Wall clock time and date at job start Tue Mar 31 2020 04:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30645 * 128.64353 * 2 1 4 4 O 1.20836 * 109.61969 * 180.29904 * 3 2 1 5 5 N 1.20906 * 115.90621 * 359.69171 * 4 3 2 6 6 C 1.31601 * 109.18263 * 0.02562 * 5 4 3 7 7 C 1.48271 * 128.71620 * 179.97438 * 6 5 4 8 8 O 1.21499 * 120.00275 * 185.80566 * 7 6 5 9 9 N 1.34784 * 119.99866 * 5.80922 * 7 6 5 10 10 C 1.47126 * 121.06070 * 175.36291 * 9 7 6 11 11 C 1.53221 * 108.72481 * 232.31583 * 10 9 7 12 12 O 1.43128 * 109.35342 * 305.80315 * 11 10 9 13 13 C 1.42353 * 113.99107 * 59.77895 * 12 11 10 14 14 C 1.52937 * 114.29610 * 74.95943 * 13 12 11 15 15 N 1.47166 * 87.84190 * 88.27234 * 14 13 12 16 16 C 1.36933 * 135.99924 * 206.64615 * 15 14 13 17 17 H 1.08004 * 119.99612 * 6.34509 * 16 15 14 18 18 C 1.38812 * 120.00114 * 186.35334 * 16 15 14 19 19 N 1.31626 * 119.99640 * 195.01512 * 18 16 15 20 20 Si 1.86799 * 120.00236 * 15.01692 * 18 16 15 21 21 H 1.48502 * 109.47062 * 270.00268 * 20 18 16 22 22 H 1.48502 * 109.46896 * 29.99963 * 20 18 16 23 23 H 1.48493 * 109.47154 * 150.00104 * 20 18 16 24 24 C 1.47178 * 88.00556 * 26.90025 * 15 14 13 25 25 C 1.47362 * 121.05827 * 355.38310 * 9 7 6 26 26 H 1.09005 * 109.47539 * 270.16184 * 1 2 3 27 27 H 1.09005 * 109.47148 * 30.16040 * 1 2 3 28 28 H 1.09001 * 109.47548 * 150.16069 * 1 2 3 29 29 H 1.09006 * 109.59126 * 112.54275 * 10 9 7 30 30 H 1.08998 * 109.59790 * 352.09068 * 10 9 7 31 31 H 1.09007 * 109.49180 * 185.84038 * 11 10 9 32 32 H 1.08996 * 109.49292 * 65.76671 * 11 10 9 33 33 H 1.08997 * 113.48574 * 333.52785 * 14 13 12 34 34 H 1.08993 * 113.54458 * 203.02538 * 14 13 12 35 35 H 0.96993 * 120.00238 * 354.95274 * 19 18 16 36 36 H 1.09000 * 113.49032 * 87.84031 * 24 15 14 37 37 H 1.09005 * 113.49105 * 218.34819 * 24 15 14 38 38 H 1.09003 * 109.74341 * 12.09252 * 25 9 7 39 39 H 1.08996 * 109.74321 * 251.36688 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6265 -0.0059 5 7 3.6101 -0.5738 -0.0046 6 6 2.4279 -1.1521 0.0028 7 6 2.1032 -2.5988 0.0066 8 8 0.9482 -2.9625 -0.0929 9 7 3.0894 -3.5105 0.1205 10 6 2.7870 -4.9463 0.2285 11 6 3.5094 -5.5101 1.4565 12 8 4.9040 -5.1996 1.3705 13 6 5.1841 -3.8050 1.3147 14 6 5.0280 -3.0779 2.6510 15 7 6.4327 -3.4132 2.9341 16 6 7.1926 -3.6049 4.0570 17 1 6.7253 -3.6108 5.0307 18 6 8.5635 -3.7913 3.9438 19 7 9.2497 -4.2639 4.9629 20 14 9.4345 -3.3716 2.3455 21 1 9.4498 -4.5650 1.4620 22 1 8.7167 -2.2626 1.6671 23 1 10.8292 -2.9534 2.6369 24 6 6.6641 -3.4459 1.4810 25 6 4.5048 -3.1008 0.1413 26 1 -0.3634 0.0029 1.0277 27 1 -0.3634 0.8886 -0.5163 28 1 -0.3634 -0.8914 -0.5113 29 1 3.1332 -5.4611 -0.6678 30 1 1.7119 -5.0860 0.3407 31 1 3.3791 -6.5918 1.4904 32 1 3.0927 -5.0647 2.3599 33 1 4.3216 -3.5590 3.3274 34 1 4.8494 -2.0078 2.5462 35 1 8.8115 -4.4128 5.8153 36 1 6.9254 -2.4747 1.0607 37 1 7.3432 -4.2385 1.1669 38 1 4.5736 -2.0206 0.2700 39 1 4.9862 -3.3926 -0.7921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053550408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:59 Heat of formation + Delta-G solvation = 105.354732 kcal Electronic energy + Delta-G solvation = -26562.965722 eV Core-core repulsion = 22706.729839 eV Total energy + Delta-G solvation = -3856.235883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.01821 -42.05836 -40.51805 -38.06534 -36.51720 -36.26286 -35.52961 -34.61233 -31.94500 -30.60505 -29.77580 -27.92274 -27.27951 -26.82456 -24.46490 -23.82361 -23.20596 -21.51582 -20.65798 -20.19377 -19.67371 -19.03551 -18.50209 -17.89801 -17.50986 -17.05981 -16.35461 -16.24794 -15.76316 -15.51155 -15.36989 -15.27925 -15.20612 -14.79875 -14.51328 -14.44281 -14.25649 -13.68431 -13.49881 -13.02487 -12.94843 -12.88116 -12.54024 -12.43905 -12.28399 -12.23163 -11.85362 -11.62885 -11.46278 -11.43526 -11.31550 -10.89500 -10.87672 -9.81964 -9.29277 -8.65361 -5.49053 -0.47915 0.19980 1.22164 1.40933 1.52885 1.63508 1.67480 2.10625 2.26964 2.48350 2.55541 2.57320 2.86279 3.13907 3.21280 3.37260 3.54537 3.58549 3.80214 4.03783 4.10263 4.12405 4.32580 4.42064 4.47046 4.51298 4.56008 4.58483 4.63746 4.64602 4.71963 4.80195 4.89465 5.04831 5.08863 5.12628 5.83944 5.91181 6.17422 6.54566 6.65501 7.29322 7.29890 8.20791 8.86644 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.004784 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.184392 B = 5851.551912 C = 6762.684659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.069 3.931 3 N -0.362 5.362 4 O 0.339 5.661 5 N -0.320 5.320 6 C -0.054 4.054 7 C 0.611 3.389 8 O -0.527 6.527 9 N -0.594 5.594 10 C 0.085 3.915 11 C 0.042 3.958 12 O -0.361 6.361 13 C 0.082 3.918 14 C 0.101 3.899 15 N -0.645 5.645 16 C -0.294 4.294 17 H 0.044 0.956 18 C -0.080 4.080 19 N -0.966 5.966 20 Si 1.098 2.902 21 H -0.276 1.276 22 H -0.243 1.243 23 H -0.300 1.300 24 C 0.112 3.888 25 C 0.081 3.919 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.044 0.956 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.130 0.870 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.354 5.821 -16.732 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 N -0.089 5.089 4 O 0.116 5.884 5 N -0.042 5.042 6 C -0.218 4.218 7 C 0.396 3.604 8 O -0.403 6.403 9 N -0.326 5.326 10 C -0.036 4.036 11 C -0.035 4.035 12 O -0.279 6.279 13 C 0.040 3.960 14 C -0.025 4.025 15 N -0.373 5.373 16 C -0.422 4.422 17 H 0.062 0.938 18 C -0.272 4.272 19 N -0.611 5.611 20 Si 0.922 3.078 21 H -0.203 1.203 22 H -0.167 1.167 23 H -0.228 1.228 24 C -0.013 4.013 25 C -0.043 4.043 26 H 0.124 0.876 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.153 0.847 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.147 0.853 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.320 6.091 -17.319 25.239 hybrid contribution -1.847 -0.456 1.929 2.710 sum -19.167 5.635 -15.389 25.218 Atomic orbital electron populations 1.20537 0.80698 1.06253 1.05817 1.26701 1.01477 0.84146 0.97319 1.75089 0.91090 1.24171 1.18576 1.85102 1.23621 1.16652 1.63033 1.75173 1.22859 0.93070 1.13087 1.26066 0.88657 0.98255 1.08858 1.16525 0.84879 0.81770 0.77186 1.90784 1.19051 1.79576 1.50895 1.48075 1.06407 1.07730 1.70413 1.22537 1.03162 0.77879 1.00004 1.23221 0.80613 1.02992 0.96638 1.87958 1.25144 1.20761 1.94046 1.22735 0.96678 0.82950 0.93624 1.23000 0.87170 0.97558 0.94762 1.45999 1.07955 1.82127 1.01186 1.19900 0.90901 1.46461 0.84888 0.93833 1.27157 0.93724 0.98433 1.07868 1.71019 1.39620 1.47336 1.03146 0.83414 0.74600 0.78141 0.71651 1.20267 1.16749 1.22823 1.22939 0.93811 1.00126 0.84452 1.22908 0.79348 1.02918 0.99080 0.87602 0.87334 0.87953 0.87753 0.86557 0.84665 0.93790 0.94572 0.92799 0.94563 0.89446 0.92462 0.85324 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.25 71.23 0.73 -0.17 16 2 C 0.07 1.32 7.79 45.18 0.35 1.67 16 3 N -0.36 -7.56 12.22 -51.81 -0.63 -8.19 16 4 O 0.34 7.46 11.65 140.85 1.64 9.10 16 5 N -0.32 -7.38 8.91 -52.04 -0.46 -7.84 16 6 C -0.05 -1.20 7.26 44.29 0.32 -0.88 16 7 C 0.61 14.39 7.73 86.91 0.67 15.06 16 8 O -0.53 -13.27 15.41 -3.71 -0.06 -13.32 16 9 N -0.59 -13.64 3.03 -820.93 -2.49 -16.12 16 10 C 0.09 1.65 6.58 86.33 0.57 2.22 16 11 C 0.04 1.01 6.90 72.06 0.50 1.51 16 12 O -0.36 -12.21 10.55 -148.98 -1.57 -13.78 16 13 C 0.08 2.74 1.29 -10.82 -0.01 2.73 16 14 C 0.10 4.00 7.90 83.33 0.66 4.66 16 15 N -0.64 -31.92 3.64 -738.63 -2.69 -34.60 16 16 C -0.29 -17.64 11.03 84.03 0.93 -16.71 16 17 H 0.04 2.85 8.06 -2.91 -0.02 2.82 16 18 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 19 N -0.97 -63.61 13.70 21.65 0.30 -63.32 16 20 Si 1.10 52.84 25.48 68.60 1.75 54.59 16 21 H -0.28 -12.54 6.97 99.48 0.69 -11.85 16 22 H -0.24 -10.07 5.60 99.48 0.56 -9.51 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 24 C 0.11 4.45 5.04 83.42 0.42 4.87 16 25 C 0.08 2.02 5.70 86.14 0.49 2.51 16 26 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.11 0.86 8.14 -2.38 -0.02 0.85 16 28 H 0.10 1.27 7.24 -2.39 -0.02 1.25 16 29 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.12 2.02 7.09 -2.39 -0.02 2.00 16 31 H 0.14 2.50 8.14 -2.38 -0.02 2.49 16 32 H 0.04 1.17 7.30 -2.39 -0.02 1.15 16 33 H 0.04 1.48 7.36 -2.39 -0.02 1.46 16 34 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 35 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 36 H 0.09 3.09 6.99 -2.39 -0.02 3.08 16 37 H 0.06 2.39 6.11 -2.38 -0.01 2.38 16 38 H 0.13 3.24 3.86 -12.54 -0.05 3.19 16 39 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -75.49 318.63 2.74 -72.75 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.86 Total: 7.69 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.09 Total: 13.05 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -5.97 Total: -130.07 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.01 Total: -18.01 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 1.75 Total: 54.59 kcal Total: -75.49 2.74 -72.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053550408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.104 kcal (2) G-P(sol) polarization free energy of solvation -75.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds