Wall clock time and date at job start Tue Mar 31 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48498 * 109.47535 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47325 * 300.00152 * 3 2 1 6 6 H 1.48506 * 109.47006 * 59.99867 * 3 2 1 7 7 C 1.38821 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65157 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.27531 * 178.90454 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09001 * 111.00741 * 277.51995 * 12 11 10 14 14 N 1.46506 * 111.00374 * 153.66359 * 12 11 10 15 15 C 1.34774 * 119.99806 * 155.00501 * 14 12 11 16 16 O 1.21282 * 120.00225 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99807 * 180.02562 * 15 14 12 18 18 N 1.46503 * 109.47143 * 179.97438 * 17 15 14 19 19 C 1.36164 * 119.85100 * 269.72488 * 18 17 15 20 20 C 1.35543 * 119.25340 * 179.77029 * 19 18 17 21 21 C 1.40732 * 119.00248 * 0.49719 * 20 19 18 22 22 O 1.35160 * 120.16849 * 179.76719 * 21 20 19 23 23 N 1.32432 * 119.67020 * 359.75283 * 21 20 19 24 24 C 1.33272 * 120.72387 * 359.97438 * 23 21 20 25 25 O 1.21981 * 119.47458 * 180.02562 * 24 23 21 26 26 C 1.47431 * 125.64700 * 179.97438 * 9 7 2 27 27 H 0.96994 * 119.99831 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.88251 * 59.48195 * 10 9 7 29 29 H 1.09004 * 109.88394 * 298.32108 * 10 9 7 30 30 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 31 31 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 32 32 H 0.96996 * 119.99506 * 335.00056 * 14 12 11 33 33 H 1.08994 * 109.47044 * 299.99727 * 17 15 14 34 34 H 1.08998 * 109.47068 * 59.99941 * 17 15 14 35 35 H 1.08001 * 120.37119 * 359.97438 * 19 18 17 36 36 H 1.08001 * 120.49932 * 180.24546 * 20 19 18 37 37 H 0.96703 * 114.00040 * 179.97438 * 22 21 20 38 38 H 1.08999 * 110.36190 * 323.00007 * 26 9 7 39 39 H 1.08999 * 110.36356 * 85.32528 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0287 12 6 0.8492 -4.6593 -0.6160 13 1 0.8530 -4.5978 -1.7043 14 7 1.0226 -6.0439 -0.1697 15 6 1.7492 -6.9045 -0.9099 16 8 2.2592 -6.5328 -1.9456 17 6 1.9271 -8.3289 -0.4511 18 7 2.7500 -9.0553 -1.4214 19 6 2.1571 -9.7081 -2.4588 20 6 2.9304 -10.3724 -3.3521 21 6 4.3266 -10.3772 -3.1753 22 8 5.1196 -11.0360 -4.0492 23 7 4.8595 -9.7326 -2.1485 24 6 4.0881 -9.0786 -1.2805 25 8 4.6032 -8.4922 -0.3431 26 6 1.9334 -3.7312 -0.0016 27 1 -0.4849 0.8400 0.0004 28 1 -0.5576 -2.0513 -0.8836 29 1 -0.5543 -2.0854 0.9018 30 1 -0.6317 -4.4190 0.9783 31 1 -1.3005 -4.2505 -0.6765 32 1 0.6145 -6.3412 0.6585 33 1 2.4184 -8.3385 0.5218 34 1 0.9520 -8.8091 -0.3706 35 1 1.0830 -9.6940 -2.5705 36 1 2.4816 -10.8937 -4.1847 37 1 6.0629 -10.9806 -3.8434 38 1 2.8328 -3.7400 -0.6173 39 1 2.1665 -4.0429 1.0165 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015138338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:14 Heat of formation + Delta-G solvation = -63.133309 kcal Electronic energy + Delta-G solvation = -24972.784913 eV Core-core repulsion = 21109.242841 eV Total energy + Delta-G solvation = -3863.542073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.89250 -40.90527 -39.66057 -38.89297 -37.80627 -35.72097 -35.55491 -33.84549 -32.33470 -31.14351 -29.80131 -28.33512 -26.44171 -25.75458 -24.45983 -22.44363 -21.99079 -21.57353 -20.76028 -19.21780 -19.08390 -18.59007 -18.40334 -17.30598 -16.92087 -16.85943 -16.61792 -16.22155 -15.91252 -15.61483 -15.41985 -15.00796 -14.81462 -14.58850 -14.23802 -14.19276 -14.04056 -13.76475 -13.31356 -13.06291 -12.98673 -12.81766 -12.43569 -12.15390 -12.03202 -12.02778 -11.86817 -11.61472 -11.43263 -10.97042 -10.95528 -10.76035 -10.18117 -9.66559 -8.95948 -7.91058 -5.26986 -0.29359 0.69154 1.24165 1.42402 1.43499 1.46023 1.54398 2.07529 2.28390 2.46076 2.72795 3.27248 3.30606 3.51972 3.65343 3.67793 3.85231 3.89977 4.00358 4.13930 4.18854 4.23106 4.46472 4.56793 4.62280 4.71840 4.82487 4.96114 5.03991 5.21452 5.34365 5.38134 5.47061 5.63294 5.71594 6.15331 6.16025 6.46259 6.67913 7.05159 7.06112 7.16235 7.70481 8.33159 9.18920 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.002782 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.748859 B =10061.676542 C =10580.625587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.627 5.627 10 C 0.181 3.819 11 C -0.123 4.123 12 C 0.148 3.852 13 H 0.077 0.923 14 N -0.692 5.692 15 C 0.496 3.504 16 O -0.582 6.582 17 C 0.083 3.917 18 N -0.513 5.513 19 C 0.218 3.782 20 C -0.287 4.287 21 C 0.454 3.546 22 O -0.441 6.441 23 N -0.661 5.661 24 C 0.648 3.352 25 O -0.593 6.593 26 C 0.125 3.875 27 H 0.250 0.750 28 H 0.014 0.986 29 H 0.018 0.982 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.423 0.577 33 H 0.133 0.867 34 H 0.197 0.803 35 H 0.241 0.759 36 H 0.202 0.798 37 H 0.429 0.571 38 H 0.013 0.987 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 -28.206 -4.593 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.089 0.911 9 N -0.353 5.353 10 C 0.056 3.944 11 C -0.162 4.162 12 C 0.042 3.958 13 H 0.095 0.905 14 N -0.345 5.345 15 C 0.282 3.718 16 O -0.462 6.462 17 C -0.043 4.043 18 N -0.228 5.228 19 C 0.084 3.916 20 C -0.312 4.312 21 C 0.255 3.745 22 O -0.237 6.237 23 N -0.420 5.420 24 C 0.350 3.650 25 O -0.472 6.472 26 C -0.002 4.002 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.262 0.738 33 H 0.151 0.849 34 H 0.214 0.786 35 H 0.257 0.743 36 H 0.219 0.781 37 H 0.288 0.712 38 H 0.031 0.969 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.990 -27.430 -4.756 28.000 hybrid contribution 0.702 1.534 0.367 1.726 sum -2.288 -25.896 -4.389 26.365 Atomic orbital electron populations 1.70146 1.05989 1.25466 1.57810 1.25615 0.96767 1.00782 1.02135 0.85016 0.77881 0.79345 0.77105 1.19752 1.21473 1.21193 1.19415 0.90739 0.83964 1.43787 0.91076 1.44678 1.02952 1.00544 1.87174 1.20995 0.83023 0.91921 0.98440 1.22983 0.96061 0.94682 1.02444 1.21847 0.95375 0.80033 0.98585 0.90510 1.45597 1.52754 1.09359 1.26751 1.21434 0.77467 0.89051 0.83840 1.90770 1.48984 1.79628 1.26784 1.22118 1.00332 0.88157 0.93655 1.45939 1.08557 1.42865 1.25470 1.23340 1.02766 0.83530 0.81923 1.21112 0.89214 1.13465 1.07390 1.20887 0.90595 0.80213 0.82785 1.84980 1.25428 1.66616 1.46724 1.69480 1.37723 1.23836 1.10973 1.17488 0.80025 0.81756 0.85734 1.90964 1.72795 1.49064 1.34369 1.22029 0.95167 0.85788 0.97219 0.94061 0.96765 0.96379 0.88600 0.88570 0.73817 0.84949 0.78556 0.74265 0.78090 0.71177 0.96882 0.95295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.05 10.31 21.65 0.22 -56.83 16 2 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 3 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.25 -14.86 10.28 84.04 0.86 -13.99 16 8 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.63 -33.66 3.40 -691.03 -2.35 -36.00 16 10 C 0.18 8.72 5.37 86.73 0.47 9.18 16 11 C -0.12 -3.90 6.58 31.78 0.21 -3.69 16 12 C 0.15 5.01 3.45 46.55 0.16 5.17 16 13 H 0.08 2.97 7.54 -2.39 -0.02 2.95 16 14 N -0.69 -15.66 5.21 -435.17 -2.27 -17.93 16 15 C 0.50 12.16 7.90 87.66 0.69 12.85 16 16 O -0.58 -21.16 16.07 -3.03 -0.05 -21.21 16 17 C 0.08 1.13 5.83 85.63 0.50 1.63 16 18 N -0.51 -9.70 2.08 -661.78 -1.38 -11.08 16 19 C 0.22 1.96 10.40 83.40 0.87 2.83 16 20 C -0.29 -2.96 10.03 22.26 0.22 -2.74 16 21 C 0.45 8.15 7.91 85.21 0.67 8.83 16 22 O -0.44 -5.51 13.55 -84.39 -1.14 -6.65 16 23 N -0.66 -18.43 10.40 -438.81 -4.56 -22.99 16 24 C 0.65 19.98 8.34 179.59 1.50 21.48 16 25 O -0.59 -23.99 16.72 -5.25 -0.09 -24.08 16 26 C 0.12 5.58 6.95 87.02 0.61 6.18 16 27 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 29 H 0.02 0.96 7.51 -2.38 -0.02 0.94 16 30 H 0.10 2.44 8.00 -2.39 -0.02 2.43 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.42 5.75 8.57 -92.71 -0.79 4.95 16 33 H 0.13 2.00 7.38 -2.39 -0.02 1.98 16 34 H 0.20 -0.19 8.03 -2.39 -0.02 -0.21 16 35 H 0.24 -0.81 8.06 -2.91 -0.02 -0.83 16 36 H 0.20 0.54 8.06 -2.91 -0.02 0.52 16 37 H 0.43 2.97 8.98 -74.06 -0.66 2.30 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -99.85 337.21 -2.71 -102.56 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -0.35 Total: 0.19 kcal Atomic # 6 Polarization: 37.48 SS G_CDS: 7.22 Total: 44.70 kcal Atomic # 7 Polarization: -134.51 SS G_CDS: -10.33 Total: -144.84 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.28 Total: -51.94 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -99.85 -2.71 -102.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015138338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.431 kcal (2) G-P(sol) polarization free energy of solvation -99.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds