Wall clock time and date at job start Tue Mar 31 2020 04:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35660 * 119.95188 * 2 1 4 4 O 1.34691 * 119.10744 * 359.97438 * 3 2 1 5 5 N 1.31849 * 121.77548 * 179.70424 * 3 2 1 6 6 C 1.32563 * 121.61053 * 0.57192 * 5 3 2 7 7 C 1.39433 * 119.70355 * 359.72001 * 6 5 3 8 8 C 1.46898 * 120.82186 * 180.02562 * 7 6 5 9 9 O 1.21672 * 119.99575 * 174.13155 * 8 7 6 10 10 N 1.34768 * 120.00123 * 354.13334 * 8 7 6 11 11 C 1.46499 * 119.99945 * 184.82514 * 10 8 7 12 12 H 1.08995 * 112.85208 * 47.42885 * 11 10 8 13 13 C 1.53781 * 113.61311 * 178.73377 * 11 10 8 14 14 C 1.53785 * 87.08064 * 89.11671 * 13 11 10 15 15 H 1.09001 * 113.69086 * 139.98993 * 14 13 11 16 16 N 1.46498 * 113.61255 * 270.88074 * 14 13 11 17 17 C 1.36934 * 120.00263 * 254.28033 * 16 14 13 18 18 H 1.07997 * 119.99935 * 5.61070 * 17 16 14 19 19 C 1.38817 * 120.00209 * 185.60802 * 17 16 14 20 20 N 1.31612 * 120.00052 * 184.65748 * 19 17 16 21 21 Si 1.86800 * 119.99566 * 4.66351 * 19 17 16 22 22 H 1.48503 * 109.46969 * 92.93143 * 21 19 17 23 23 H 1.48506 * 109.46904 * 212.92744 * 21 19 17 24 24 H 1.48489 * 109.47483 * 332.92855 * 21 19 17 25 25 C 1.53779 * 113.61446 * 276.23227 * 11 10 8 26 26 C 1.35018 * 119.95725 * 180.26783 * 2 1 3 27 27 O 1.21826 * 120.76789 * 0.02562 * 26 2 1 28 28 H 1.09002 * 109.47216 * 269.72951 * 1 2 3 29 29 H 1.09007 * 109.46867 * 149.73207 * 1 2 3 30 30 H 1.09000 * 109.47668 * 29.73125 * 1 2 3 31 31 H 0.96699 * 116.99406 * 180.02562 * 4 3 2 32 32 H 1.07995 * 120.15187 * 179.69423 * 6 5 3 33 33 H 0.97002 * 120.00501 * 4.81981 * 10 8 7 34 34 H 1.09008 * 113.61289 * 203.66386 * 13 11 10 35 35 H 1.08993 * 113.61788 * 334.56182 * 13 11 10 36 36 H 0.97004 * 119.99984 * 74.27499 * 16 14 13 37 37 H 0.96997 * 119.99870 * 179.97438 * 20 19 17 38 38 H 1.09002 * 113.61444 * 25.42739 * 25 11 10 39 39 H 1.08993 * 113.61905 * 156.33861 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1423 1.1754 0.0000 4 8 1.4498 2.3307 -0.0005 5 7 3.4601 1.2174 0.0058 6 6 4.1906 0.1112 0.0006 7 6 3.5606 -1.1327 -0.0053 8 6 4.3459 -2.3741 -0.0105 9 8 3.7852 -3.4491 0.0921 10 7 5.6874 -2.3224 -0.1289 11 6 6.4612 -3.5613 -0.2405 12 1 6.0450 -4.2561 -0.9700 13 6 7.9733 -3.3310 -0.3994 14 6 8.0584 -3.3534 1.1359 15 1 8.9327 -3.8801 1.5185 16 7 7.8715 -2.0380 1.7532 17 6 8.9459 -1.3667 2.2731 18 1 9.9425 -1.7636 2.1482 19 6 8.7540 -0.1761 2.9605 20 7 9.7918 0.5160 3.3804 21 14 7.0229 0.4437 3.2897 22 1 6.5698 -0.0365 4.6199 23 1 7.0169 1.9286 3.2712 24 1 6.1058 -0.0681 2.2400 25 6 6.7823 -4.2113 1.1157 26 6 2.1392 -1.1698 -0.0055 27 8 1.5435 -2.2324 -0.0109 28 1 -0.3634 -0.0049 1.0277 29 1 -0.3633 -0.8876 -0.5180 30 1 -0.3634 0.8923 -0.5096 31 1 1.9632 3.1501 -0.0009 32 1 5.2687 0.1730 0.0006 33 1 6.1406 -1.4649 -0.1403 34 1 8.4935 -4.1609 -0.8777 35 1 8.2242 -2.3646 -0.8366 36 1 6.9867 -1.6425 1.7937 37 1 9.6577 1.3481 3.8604 38 1 6.0717 -3.9555 1.9016 39 1 6.9770 -5.2818 1.0517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022528990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:34 Heat of formation + Delta-G solvation = -11.321931 kcal Electronic energy + Delta-G solvation = -26012.296141 eV Core-core repulsion = 22151.000778 eV Total energy + Delta-G solvation = -3861.295363 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19688 -39.91456 -39.06734 -37.67102 -37.16450 -35.39881 -33.71794 -32.73566 -30.87569 -30.24583 -28.35054 -25.57813 -25.18093 -24.32892 -23.99328 -22.54200 -20.71127 -19.62057 -19.37446 -18.77091 -17.94705 -17.55453 -17.19606 -16.22929 -16.10879 -15.69411 -15.12136 -14.84689 -14.68361 -14.58029 -14.19972 -13.91556 -13.77428 -13.45937 -13.35534 -12.96112 -12.73048 -12.35335 -12.18123 -11.96764 -11.68701 -11.01330 -11.00749 -10.88438 -10.60467 -10.41763 -10.32733 -10.20624 -9.77196 -9.60533 -9.44306 -9.01394 -8.72483 -8.45758 -7.34474 -5.85807 -3.21754 0.10326 1.39595 1.59511 2.79572 2.88922 3.19444 3.32977 3.37379 3.43498 3.70348 3.76756 4.17454 4.48568 4.67189 4.84402 4.86920 4.98212 5.13710 5.14371 5.22477 5.29903 5.33486 5.39238 5.55716 5.75182 5.78392 6.08923 6.13442 6.22082 6.35478 6.53704 6.55675 6.61398 6.75037 7.01319 7.28980 7.59399 7.81056 7.95194 8.34810 8.55998 9.13027 9.84745 10.05703 11.32229 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.005501 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.400647 B = 5088.903944 C = 6672.495170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.513 5.513 3 C 0.606 3.394 4 O -0.455 6.455 5 N -0.590 5.590 6 C 0.241 3.759 7 C -0.341 4.341 8 C 0.580 3.420 9 O -0.518 6.518 10 N -0.708 5.708 11 C 0.130 3.870 12 H 0.082 0.918 13 C -0.175 4.175 14 C 0.169 3.831 15 H 0.073 0.927 16 N -0.731 5.731 17 C -0.246 4.246 18 H 0.093 0.907 19 C 0.007 3.993 20 N -0.929 5.929 21 Si 0.885 3.115 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.283 1.283 25 C -0.169 4.169 26 C 0.555 3.445 27 O -0.482 6.482 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.445 0.555 32 H 0.179 0.821 33 H 0.399 0.601 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.068 0.932 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.299 3.648 -10.133 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.243 5.243 3 C 0.307 3.693 4 O -0.253 6.253 5 N -0.331 5.331 6 C 0.096 3.904 7 C -0.352 4.352 8 C 0.366 3.634 9 O -0.394 6.394 10 N -0.362 5.362 11 C 0.025 3.975 12 H 0.100 0.900 13 C -0.216 4.216 14 C 0.057 3.943 15 H 0.091 0.909 16 N -0.373 5.373 17 C -0.376 4.376 18 H 0.111 0.889 19 C -0.189 4.189 20 N -0.576 5.576 21 Si 0.716 3.284 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.209 4.209 26 C 0.353 3.647 27 O -0.354 6.354 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.307 0.693 32 H 0.195 0.805 33 H 0.236 0.764 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.197 0.803 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.006 2.635 -9.952 19.879 hybrid contribution -0.978 1.049 0.369 1.481 sum -17.983 3.684 -9.583 20.707 Atomic orbital electron populations 1.22210 0.75919 1.05590 1.04722 1.46587 1.11025 1.05072 1.61578 1.20357 0.85127 0.81530 0.82279 1.84140 1.39293 1.14878 1.86947 1.68409 1.00573 1.31875 1.32289 1.23186 1.00409 0.85717 0.81123 1.21569 0.93210 0.95902 1.24550 1.17071 0.81676 0.87632 0.77051 1.90838 1.70518 1.29613 1.48446 1.45671 1.05680 1.09765 1.75087 1.21747 0.91821 0.85822 0.98124 0.89974 1.24093 0.93138 1.02338 1.02044 1.21150 0.95775 0.86733 0.90646 0.90938 1.42687 1.07607 1.17058 1.69949 1.19134 0.88237 1.02757 1.27455 0.88915 1.24703 0.96387 0.97627 1.00163 1.69695 1.28083 1.16449 1.43374 0.86606 0.85425 0.77949 0.78407 1.21229 1.21502 1.20964 1.23863 0.99799 0.99727 0.97516 1.16733 0.87544 0.81944 0.78494 1.90996 1.69505 1.26136 1.48769 0.89960 0.88245 0.88682 0.69275 0.80464 0.76413 0.89391 0.90695 0.80336 0.92964 0.91354 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.16 59.85 0.61 1.05 16 2 N -0.51 -5.87 2.99 -128.28 -0.38 -6.25 16 3 C 0.61 5.91 8.60 -88.67 -0.76 5.14 16 4 O -0.45 -2.38 12.18 -15.83 -0.19 -2.57 16 5 N -0.59 -6.90 10.31 -13.97 -0.14 -7.05 16 6 C 0.24 3.31 10.76 -16.79 -0.18 3.13 16 7 C -0.34 -5.53 5.93 -104.43 -0.62 -6.15 16 8 C 0.58 10.76 7.73 -12.76 -0.10 10.66 16 9 O -0.52 -11.45 15.44 -15.84 -0.24 -11.69 16 10 N -0.71 -11.85 4.25 -54.26 -0.23 -12.08 16 11 C 0.13 2.10 3.96 -67.12 -0.27 1.84 16 12 H 0.08 1.29 8.12 -51.93 -0.42 0.87 16 13 C -0.17 -2.71 7.57 -25.92 -0.20 -2.91 16 14 C 0.17 3.15 4.56 -67.12 -0.31 2.84 16 15 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 16 N -0.73 -16.45 4.82 -52.63 -0.25 -16.71 16 17 C -0.25 -6.61 10.45 -15.06 -0.16 -6.76 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -28.07 13.97 55.49 0.78 -27.29 16 21 Si 0.89 21.23 27.97 -169.99 -4.76 16.47 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.05 6.20 56.52 0.35 -5.70 16 25 C -0.17 -2.89 7.62 -25.92 -0.20 -3.09 16 26 C 0.56 8.88 7.47 -14.64 -0.11 8.77 16 27 O -0.48 -9.32 15.10 -15.98 -0.24 -9.56 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.83 7.45 -51.93 -0.39 0.45 16 30 H 0.09 0.48 7.33 -51.93 -0.38 0.09 16 31 H 0.44 0.39 9.08 45.56 0.41 0.81 16 32 H 0.18 2.29 6.49 -52.49 -0.34 1.95 16 33 H 0.40 6.31 5.98 -40.82 -0.24 6.07 16 34 H 0.09 1.15 8.14 -51.92 -0.42 0.72 16 35 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 36 H 0.36 8.05 4.12 -40.82 -0.17 7.88 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -37.44 331.52 -6.73 -44.16 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -3.67 Total: 12.94 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: -2.38 Total: 14.63 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.24 Total: -69.38 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.68 Total: -23.82 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.76 Total: 16.47 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.44 -6.73 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022528990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.842 kcal (2) G-P(sol) polarization free energy of solvation -37.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds