Wall clock time and date at job start Tue Mar 31 2020 04:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34957 * 119.70489 * 2 1 4 4 C 1.38314 * 119.02069 * 180.02562 * 3 2 1 5 5 C 1.47310 * 120.73792 * 179.97438 * 4 3 2 6 6 O 1.21615 * 120.00522 * 174.44686 * 5 4 3 7 7 N 1.34782 * 119.99678 * 354.44503 * 5 4 3 8 8 C 1.46496 * 120.00009 * 185.16109 * 7 5 4 9 9 H 1.09001 * 110.88620 * 328.88178 * 8 7 5 10 10 C 1.55161 * 111.00427 * 205.00061 * 8 7 5 11 11 C 1.54324 * 102.94295 * 277.43036 * 10 8 7 12 12 N 1.47020 * 107.26862 * 337.80652 * 11 10 8 13 13 C 1.36934 * 125.64553 * 178.99147 * 12 11 10 14 14 H 1.08008 * 120.00108 * 185.30365 * 13 12 11 15 15 C 1.38814 * 120.00246 * 5.29755 * 13 12 11 16 16 N 1.31618 * 119.99861 * 354.45670 * 15 13 12 17 17 Si 1.86801 * 120.00251 * 174.45794 * 15 13 12 18 18 H 1.48495 * 109.47181 * 94.99525 * 17 15 13 19 19 H 1.48501 * 109.47003 * 214.99409 * 17 15 13 20 20 H 1.48494 * 109.46989 * 334.99574 * 17 15 13 21 21 C 1.47427 * 108.70552 * 358.94275 * 12 11 10 22 22 C 1.42101 * 118.52940 * 359.97438 * 4 3 2 23 23 O 1.35014 * 120.33460 * 179.97438 * 22 4 3 24 24 N 1.32216 * 119.33153 * 0.25150 * 22 4 3 25 25 C 1.33329 * 120.92698 * 359.46975 * 24 22 4 26 26 O 1.21907 * 119.19236 * 180.26181 * 25 24 22 27 27 H 1.08993 * 109.46970 * 90.00387 * 1 2 3 28 28 H 1.09000 * 109.46713 * 209.99831 * 1 2 3 29 29 H 1.08996 * 109.47391 * 329.99397 * 1 2 3 30 30 H 1.08004 * 120.48405 * 0.02674 * 3 2 1 31 31 H 0.97003 * 119.99908 * 5.16470 * 7 5 4 32 32 H 1.08997 * 110.71640 * 35.79599 * 10 8 7 33 33 H 1.08994 * 110.71654 * 159.06307 * 10 8 7 34 34 H 1.08997 * 109.87903 * 97.22634 * 11 10 8 35 35 H 1.09000 * 109.88106 * 218.38941 * 11 10 8 36 36 H 0.96997 * 120.00393 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.36597 * 265.28842 * 21 12 11 38 38 H 1.09000 * 110.36391 * 142.97078 * 21 12 11 39 39 H 0.96696 * 114.00069 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1557 -0.0005 5 6 4.2848 2.4128 -0.0011 6 8 5.4964 2.3853 0.1003 7 7 3.6446 3.5935 -0.1141 8 6 4.4131 4.8354 -0.2286 9 1 5.3576 4.7589 0.3102 10 6 3.5854 6.0496 0.2696 11 6 2.7194 6.4044 -0.9575 12 7 3.3971 5.8585 -2.1425 13 6 2.9419 5.9417 -3.4313 14 1 3.4703 5.4337 -4.2245 15 6 1.8011 6.6788 -3.7182 16 7 1.0956 7.2068 -2.7406 17 14 1.2673 6.9212 -5.4919 18 1 0.2616 5.8896 -5.8515 19 1 0.6693 8.2714 -5.6486 20 1 2.4467 6.7954 -6.3853 21 6 4.6486 5.2078 -1.7136 22 6 4.1805 -0.1008 -0.0005 23 8 5.5294 -0.1594 -0.0016 24 7 3.4638 -1.2118 -0.0050 25 6 2.1313 -1.1678 0.0010 26 8 1.5018 -2.2118 0.0014 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.5968 2.1093 0.0004 31 1 2.6750 3.6209 -0.1196 32 1 2.9585 5.7678 1.1156 33 1 4.2399 6.8804 0.5330 34 1 1.7313 5.9557 -0.8560 35 1 2.6299 7.4869 -1.0475 36 1 0.2983 7.7216 -2.9410 37 1 5.4860 5.8998 -1.8031 38 1 4.8318 4.3108 -2.3053 39 1 5.8839 -1.0590 -0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016243862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:57 Heat of formation + Delta-G solvation = -26.574381 kcal Electronic energy + Delta-G solvation = -25697.375012 eV Core-core repulsion = 21835.418254 eV Total energy + Delta-G solvation = -3861.956759 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.12485 -39.71148 -38.76163 -37.27450 -36.94330 -34.87531 -33.88592 -32.35200 -31.17636 -29.22685 -27.96575 -27.29462 -25.30053 -24.67424 -23.82010 -21.38208 -20.20027 -20.05477 -19.94390 -18.40452 -18.17732 -16.94413 -16.91553 -16.33688 -16.01861 -15.43419 -14.97602 -14.91983 -14.66666 -14.40950 -13.98582 -13.83632 -13.73880 -13.52361 -13.27410 -12.97295 -12.54531 -12.03100 -11.89470 -11.80853 -11.18475 -11.07123 -10.95415 -10.80682 -10.47718 -10.34137 -10.29616 -10.20468 -10.05314 -9.75672 -9.71515 -8.98012 -8.79468 -8.59192 -6.91120 -5.82648 -3.14324 0.26177 1.04633 2.02684 2.91535 3.02066 3.24553 3.32581 3.40120 3.41533 3.60582 3.82015 4.05497 4.42205 4.47180 4.71463 4.88537 4.89549 5.01764 5.22466 5.25075 5.35539 5.41425 5.61085 5.67991 5.75016 5.93686 6.10960 6.28175 6.39957 6.40514 6.61676 6.90550 6.94919 7.39028 7.45093 7.49715 7.68168 7.71327 7.85071 8.15141 8.36861 9.12776 9.72708 10.38392 11.29520 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.004177 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.122129 B = 6701.150643 C = 7674.274310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.518 5.518 3 C 0.245 3.755 4 C -0.293 4.293 5 C 0.578 3.422 6 O -0.522 6.522 7 N -0.704 5.704 8 C 0.130 3.870 9 H 0.095 0.905 10 C -0.154 4.154 11 C 0.175 3.825 12 N -0.604 5.604 13 C -0.226 4.226 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.922 5.922 17 Si 0.908 3.092 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.124 3.876 22 C 0.496 3.504 23 O -0.411 6.411 24 N -0.618 5.618 25 C 0.655 3.345 26 O -0.530 6.530 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.190 0.810 31 H 0.396 0.604 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.252 0.748 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.406 -9.388 9.364 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.231 5.231 3 C 0.104 3.896 4 C -0.305 4.305 5 C 0.363 3.637 6 O -0.398 6.398 7 N -0.355 5.355 8 C 0.024 3.976 9 H 0.113 0.887 10 C -0.193 4.193 11 C 0.050 3.950 12 N -0.331 5.331 13 C -0.354 4.354 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.570 5.570 17 Si 0.739 3.261 18 H -0.218 1.218 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.003 4.003 22 C 0.294 3.706 23 O -0.202 6.202 24 N -0.377 5.377 25 C 0.357 3.643 26 O -0.404 6.404 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.207 0.793 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.927 -10.266 9.293 13.878 hybrid contribution -1.096 0.465 -1.090 1.614 sum -0.170 -9.800 8.204 12.782 Atomic orbital electron populations 1.22368 0.75325 1.05799 1.05089 1.46245 1.11112 1.07100 1.58631 1.22952 0.91911 0.91406 0.83308 1.19811 0.91756 0.94418 1.24548 1.17191 0.87156 0.82195 0.77144 1.90831 1.12878 1.86603 1.49524 1.45692 1.10062 1.05841 1.73934 1.22180 0.94996 0.82281 0.98098 0.88722 1.23232 0.99597 0.96492 0.99937 1.21185 0.92960 0.98625 0.82230 1.44483 1.19807 1.65377 1.03457 1.19057 1.07482 1.25742 0.83120 0.90546 1.24771 0.97978 0.99995 0.97512 1.69945 1.18021 1.39768 1.29290 0.86155 0.78324 0.77307 0.84331 1.21785 1.21623 1.20633 1.21968 0.90361 0.95889 0.92101 1.20201 0.84873 0.88107 0.77441 1.85290 1.14033 1.36109 1.84732 1.69714 1.05498 1.27293 1.35178 1.17437 0.84746 0.82975 0.79180 1.90987 1.65980 1.30014 1.53416 0.89512 0.88044 0.88737 0.79332 0.76954 0.91575 0.90770 0.94072 0.93416 0.93786 0.95227 0.93910 0.73266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.35 59.85 0.62 1.00 16 2 N -0.52 -5.32 2.96 -128.88 -0.38 -5.70 16 3 C 0.25 2.27 9.90 -16.15 -0.16 2.11 16 4 C -0.29 -3.58 5.90 -104.70 -0.62 -4.20 16 5 C 0.58 8.42 7.75 -12.57 -0.10 8.33 16 6 O -0.52 -9.29 14.93 -15.89 -0.24 -9.53 16 7 N -0.70 -9.79 5.14 -52.84 -0.27 -10.06 16 8 C 0.13 2.06 3.47 -65.79 -0.23 1.83 16 9 H 0.09 1.48 7.48 -51.93 -0.39 1.09 16 10 C -0.15 -2.40 6.55 -24.89 -0.16 -2.57 16 11 C 0.17 3.69 5.37 -3.07 -0.02 3.68 16 12 N -0.60 -14.02 3.39 -170.08 -0.58 -14.60 16 13 C -0.23 -5.90 10.27 -15.06 -0.15 -6.06 16 14 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 15 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 16 N -0.92 -25.09 10.35 55.49 0.57 -24.52 16 17 Si 0.91 21.10 29.56 -169.99 -5.02 16.08 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.12 2.43 6.93 -2.53 -0.02 2.41 16 22 C 0.50 6.40 7.93 -15.91 -0.13 6.27 16 23 O -0.41 -4.84 11.78 -37.91 -0.45 -5.29 16 24 N -0.62 -8.77 10.38 -16.47 -0.17 -8.94 16 25 C 0.65 9.42 8.32 -88.50 -0.74 8.68 16 26 O -0.53 -9.13 16.67 5.00 0.08 -9.04 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.76 7.36 -51.93 -0.38 0.38 16 29 H 0.09 0.34 8.02 -51.93 -0.42 -0.08 16 30 H 0.19 1.09 6.48 -52.48 -0.34 0.75 16 31 H 0.40 4.74 6.78 -40.82 -0.28 4.46 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.04 0.93 7.54 -51.93 -0.39 0.54 16 35 H 0.05 1.16 7.37 -51.93 -0.38 0.78 16 36 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.41 2.85 8.98 45.56 0.41 3.26 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -36.14 331.53 -7.08 -43.22 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.83 Total: 2.17 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: -1.79 Total: 21.21 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.83 Total: -63.81 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.60 Total: -23.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.14 -7.08 -43.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016243862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.646 kcal (2) G-P(sol) polarization free energy of solvation -36.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds