Wall clock time and date at job start Tue Mar 31 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35660 * 119.95188 * 2 1 4 4 O 1.34691 * 119.10744 * 359.97438 * 3 2 1 5 5 N 1.31849 * 121.77548 * 179.70424 * 3 2 1 6 6 C 1.32563 * 121.61053 * 0.57192 * 5 3 2 7 7 C 1.39433 * 119.70355 * 359.72001 * 6 5 3 8 8 C 1.46898 * 120.82186 * 180.02562 * 7 6 5 9 9 O 1.21672 * 119.99575 * 174.13155 * 8 7 6 10 10 N 1.34768 * 120.00123 * 354.13334 * 8 7 6 11 11 C 1.46499 * 119.99945 * 184.82514 * 10 8 7 12 12 H 1.08995 * 112.85208 * 47.42885 * 11 10 8 13 13 C 1.53781 * 113.61311 * 178.73377 * 11 10 8 14 14 C 1.53785 * 87.08064 * 89.11671 * 13 11 10 15 15 H 1.09001 * 113.69086 * 139.98993 * 14 13 11 16 16 N 1.46498 * 113.61255 * 270.88074 * 14 13 11 17 17 C 1.36934 * 120.00263 * 254.28033 * 16 14 13 18 18 H 1.07997 * 119.99935 * 5.61070 * 17 16 14 19 19 C 1.38817 * 120.00209 * 185.60802 * 17 16 14 20 20 N 1.31612 * 120.00052 * 184.65748 * 19 17 16 21 21 Si 1.86800 * 119.99566 * 4.66351 * 19 17 16 22 22 H 1.48503 * 109.46969 * 92.93143 * 21 19 17 23 23 H 1.48506 * 109.46904 * 212.92744 * 21 19 17 24 24 H 1.48489 * 109.47483 * 332.92855 * 21 19 17 25 25 C 1.53779 * 113.61446 * 276.23227 * 11 10 8 26 26 C 1.35018 * 119.95725 * 180.26783 * 2 1 3 27 27 O 1.21826 * 120.76789 * 0.02562 * 26 2 1 28 28 H 1.09002 * 109.47216 * 269.72951 * 1 2 3 29 29 H 1.09007 * 109.46867 * 149.73207 * 1 2 3 30 30 H 1.09000 * 109.47668 * 29.73125 * 1 2 3 31 31 H 0.96699 * 116.99406 * 180.02562 * 4 3 2 32 32 H 1.07995 * 120.15187 * 179.69423 * 6 5 3 33 33 H 0.97002 * 120.00501 * 4.81981 * 10 8 7 34 34 H 1.09008 * 113.61289 * 203.66386 * 13 11 10 35 35 H 1.08993 * 113.61788 * 334.56182 * 13 11 10 36 36 H 0.97004 * 119.99984 * 74.27499 * 16 14 13 37 37 H 0.96997 * 119.99870 * 179.97438 * 20 19 17 38 38 H 1.09002 * 113.61444 * 25.42739 * 25 11 10 39 39 H 1.08993 * 113.61905 * 156.33861 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1423 1.1754 0.0000 4 8 1.4498 2.3307 -0.0005 5 7 3.4601 1.2174 0.0058 6 6 4.1906 0.1112 0.0006 7 6 3.5606 -1.1327 -0.0053 8 6 4.3459 -2.3741 -0.0105 9 8 3.7852 -3.4491 0.0921 10 7 5.6874 -2.3224 -0.1289 11 6 6.4612 -3.5613 -0.2405 12 1 6.0450 -4.2561 -0.9700 13 6 7.9733 -3.3310 -0.3994 14 6 8.0584 -3.3534 1.1359 15 1 8.9327 -3.8801 1.5185 16 7 7.8715 -2.0380 1.7532 17 6 8.9459 -1.3667 2.2731 18 1 9.9425 -1.7636 2.1482 19 6 8.7540 -0.1761 2.9605 20 7 9.7918 0.5160 3.3804 21 14 7.0229 0.4437 3.2897 22 1 6.5698 -0.0365 4.6199 23 1 7.0169 1.9286 3.2712 24 1 6.1058 -0.0681 2.2400 25 6 6.7823 -4.2113 1.1157 26 6 2.1392 -1.1698 -0.0055 27 8 1.5435 -2.2324 -0.0109 28 1 -0.3634 -0.0049 1.0277 29 1 -0.3633 -0.8876 -0.5180 30 1 -0.3634 0.8923 -0.5096 31 1 1.9632 3.1501 -0.0009 32 1 5.2687 0.1730 0.0006 33 1 6.1406 -1.4649 -0.1403 34 1 8.4935 -4.1609 -0.8777 35 1 8.2242 -2.3646 -0.8366 36 1 6.9867 -1.6425 1.7937 37 1 9.6577 1.3481 3.8604 38 1 6.0717 -3.9555 1.9016 39 1 6.9770 -5.2818 1.0517 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022528990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:31 Heat of formation + Delta-G solvation = -42.480879 kcal Electronic energy + Delta-G solvation = -26013.647294 eV Core-core repulsion = 22151.000778 eV Total energy + Delta-G solvation = -3862.646516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.16899 -41.22212 -40.03051 -39.04370 -38.08203 -36.37803 -35.53743 -34.24106 -32.57940 -31.60167 -29.12149 -26.80724 -26.46242 -25.91253 -24.97503 -24.10168 -22.03198 -20.80565 -20.41530 -19.93302 -19.38029 -19.08858 -18.09675 -17.31674 -17.12998 -16.99633 -16.55929 -16.32242 -15.92731 -15.70962 -15.55667 -15.22275 -14.95778 -14.75304 -14.53976 -14.30046 -13.89962 -13.56759 -13.46835 -13.22006 -13.08860 -12.87892 -12.55471 -12.14516 -11.98745 -11.90384 -11.78121 -11.46972 -11.39946 -11.09083 -10.95198 -10.81330 -10.06599 -9.63153 -9.27263 -8.00370 -5.33822 -0.87074 0.54674 0.57221 1.28904 1.41790 1.45651 1.60928 1.98869 2.31322 2.46947 2.51439 2.94251 3.18073 3.29700 3.53793 3.72057 3.73202 3.89345 3.91647 4.20843 4.27331 4.28327 4.35549 4.39025 4.65062 4.74336 4.84344 4.93164 5.01784 5.07490 5.15523 5.25673 5.33694 5.65320 5.85859 5.89027 6.25381 6.45669 6.49549 6.53307 7.09707 7.23426 7.85948 8.05977 9.20910 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.005501 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.400647 B = 5088.903944 C = 6672.495170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.512 5.512 3 C 0.625 3.375 4 O -0.428 6.428 5 N -0.593 5.593 6 C 0.264 3.736 7 C -0.382 4.382 8 C 0.578 3.422 9 O -0.565 6.565 10 N -0.704 5.704 11 C 0.128 3.872 12 H 0.092 0.908 13 C -0.151 4.151 14 C 0.148 3.852 15 H 0.068 0.932 16 N -0.734 5.734 17 C -0.229 4.229 18 H 0.063 0.937 19 C -0.056 4.056 20 N -0.978 5.978 21 Si 0.946 3.054 22 H -0.300 1.300 23 H -0.285 1.285 24 H -0.248 1.248 25 C -0.161 4.161 26 C 0.552 3.448 27 O -0.530 6.530 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.467 0.533 32 H 0.186 0.814 33 H 0.404 0.596 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.365 0.635 37 H 0.258 0.742 38 H 0.041 0.959 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 5.155 -11.373 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.240 5.240 3 C 0.328 3.672 4 O -0.228 6.228 5 N -0.334 5.334 6 C 0.116 3.884 7 C -0.394 4.394 8 C 0.366 3.634 9 O -0.444 6.444 10 N -0.357 5.357 11 C 0.023 3.977 12 H 0.109 0.891 13 C -0.191 4.191 14 C 0.038 3.962 15 H 0.086 0.914 16 N -0.377 5.377 17 C -0.360 4.360 18 H 0.081 0.919 19 C -0.248 4.248 20 N -0.629 5.629 21 Si 0.774 3.226 22 H -0.227 1.227 23 H -0.211 1.211 24 H -0.173 1.173 25 C -0.201 4.201 26 C 0.351 3.649 27 O -0.406 6.406 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.147 0.853 31 H 0.334 0.666 32 H 0.203 0.797 33 H 0.241 0.759 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.860 4.206 -11.243 22.356 hybrid contribution -0.418 0.671 0.734 1.079 sum -19.278 4.877 -10.509 22.491 Atomic orbital electron populations 1.22507 0.73623 1.06806 1.05858 1.46436 1.12417 1.04579 1.60554 1.20408 0.84584 0.82373 0.79884 1.84188 1.38786 1.14453 1.85367 1.68511 1.01412 1.30666 1.32808 1.23289 1.00936 0.85314 0.78888 1.21360 0.93470 0.95753 1.28781 1.17446 0.82008 0.87951 0.76008 1.90799 1.71346 1.31378 1.50920 1.45665 1.05379 1.10150 1.74495 1.21837 0.92268 0.85888 0.97683 0.89058 1.23933 0.92674 1.03573 0.98911 1.21452 0.96549 0.85332 0.92822 0.91381 1.42623 1.06441 1.18299 1.70318 1.19081 0.88260 1.02448 1.26164 0.91899 1.25398 1.00294 0.98252 1.00819 1.69861 1.30600 1.17183 1.45223 0.85588 0.81268 0.77452 0.78277 1.22736 1.21090 1.17280 1.23856 0.97886 1.01121 0.97248 1.16743 0.87671 0.82467 0.77993 1.90959 1.70401 1.28112 1.51129 0.88849 0.89289 0.85254 0.66550 0.79723 0.75889 0.86059 0.91006 0.80075 0.93315 0.93966 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.16 127.77 1.30 1.97 16 2 N -0.51 -10.54 2.99 -789.40 -2.36 -12.91 16 3 C 0.63 9.87 8.60 179.67 1.54 11.41 16 4 O -0.43 -2.30 12.18 -79.56 -0.97 -3.27 16 5 N -0.59 -11.80 10.31 -311.73 -3.21 -15.02 16 6 C 0.26 6.65 10.76 84.87 0.91 7.56 16 7 C -0.38 -12.08 5.93 -19.74 -0.12 -12.19 16 8 C 0.58 21.37 7.73 86.51 0.67 22.03 16 9 O -0.56 -25.46 15.44 15.87 0.25 -25.21 16 10 N -0.70 -22.79 4.25 -443.81 -1.88 -24.67 16 11 C 0.13 3.94 3.96 45.52 0.18 4.12 16 12 H 0.09 2.70 8.12 -2.39 -0.02 2.68 16 13 C -0.15 -4.30 7.57 31.12 0.24 -4.06 16 14 C 0.15 5.36 4.56 45.52 0.21 5.57 16 15 H 0.07 2.51 8.11 -2.39 -0.02 2.50 16 16 N -0.73 -32.49 4.82 -320.44 -1.54 -34.03 16 17 C -0.23 -12.37 10.45 84.04 0.88 -11.49 16 18 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 19 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 20 N -0.98 -60.30 13.97 21.65 0.30 -60.00 16 21 Si 0.95 43.47 27.97 68.60 1.92 45.39 16 22 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.25 -9.75 6.20 99.48 0.62 -9.14 16 25 C -0.16 -5.32 7.62 31.12 0.24 -5.08 16 26 C 0.55 17.39 7.47 85.18 0.64 18.03 16 27 O -0.53 -20.97 15.10 15.38 0.23 -20.74 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.40 7.45 -2.38 -0.02 1.38 16 30 H 0.13 0.75 7.33 -2.39 -0.02 0.74 16 31 H 0.47 -1.76 9.08 -74.06 -0.67 -2.43 16 32 H 0.19 4.27 6.49 -2.91 -0.02 4.25 16 33 H 0.40 12.11 5.98 -92.71 -0.55 11.55 16 34 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 36 H 0.36 15.70 4.12 -92.70 -0.38 15.32 16 37 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -84.98 331.52 -0.69 -85.67 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.56 Total: 29.58 kcal Atomic # 6 Polarization: 28.05 SS G_CDS: 7.15 Total: 35.20 kcal Atomic # 7 Polarization: -137.92 SS G_CDS: -8.70 Total: -146.62 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -0.49 Total: -49.21 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.92 Total: 45.39 kcal Total: -84.98 -0.69 -85.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022528990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.188 kcal (2) G-P(sol) polarization free energy of solvation -84.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds