Wall clock time and date at job start Tue Mar 31 2020 04:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34957 * 119.70489 * 2 1 4 4 C 1.38314 * 119.02069 * 180.02562 * 3 2 1 5 5 C 1.47310 * 120.73792 * 179.97438 * 4 3 2 6 6 O 1.21615 * 120.00522 * 174.44686 * 5 4 3 7 7 N 1.34782 * 119.99678 * 354.44503 * 5 4 3 8 8 C 1.46496 * 120.00009 * 185.16109 * 7 5 4 9 9 H 1.09001 * 110.88620 * 328.88178 * 8 7 5 10 10 C 1.55161 * 111.00427 * 205.00061 * 8 7 5 11 11 C 1.54324 * 102.94295 * 277.43036 * 10 8 7 12 12 N 1.47020 * 107.26862 * 337.80652 * 11 10 8 13 13 C 1.36934 * 125.64553 * 178.99147 * 12 11 10 14 14 H 1.08008 * 120.00108 * 185.30365 * 13 12 11 15 15 C 1.38814 * 120.00246 * 5.29755 * 13 12 11 16 16 N 1.31618 * 119.99861 * 354.45670 * 15 13 12 17 17 Si 1.86801 * 120.00251 * 174.45794 * 15 13 12 18 18 H 1.48495 * 109.47181 * 94.99525 * 17 15 13 19 19 H 1.48501 * 109.47003 * 214.99409 * 17 15 13 20 20 H 1.48494 * 109.46989 * 334.99574 * 17 15 13 21 21 C 1.47427 * 108.70552 * 358.94275 * 12 11 10 22 22 C 1.42101 * 118.52940 * 359.97438 * 4 3 2 23 23 O 1.35014 * 120.33460 * 179.97438 * 22 4 3 24 24 N 1.32216 * 119.33153 * 0.25150 * 22 4 3 25 25 C 1.33329 * 120.92698 * 359.46975 * 24 22 4 26 26 O 1.21907 * 119.19236 * 180.26181 * 25 24 22 27 27 H 1.08993 * 109.46970 * 90.00387 * 1 2 3 28 28 H 1.09000 * 109.46713 * 209.99831 * 1 2 3 29 29 H 1.08996 * 109.47391 * 329.99397 * 1 2 3 30 30 H 1.08004 * 120.48405 * 0.02674 * 3 2 1 31 31 H 0.97003 * 119.99908 * 5.16470 * 7 5 4 32 32 H 1.08997 * 110.71640 * 35.79599 * 10 8 7 33 33 H 1.08994 * 110.71654 * 159.06307 * 10 8 7 34 34 H 1.08997 * 109.87903 * 97.22634 * 11 10 8 35 35 H 1.09000 * 109.88106 * 218.38941 * 11 10 8 36 36 H 0.96997 * 120.00393 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.36597 * 265.28842 * 21 12 11 38 38 H 1.09000 * 110.36391 * 142.97078 * 21 12 11 39 39 H 0.96696 * 114.00069 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1557 -0.0005 5 6 4.2848 2.4128 -0.0011 6 8 5.4964 2.3853 0.1003 7 7 3.6446 3.5935 -0.1141 8 6 4.4131 4.8354 -0.2286 9 1 5.3576 4.7589 0.3102 10 6 3.5854 6.0496 0.2696 11 6 2.7194 6.4044 -0.9575 12 7 3.3971 5.8585 -2.1425 13 6 2.9419 5.9417 -3.4313 14 1 3.4703 5.4337 -4.2245 15 6 1.8011 6.6788 -3.7182 16 7 1.0956 7.2068 -2.7406 17 14 1.2673 6.9212 -5.4919 18 1 0.2616 5.8896 -5.8515 19 1 0.6693 8.2714 -5.6486 20 1 2.4467 6.7954 -6.3853 21 6 4.6486 5.2078 -1.7136 22 6 4.1805 -0.1008 -0.0005 23 8 5.5294 -0.1594 -0.0016 24 7 3.4638 -1.2118 -0.0050 25 6 2.1313 -1.1678 0.0010 26 8 1.5018 -2.2118 0.0014 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.5968 2.1093 0.0004 31 1 2.6750 3.6209 -0.1196 32 1 2.9585 5.7678 1.1156 33 1 4.2399 6.8804 0.5330 34 1 1.7313 5.9557 -0.8560 35 1 2.6299 7.4869 -1.0475 36 1 0.2983 7.7216 -2.9410 37 1 5.4860 5.8998 -1.8031 38 1 4.8318 4.3108 -2.3053 39 1 5.8839 -1.0590 -0.0018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016243862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:55 Heat of formation + Delta-G solvation = -57.026974 kcal Electronic energy + Delta-G solvation = -25698.695536 eV Core-core repulsion = 21835.418254 eV Total energy + Delta-G solvation = -3863.277282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.07713 -40.88581 -39.78661 -38.66520 -38.04401 -35.78974 -35.37822 -33.85250 -32.42770 -30.82920 -28.92813 -28.57236 -26.46705 -26.16443 -24.90585 -22.55978 -21.83096 -21.32880 -20.94536 -19.34840 -19.29489 -18.64077 -17.86064 -17.36554 -17.28237 -16.64399 -16.41776 -16.02971 -15.84964 -15.64534 -15.36590 -15.04636 -14.87086 -14.58708 -14.43071 -13.94422 -13.76688 -13.52864 -13.47411 -12.89833 -12.75328 -12.63374 -12.28006 -12.19832 -12.08315 -11.97780 -11.71979 -11.52708 -11.34418 -11.29397 -10.88202 -10.65234 -10.11034 -9.79922 -8.78754 -7.82065 -5.13616 -0.57592 0.02257 1.19649 1.47771 1.50964 1.58275 1.87543 2.05304 2.18355 2.52418 2.58906 2.95940 3.29763 3.37535 3.56659 3.75855 3.90363 4.01852 4.09457 4.16110 4.20873 4.39310 4.42371 4.75720 4.77895 4.82021 4.85422 4.99127 5.04697 5.09029 5.14937 5.51473 5.61884 5.77757 5.84878 6.13753 6.26063 6.45954 6.60366 6.86472 7.18012 7.25936 7.83417 8.47264 9.27889 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.004177 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.122129 B = 6701.150643 C = 7674.274310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.509 5.509 3 C 0.277 3.723 4 C -0.315 4.315 5 C 0.585 3.415 6 O -0.557 6.557 7 N -0.697 5.697 8 C 0.145 3.855 9 H 0.105 0.895 10 C -0.133 4.133 11 C 0.181 3.819 12 N -0.620 5.620 13 C -0.237 4.237 14 H 0.071 0.929 15 C -0.052 4.052 16 N -0.941 5.941 17 Si 0.964 3.036 18 H -0.286 1.286 19 H -0.295 1.295 20 H -0.278 1.278 21 C 0.120 3.880 22 C 0.496 3.504 23 O -0.420 6.420 24 N -0.642 5.642 25 C 0.647 3.353 26 O -0.570 6.570 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.232 0.768 31 H 0.407 0.593 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.009 0.991 36 H 0.247 0.753 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -9.027 10.129 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.220 5.220 3 C 0.135 3.865 4 C -0.328 4.328 5 C 0.371 3.629 6 O -0.436 6.436 7 N -0.349 5.349 8 C 0.039 3.961 9 H 0.123 0.877 10 C -0.172 4.172 11 C 0.057 3.943 12 N -0.347 5.347 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.246 4.246 16 N -0.590 5.590 17 Si 0.794 3.206 18 H -0.213 1.213 19 H -0.222 1.222 20 H -0.204 1.204 21 C -0.006 4.006 22 C 0.295 3.705 23 O -0.213 6.213 24 N -0.402 5.402 25 C 0.349 3.651 26 O -0.447 6.447 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.248 0.752 31 H 0.244 0.756 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 0.186 -9.908 10.067 14.126 hybrid contribution -0.837 0.359 -1.358 1.635 sum -0.651 -9.549 8.709 12.941 Atomic orbital electron populations 1.22727 0.72852 1.07500 1.06178 1.46248 1.12571 1.06322 1.56884 1.23459 0.90991 0.92195 0.79841 1.19633 0.92915 0.93061 1.27147 1.17354 0.86770 0.82685 0.76047 1.90815 1.14520 1.87107 1.51186 1.45561 1.10557 1.05114 1.73641 1.21940 0.95860 0.83115 0.95206 0.87668 1.23088 0.99148 0.96643 0.98283 1.21009 0.93482 0.95997 0.83849 1.44693 1.21070 1.65665 1.03231 1.19287 1.07382 1.25401 0.84605 0.91155 1.25386 0.98371 1.00292 1.00527 1.70110 1.18111 1.40300 1.30471 0.85284 0.77825 0.76728 0.80807 1.21348 1.22188 1.20373 1.22088 0.88982 0.94992 0.94572 1.20294 0.85084 0.88125 0.76950 1.85269 1.13782 1.37849 1.84415 1.69611 1.05966 1.28235 1.36424 1.17545 0.84875 0.83601 0.79040 1.90954 1.66698 1.31626 1.55438 0.88719 0.88949 0.84527 0.75188 0.75615 0.88141 0.89525 0.95595 0.97314 0.94342 0.95346 0.95226 0.71320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.35 127.77 1.32 1.83 16 2 N -0.51 -9.25 2.96 -679.97 -2.01 -11.26 16 3 C 0.28 4.21 9.90 84.23 0.83 5.05 16 4 C -0.32 -7.08 5.90 -19.91 -0.12 -7.19 16 5 C 0.58 15.81 7.75 86.63 0.67 16.48 16 6 O -0.56 -19.10 14.93 16.15 0.24 -18.86 16 7 N -0.70 -17.34 5.14 -439.33 -2.26 -19.60 16 8 C 0.14 4.22 3.47 46.38 0.16 4.38 16 9 H 0.11 2.97 7.48 -2.39 -0.02 2.95 16 10 C -0.13 -3.75 6.55 31.78 0.21 -3.54 16 11 C 0.18 7.46 5.37 86.73 0.47 7.92 16 12 N -0.62 -28.35 3.39 -692.00 -2.35 -30.70 16 13 C -0.24 -12.37 10.27 84.03 0.86 -11.51 16 14 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 15 C -0.05 -2.73 5.48 84.86 0.47 -2.26 16 16 N -0.94 -51.12 10.35 21.65 0.22 -50.89 16 17 Si 0.96 43.15 29.56 68.60 2.03 45.17 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.12 4.57 6.93 86.85 0.60 5.17 16 22 C 0.50 12.40 7.93 85.59 0.68 13.08 16 23 O -0.42 -9.72 11.78 -62.63 -0.74 -10.46 16 24 N -0.64 -18.00 10.38 -438.19 -4.55 -22.55 16 25 C 0.65 18.14 8.32 179.61 1.49 19.64 16 26 O -0.57 -19.69 16.67 -5.01 -0.08 -19.77 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.22 7.36 -2.39 -0.02 1.21 16 29 H 0.14 0.31 8.02 -2.39 -0.02 0.29 16 30 H 0.23 1.47 6.48 -2.91 -0.02 1.45 16 31 H 0.41 8.18 6.78 -92.71 -0.63 7.56 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.03 1.13 7.54 -2.39 -0.02 1.12 16 35 H 0.01 0.42 7.37 -2.39 -0.02 0.40 16 36 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.43 5.87 8.98 -74.06 -0.67 5.21 16 Total: -1.00 -80.06 331.53 -2.02 -82.08 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -0.17 Total: 7.80 kcal Atomic # 6 Polarization: 41.39 SS G_CDS: 7.65 Total: 49.04 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -10.94 Total: -135.00 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -0.58 Total: -49.10 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -80.06 -2.02 -82.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016243862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.057 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds