Wall clock time and date at job start Tue Mar 31 2020 03:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.64026 * 36.68020 * 10 9 7 12 12 C 1.55161 * 110.71971 * 273.54755 * 10 9 7 13 13 C 1.54911 * 101.58127 * 206.13307 * 12 10 9 14 14 N 1.47418 * 104.83317 * 37.00567 * 13 12 10 15 15 C 1.34773 * 125.65127 * 155.83655 * 14 13 12 16 16 O 1.21286 * 120.00530 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99914 * 0.02562 * 15 14 13 18 18 N 1.46501 * 109.47564 * 179.97438 * 17 15 14 19 19 C 1.36159 * 119.85781 * 269.73478 * 18 17 15 20 20 C 1.35543 * 119.25756 * 179.73110 * 19 18 17 21 21 C 1.40740 * 118.99768 * 0.55050 * 20 19 18 22 22 O 1.35160 * 120.16014 * 179.73273 * 21 20 19 23 23 N 1.32417 * 119.67040 * 359.71048 * 21 20 19 24 24 C 1.33272 * 120.73341 * 0.02562 * 23 21 20 25 25 O 1.21978 * 119.48013 * 180.02562 * 24 23 21 26 26 C 1.47022 * 108.70695 * 335.87396 * 14 13 12 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 29 29 H 1.09002 * 111.00080 * 324.20594 * 12 10 9 30 30 H 1.08999 * 111.00369 * 88.05411 * 12 10 9 31 31 H 1.09000 * 110.36771 * 155.84830 * 13 12 10 32 32 H 1.09002 * 110.36188 * 278.16881 * 13 12 10 33 33 H 1.09002 * 109.47382 * 300.00295 * 17 15 14 34 34 H 1.09006 * 109.46867 * 60.00169 * 17 15 14 35 35 H 1.08000 * 120.36807 * 359.97013 * 19 18 17 36 36 H 1.08004 * 120.49786 * 180.23944 * 20 19 18 37 37 H 0.96702 * 113.99457 * 179.97438 * 22 21 20 38 38 H 1.09007 * 109.88200 * 241.64505 * 26 14 13 39 39 H 1.09000 * 109.88598 * 120.47428 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5962 -3.2124 -0.6086 12 6 4.3084 -2.9913 1.4495 13 6 5.5887 -3.8506 1.3004 14 7 6.4281 -3.1134 0.3386 15 6 7.7692 -3.2015 0.2374 16 8 8.3591 -2.5452 -0.5946 17 6 8.5358 -4.1158 1.1580 18 7 9.9655 -4.0332 0.8491 19 6 10.5110 -4.8796 -0.0673 20 6 11.8340 -4.7889 -0.3479 21 6 12.6100 -3.8278 0.3264 22 8 13.9325 -3.7205 0.0689 23 7 12.0380 -3.0288 1.2141 24 6 10.7350 -3.1248 1.4768 25 8 10.2316 -2.3769 2.2984 26 6 5.5603 -2.2652 -0.4914 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3620 0.0007 29 1 4.4704 -2.1659 2.1427 30 1 3.4620 -3.6024 1.7630 31 1 6.0994 -3.9399 2.2592 32 1 5.3400 -4.8370 0.9087 33 1 8.3690 -3.8135 2.1919 34 1 8.1932 -5.1413 1.0196 35 1 9.8956 -5.6125 -0.5679 36 1 12.2867 -5.4477 -1.0742 37 1 14.3783 -3.0320 0.5810 38 1 5.6419 -2.5623 -1.5371 39 1 5.8455 -1.2193 -0.3777 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969232368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:45 Heat of formation + Delta-G solvation = -65.871719 kcal Electronic energy + Delta-G solvation = -24950.932240 eV Core-core repulsion = 21087.271421 eV Total energy + Delta-G solvation = -3863.660819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.93186 -41.08492 -39.70651 -38.80787 -37.82279 -36.07772 -35.60949 -33.62435 -32.39029 -31.44311 -30.23483 -28.66480 -25.90513 -25.38005 -24.46995 -23.92953 -21.75031 -20.79881 -20.75603 -19.75315 -19.13328 -18.70041 -18.26724 -17.48096 -17.17324 -16.88127 -16.45438 -16.24469 -15.82796 -15.60544 -15.44175 -15.06124 -14.83538 -14.74462 -14.49267 -14.27752 -13.97010 -13.61621 -13.51639 -13.21058 -13.14234 -13.04554 -12.74293 -12.27942 -12.23323 -12.06212 -11.83815 -11.69316 -11.47777 -11.03159 -11.00961 -10.98559 -9.79896 -9.69766 -9.35944 -8.05286 -5.38988 -0.32288 0.66381 1.17402 1.35734 1.36892 1.37928 1.42866 1.88250 2.26112 2.44324 2.66784 3.23527 3.27354 3.31856 3.51255 3.61505 3.74991 3.80683 3.92999 4.09199 4.16307 4.22513 4.36717 4.43268 4.44066 4.56776 4.66016 4.82674 4.96101 5.07599 5.19334 5.25521 5.31750 5.41764 5.75148 6.14288 6.18873 6.36986 6.64019 6.90609 7.02160 7.02994 7.78566 7.94772 9.15421 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029404 B = 0.002789 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.028328 B =10038.162839 C =10407.063292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.057 4.057 3 Si 0.942 3.058 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.295 1.295 7 C -0.223 4.223 8 H 0.072 0.928 9 N -0.749 5.749 10 C 0.168 3.832 11 H 0.080 0.920 12 C -0.151 4.151 13 C 0.101 3.899 14 N -0.606 5.606 15 C 0.509 3.491 16 O -0.585 6.585 17 C 0.087 3.913 18 N -0.514 5.514 19 C 0.216 3.784 20 C -0.284 4.284 21 C 0.455 3.545 22 O -0.440 6.440 23 N -0.659 5.659 24 C 0.649 3.351 25 O -0.593 6.593 26 C 0.108 3.892 27 H 0.258 0.742 28 H 0.361 0.639 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.192 0.808 35 H 0.240 0.760 36 H 0.203 0.797 37 H 0.429 0.571 38 H 0.074 0.926 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.309 -20.127 0.069 32.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.628 5.628 2 C -0.249 4.249 3 Si 0.771 3.229 4 H -0.209 1.209 5 H -0.187 1.187 6 H -0.222 1.222 7 C -0.354 4.354 8 H 0.090 0.910 9 N -0.392 5.392 10 C 0.059 3.941 11 H 0.097 0.903 12 C -0.191 4.191 13 C -0.020 4.020 14 N -0.340 5.340 15 C 0.298 3.702 16 O -0.466 6.466 17 C -0.038 4.038 18 N -0.229 5.229 19 C 0.083 3.917 20 C -0.309 4.309 21 C 0.256 3.744 22 O -0.237 6.237 23 N -0.419 5.419 24 C 0.351 3.649 25 O -0.472 6.472 26 C -0.016 4.016 27 H 0.067 0.933 28 H 0.194 0.806 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.209 0.791 35 H 0.256 0.744 36 H 0.220 0.780 37 H 0.289 0.711 38 H 0.092 0.908 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 25.432 -19.196 0.252 31.865 hybrid contribution -0.160 2.008 0.006 2.015 sum 25.272 -17.188 0.259 30.564 Atomic orbital electron populations 1.69839 1.06749 1.26522 1.59718 1.25341 0.95935 1.00602 1.02987 0.85605 0.78504 0.80944 0.77854 1.20878 1.18668 1.22216 1.19013 0.81938 0.93740 1.40728 0.90993 1.42794 1.02883 1.03473 1.90061 1.21403 0.88867 0.87994 0.95796 0.90257 1.23384 0.97863 0.99766 0.98130 1.22738 0.90007 0.96112 0.93186 1.48458 1.05093 1.43877 1.36534 1.21013 0.81081 0.83497 0.84631 1.90741 1.68733 1.47440 1.39642 1.22058 0.76810 1.04111 1.00850 1.45954 1.10756 1.30681 1.35516 1.23326 0.94776 0.89573 0.84020 1.21117 0.92681 1.06532 1.10603 1.20876 0.85144 0.85092 0.83253 1.84985 1.15781 1.58855 1.64034 1.69479 1.10766 1.33720 1.27894 1.17485 0.83879 0.81014 0.82530 1.90960 1.73009 1.44931 1.38344 1.22023 0.90127 0.94245 0.95249 0.93336 0.80564 0.92596 0.89062 0.87821 0.86728 0.85185 0.79054 0.74418 0.77995 0.71131 0.90764 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.29 13.97 21.65 0.30 -60.99 16 2 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 3 Si 0.94 46.04 27.74 68.60 1.90 47.94 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.26 -11.95 6.52 99.48 0.65 -11.30 16 6 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.22 -12.06 10.46 84.03 0.88 -11.18 16 8 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 9 N -0.75 -33.44 5.05 -317.33 -1.60 -35.04 16 10 C 0.17 5.60 3.59 46.18 0.17 5.76 16 11 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 12 C -0.15 -4.00 6.77 31.99 0.22 -3.78 16 13 C 0.10 1.65 6.69 86.86 0.58 2.23 16 14 N -0.61 -14.43 3.33 -811.79 -2.70 -17.13 16 15 C 0.51 12.60 7.92 87.66 0.69 13.29 16 16 O -0.59 -20.44 16.76 -3.05 -0.05 -20.49 16 17 C 0.09 1.25 4.83 85.63 0.41 1.67 16 18 N -0.51 -9.47 2.08 -661.75 -1.38 -10.85 16 19 C 0.22 1.80 10.40 83.40 0.87 2.67 16 20 C -0.28 -2.63 10.03 22.26 0.22 -2.40 16 21 C 0.45 7.57 7.91 85.22 0.67 8.25 16 22 O -0.44 -4.90 13.55 -84.38 -1.14 -6.04 16 23 N -0.66 -17.50 10.40 -438.81 -4.56 -22.07 16 24 C 0.65 19.33 8.34 179.58 1.50 20.83 16 25 O -0.59 -23.36 16.72 -5.24 -0.09 -23.45 16 26 C 0.11 3.31 6.62 86.73 0.57 3.89 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.36 16.38 5.37 -92.71 -0.50 15.88 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.10 1.17 7.48 -2.39 -0.02 1.15 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.13 2.09 7.09 -2.39 -0.02 2.07 16 34 H 0.19 0.11 8.03 -2.38 -0.02 0.10 16 35 H 0.24 -0.88 8.06 -2.91 -0.02 -0.91 16 36 H 0.20 0.31 8.06 -2.91 -0.02 0.29 16 37 H 0.43 2.36 8.98 -74.06 -0.66 1.70 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.04 1.49 7.69 -2.39 -0.02 1.48 16 Total: -1.00 -95.31 337.18 -2.18 -97.49 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -0.11 Total: 12.23 kcal Atomic # 6 Polarization: 31.16 SS G_CDS: 7.25 Total: 38.41 kcal Atomic # 7 Polarization: -136.14 SS G_CDS: -9.94 Total: -146.08 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -1.28 Total: -49.98 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -95.31 -2.18 -97.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969232368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.614 kcal (2) G-P(sol) polarization free energy of solvation -95.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds