Wall clock time and date at job start Tue Mar 31 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48498 * 109.47535 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47325 * 300.00152 * 3 2 1 6 6 H 1.48506 * 109.47006 * 59.99867 * 3 2 1 7 7 C 1.38821 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65157 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.27531 * 178.90454 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09001 * 111.00741 * 277.51995 * 12 11 10 14 14 N 1.46506 * 111.00374 * 153.66359 * 12 11 10 15 15 C 1.34774 * 119.99806 * 155.00501 * 14 12 11 16 16 O 1.21282 * 120.00225 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99807 * 180.02562 * 15 14 12 18 18 N 1.46503 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.36164 * 119.85100 * 269.72488 * 18 17 15 20 20 C 1.35543 * 119.25340 * 179.77029 * 19 18 17 21 21 C 1.40732 * 119.00248 * 0.49719 * 20 19 18 22 22 O 1.35160 * 120.16849 * 179.76719 * 21 20 19 23 23 N 1.32432 * 119.67020 * 359.75283 * 21 20 19 24 24 C 1.33272 * 120.72387 * 359.97438 * 23 21 20 25 25 O 1.21981 * 119.47458 * 180.02562 * 24 23 21 26 26 C 1.47431 * 125.64700 * 179.97438 * 9 7 2 27 27 H 0.96994 * 119.99831 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.88251 * 59.48195 * 10 9 7 29 29 H 1.09004 * 109.88394 * 298.32108 * 10 9 7 30 30 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 31 31 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 32 32 H 0.96996 * 119.99506 * 335.00056 * 14 12 11 33 33 H 1.08994 * 109.47044 * 299.99727 * 17 15 14 34 34 H 1.08998 * 109.47068 * 59.99941 * 17 15 14 35 35 H 1.08001 * 120.37119 * 359.97438 * 19 18 17 36 36 H 1.08001 * 120.49932 * 180.24546 * 20 19 18 37 37 H 0.96703 * 114.00040 * 179.97438 * 22 21 20 38 38 H 1.08999 * 110.36190 * 323.00007 * 26 9 7 39 39 H 1.08999 * 110.36356 * 85.32528 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0287 12 6 0.8492 -4.6593 -0.6160 13 1 0.8530 -4.5978 -1.7043 14 7 1.0226 -6.0439 -0.1697 15 6 1.7492 -6.9045 -0.9099 16 8 2.2592 -6.5328 -1.9456 17 6 1.9271 -8.3289 -0.4511 18 7 2.7500 -9.0553 -1.4214 19 6 2.1571 -9.7081 -2.4588 20 6 2.9304 -10.3724 -3.3521 21 6 4.3266 -10.3772 -3.1753 22 8 5.1196 -11.0360 -4.0492 23 7 4.8595 -9.7326 -2.1485 24 6 4.0881 -9.0786 -1.2805 25 8 4.6032 -8.4922 -0.3431 26 6 1.9334 -3.7312 -0.0016 27 1 -0.4849 0.8400 0.0004 28 1 -0.5576 -2.0513 -0.8836 29 1 -0.5543 -2.0854 0.9018 30 1 -0.6317 -4.4190 0.9783 31 1 -1.3005 -4.2505 -0.6765 32 1 0.6145 -6.3412 0.6585 33 1 2.4184 -8.3385 0.5218 34 1 0.9520 -8.8091 -0.3706 35 1 1.0830 -9.6940 -2.5705 36 1 2.4816 -10.8937 -4.1847 37 1 6.0629 -10.9806 -3.8434 38 1 2.8328 -3.7400 -0.6173 39 1 2.1665 -4.0429 1.0165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015138338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:14 Heat of formation + Delta-G solvation = -25.161409 kcal Electronic energy + Delta-G solvation = -24971.138328 eV Core-core repulsion = 21109.242841 eV Total energy + Delta-G solvation = -3861.895488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.08326 -39.79942 -38.84505 -37.32724 -36.85570 -34.78192 -34.16630 -32.03745 -31.54764 -29.43348 -28.62327 -26.82766 -25.13376 -24.47109 -23.55460 -21.09618 -20.46856 -20.04243 -19.99159 -18.44287 -17.83767 -17.66206 -16.84108 -16.17556 -15.97509 -15.70847 -15.14547 -15.00770 -14.65386 -14.48374 -14.30422 -14.13430 -13.78119 -13.58360 -12.96722 -12.72133 -12.46975 -12.24994 -12.16599 -11.84502 -11.07269 -11.01330 -10.93277 -10.79168 -10.62084 -10.40750 -10.09519 -10.07811 -9.96702 -9.87939 -9.71435 -8.90223 -8.85101 -8.61547 -6.85787 -5.72801 -3.06173 0.36174 1.42756 1.98712 2.47628 2.87279 3.09041 3.41129 3.47154 3.49850 3.60759 3.91815 4.14658 4.37669 4.46947 4.56587 4.68873 4.83994 5.02006 5.10260 5.22056 5.40266 5.56366 5.66938 5.72859 5.75043 6.04766 6.09301 6.24856 6.34253 6.49827 6.67114 6.72943 6.88536 7.45143 7.52801 7.54132 7.55265 7.79861 7.94292 8.13799 8.23832 9.20939 9.80393 10.44691 11.39340 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.002782 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.748859 B =10061.676542 C =10580.625587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.148 4.148 12 C 0.126 3.874 13 H 0.097 0.903 14 N -0.708 5.708 15 C 0.498 3.502 16 O -0.527 6.527 17 C 0.075 3.925 18 N -0.510 5.510 19 C 0.213 3.787 20 C -0.287 4.287 21 C 0.458 3.542 22 O -0.449 6.449 23 N -0.613 5.613 24 C 0.661 3.339 25 O -0.526 6.526 26 C 0.129 3.871 27 H 0.252 0.748 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.400 0.600 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.417 0.583 38 H 0.043 0.957 39 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -25.658 -4.231 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.187 4.187 12 C 0.022 3.978 13 H 0.115 0.885 14 N -0.359 5.359 15 C 0.281 3.719 16 O -0.403 6.403 17 C -0.052 4.052 18 N -0.227 5.227 19 C 0.077 3.923 20 C -0.314 4.314 21 C 0.256 3.744 22 O -0.244 6.244 23 N -0.370 5.370 24 C 0.362 3.638 25 O -0.400 6.400 26 C 0.001 3.999 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.234 0.766 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.200 0.800 36 H 0.183 0.817 37 H 0.274 0.726 38 H 0.061 0.939 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.785 -24.784 -4.370 25.178 hybrid contribution -0.018 0.823 0.363 0.899 sum -0.803 -23.961 -4.007 24.307 Atomic orbital electron populations 1.69948 1.04881 1.24982 1.57408 1.24804 0.95774 0.97705 1.02212 0.86010 0.78822 0.83555 0.77215 1.20433 1.21704 1.21727 1.19139 0.90584 0.82218 1.43457 0.90292 1.44394 1.01619 0.99800 1.87256 1.21155 0.84571 0.87348 1.01546 1.23186 0.95685 1.00110 0.99739 1.22450 0.97168 0.78170 1.00057 0.88455 1.45899 1.52653 1.11575 1.25821 1.20555 0.79146 0.87277 0.84899 1.90781 1.47045 1.78290 1.24138 1.21858 0.97358 0.91247 0.94712 1.46026 1.09712 1.42823 1.24099 1.22324 1.00270 0.85663 0.84019 1.20579 0.90600 1.13760 1.06424 1.20426 0.89006 0.81202 0.83723 1.84979 1.24389 1.67417 1.47577 1.69660 1.36259 1.21785 1.09264 1.17277 0.78438 0.81933 0.86110 1.91035 1.71127 1.46045 1.31793 1.21901 0.94736 0.86116 0.97098 0.93781 0.93207 0.93487 0.91943 0.91592 0.76600 0.84839 0.85738 0.80039 0.81748 0.72585 0.93911 0.96101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.31 55.49 0.57 -26.61 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.74 3.40 -169.77 -0.58 -16.32 16 10 C 0.18 4.24 5.37 -3.07 -0.02 4.22 16 11 C -0.15 -2.52 6.58 -24.90 -0.16 -2.68 16 12 C 0.13 2.21 3.45 -65.52 -0.23 1.98 16 13 H 0.10 1.90 7.54 -51.93 -0.39 1.50 16 14 N -0.71 -9.04 5.21 -51.48 -0.27 -9.30 16 15 C 0.50 6.67 7.90 -10.99 -0.09 6.59 16 16 O -0.53 -9.71 16.07 5.56 0.09 -9.62 16 17 C 0.08 0.65 5.83 -5.19 -0.03 0.62 16 18 N -0.51 -5.45 2.08 -123.16 -0.26 -5.70 16 19 C 0.21 1.43 10.40 -16.59 -0.17 1.25 16 20 C -0.29 -2.00 10.03 -39.60 -0.40 -2.39 16 21 C 0.46 4.41 7.91 -16.35 -0.13 4.28 16 22 O -0.45 -3.11 13.55 -17.18 -0.23 -3.34 16 23 N -0.61 -8.40 10.40 -16.72 -0.17 -8.57 16 24 C 0.66 10.09 8.34 -88.44 -0.74 9.35 16 25 O -0.53 -10.15 16.72 4.94 0.08 -10.07 16 26 C 0.13 2.82 6.95 -2.27 -0.02 2.81 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 29 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 30 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.40 3.61 8.57 -40.82 -0.35 3.26 16 33 H 0.13 1.17 7.38 -51.93 -0.38 0.79 16 34 H 0.12 0.38 8.03 -51.93 -0.42 -0.03 16 35 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 36 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.42 1.54 8.98 45.56 0.41 1.95 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -41.14 337.21 -6.91 -48.06 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.98 Total: -0.17 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: -2.23 Total: 19.03 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -0.70 Total: -66.51 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -41.14 -6.91 -48.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015138338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.895 kcal (2) G-P(sol) polarization free energy of solvation -41.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds