -0.287 4.287 21 C 0.459 3.541 22 O -0.448 6.448 23 N -0.613 5.613 24 C 0.661 3.339 25 O -0.528 6.528 26 C 0.099 3.901 27 H 0.261 0.739 28 H 0.364 0.636 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.183 0.817 36 H 0.166 0.834 37 H 0.417 0.583 38 H 0.071 0.929 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.269 -16.824 0.609 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.186 4.186 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.111 0.889 9 N -0.382 5.382 10 C 0.066 3.934 11 H 0.092 0.908 12 C -0.195 4.195 13 C -0.031 4.031 14 N -0.341 5.341 15 C 0.299 3.701 16 O -0.411 6.411 17 C -0.046 4.046 18 N -0.227 5.227 19 C 0.077 3.923 20 C -0.313 4.313 21 C 0.257 3.743 22 O -0.243 6.243 23 N -0.370 5.370 24 C 0.363 3.637 25 O -0.401 6.401 26 C -0.024 4.024 27 H 0.071 0.929 28 H 0.197 0.803 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.200 0.800 36 H 0.183 0.817 37 H 0.274 0.726 38 H 0.089 0.911 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.295 -15.789 0.818 28.154 hybrid contribution 0.349 1.128 -0.083 1.184 sum 23.644 -14.661 0.735 27.831 Atomic orbital electron populations 1.69694 1.05107 1.26075 1.56698 1.24665 0.95228 0.97286 1.01453 0.86592 0.79290 0.84920 0.77977 1.20907 1.20238 1.21545 1.19003 0.80105 0.94848 1.44101 0.88936 1.42725 1.04229 1.01458 1.89815 1.21154 0.88613 0.90083 0.93510 0.90789 1.23544 0.95073 0.99583 1.01299 1.22548 0.92586 0.95932 0.92011 1.48405 1.04882 1.44223 1.36618 1.20176 0.81349 0.83705 0.84851 1.90763 1.67824 1.45279 1.37197 1.21810 0.78147 1.01960 1.02663 1.46055 1.10480 1.31006 1.35202 1.22336 0.94136 0.90077 0.85721 1.20589 0.92628 1.07239 1.10860 1.20426 0.84331 0.85410 0.84145 1.84983 1.16785 1.58436 1.64109 1.69650 1.10701 1.31268 1.25380 1.17280 0.83160 0.80719 0.82573 1.91031 1.71761 1.42065 1.35266 1.22351 0.90541 0.95033 0.94448 0.92866 0.80266 0.90489 0.89775 0.90907 0.90878 0.84850 0.85681 0.80011 0.81688 0.72577 0.91089 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.25 -6.72 10.46 -15.06 -0.16 -6.87 16 8 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 9 N -0.74 -16.58 5.05 -51.65 -0.26 -16.84 16 10 C 0.18 3.06 3.59 -66.10 -0.24 2.82 16 11 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 12 C -0.15 -2.21 6.77 -24.58 -0.17 -2.37 16 13 C 0.09 0.96 6.69 -2.53 -0.02 0.94 16 14 N -0.61 -8.07 3.33 -170.52 -0.57 -8.63 16 15 C 0.51 7.00 7.92 -10.99 -0.09 6.91 16 16 O -0.53 -9.58 16.76 5.55 0.09 -9.49 16 17 C 0.08 0.74 4.83 -5.19 -0.03 0.71 16 18 N -0.51 -5.41 2.08 -123.15 -0.26 -5.67 16 19 C 0.21 1.38 10.40 -16.59 -0.17 1.21 16 20 C -0.29 -1.88 10.03 -39.60 -0.40 -2.28 16 21 C 0.46 4.21 7.91 -16.35 -0.13 4.08 16 22 O -0.45 -2.89 13.55 -17.18 -0.23 -3.12 16 23 N -0.61 -8.13 10.40 -16.72 -0.17 -8.31 16 24 C 0.66 9.88 8.34 -88.42 -0.74 9.15 16 25 O -0.53 -10.01 16.72 4.94 0.08 -9.93 16 26 C 0.10 1.58 6.62 -3.06 -0.02 1.56 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.36 8.27 5.37 -40.82 -0.22 8.06 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.13 1.27 7.09 -51.93 -0.37 0.90 16 34 H 0.13 0.49 8.03 -51.93 -0.42 0.08 16 35 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16 37 H 0.42 1.33 8.98 45.56 0.41 1.74 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -39.99 337.18 -6.35 -46.34 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.93 Total: 4.94 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: -2.24 Total: 16.05 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -0.48 Total: -67.03 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -39.99 -6.35 -46.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969232368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.957 kcal (2) G-P(sol) polarization free energy of solvation -39.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds