Wall clock time and date at job start Tue Mar 31 2020 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35512 * 117.00333 * 2 1 4 4 C 1.39646 * 120.49462 * 180.30104 * 3 2 1 5 5 C 1.39146 * 118.20281 * 180.25753 * 4 3 2 6 6 C 1.48444 * 120.51312 * 179.72001 * 5 4 3 7 7 O 1.21479 * 120.00456 * 359.72710 * 6 5 4 8 8 N 1.34781 * 119.99979 * 179.72138 * 6 5 4 9 9 C 1.46497 * 120.00253 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.88301 * 37.42742 * 9 8 6 11 11 C 1.54913 * 111.00383 * 273.55391 * 9 8 6 12 12 N 1.47433 * 104.82906 * 204.87636 * 11 9 8 13 13 C 1.36931 * 125.64416 * 204.09110 * 12 11 9 14 14 H 1.07998 * 120.00810 * 6.64741 * 13 12 11 15 15 C 1.38817 * 119.99862 * 186.65062 * 13 12 11 16 16 N 1.31625 * 119.99829 * 7.37839 * 15 13 12 17 17 Si 1.86794 * 120.00155 * 187.10331 * 15 13 12 18 18 H 1.48491 * 109.47353 * 265.29106 * 17 15 13 19 19 H 1.48497 * 109.47341 * 25.29482 * 17 15 13 20 20 H 1.48501 * 109.46969 * 145.29043 * 17 15 13 21 21 C 1.47015 * 108.70348 * 24.35675 * 12 11 9 22 22 C 1.54335 * 107.26750 * 358.58073 * 21 12 11 23 23 H 1.09009 * 110.51410 * 96.45397 * 22 21 12 24 24 O 1.42900 * 111.00588 * 219.60292 * 22 21 12 25 25 N 1.33279 * 118.96472 * 359.45228 * 5 4 3 26 26 C 1.31523 * 120.88925 * 0.27135 * 25 5 4 27 27 N 1.31891 * 121.98809 * 0.02562 * 26 25 5 28 28 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46712 * 299.99528 * 1 2 3 30 30 H 1.08993 * 109.47477 * 59.99641 * 1 2 3 31 31 H 1.08000 * 120.89336 * 0.02562 * 4 3 2 32 32 H 0.96996 * 119.99559 * 0.02562 * 8 6 5 33 33 H 1.08996 * 110.36780 * 86.04316 * 11 9 8 34 34 H 1.09001 * 110.36745 * 323.70943 * 11 9 8 35 35 H 0.96994 * 119.99763 * 179.73061 * 16 15 13 36 36 H 1.08999 * 109.88388 * 118.12843 * 21 12 11 37 37 H 1.08998 * 109.88395 * 239.29739 * 21 12 11 38 38 H 0.96701 * 113.99883 * 293.78476 * 24 22 21 39 39 H 1.08000 * 119.00321 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4381 1.2924 -0.0063 5 6 4.0198 2.5564 -0.0005 6 6 5.4967 2.7065 -0.0006 7 8 6.2074 1.7212 -0.0007 8 7 6.0492 3.9358 -0.0006 9 6 7.5066 4.0840 -0.0012 10 1 7.9747 3.3188 -0.6205 11 6 8.0687 4.0507 1.4420 12 7 9.3429 4.7886 1.3678 13 6 10.4000 4.6439 2.2260 14 1 10.3844 3.8669 2.9760 15 6 11.4919 5.4959 2.1322 16 7 11.4513 6.5306 1.3196 17 14 13.0158 5.1786 3.1649 18 1 12.9416 5.9766 4.4149 19 1 13.0926 3.7347 3.5032 20 1 14.2246 5.5721 2.3973 21 6 9.2881 5.7100 0.2235 22 6 7.9219 5.5052 -0.4645 23 1 7.2043 6.2489 -0.1178 24 8 8.0520 5.5555 -1.8867 25 7 3.2304 3.6303 -0.0004 26 6 1.9211 3.5057 -0.0003 27 7 1.3314 2.3260 0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 4.0480 0.4011 -0.0117 32 1 5.4817 4.7225 -0.0002 33 1 8.2439 3.0221 1.7572 34 1 7.3823 4.5471 2.1280 35 1 12.2128 7.1281 1.2569 36 1 9.3797 6.7389 0.5714 37 1 10.0915 5.4802 -0.4763 38 1 8.3101 6.4229 -2.2276 39 1 1.3103 4.3965 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077006357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:42 Heat of formation + Delta-G solvation = -31.698104 kcal Electronic energy + Delta-G solvation = -24848.688788 eV Core-core repulsion = 20986.509848 eV Total energy + Delta-G solvation = -3862.178940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64741 -39.75447 -38.75007 -37.81418 -35.09945 -34.26743 -33.58054 -32.14058 -31.67134 -28.60554 -28.02830 -27.15928 -25.27831 -24.58959 -24.10318 -21.38924 -20.55510 -20.22427 -19.03961 -18.58329 -17.16887 -16.83833 -16.65025 -16.33584 -15.91291 -15.73734 -15.36075 -15.13965 -14.76506 -14.54634 -14.20355 -13.98084 -13.94066 -13.18848 -12.71189 -12.51783 -12.48554 -12.10500 -12.06589 -11.57619 -11.25705 -11.20427 -10.94500 -10.81707 -10.68421 -10.48234 -10.17097 -9.93932 -9.81971 -9.75860 -9.53761 -9.36641 -8.92022 -8.65376 -6.91023 -5.76482 -3.12625 0.22576 0.66541 2.35261 2.67703 3.04516 3.39180 3.44977 3.47473 3.57308 3.63956 3.71891 4.40382 4.46950 4.60418 4.64366 4.79384 4.85694 4.95018 5.13669 5.16896 5.25498 5.42392 5.56044 5.63196 5.72334 5.80613 6.04118 6.10122 6.32792 6.44472 6.59055 6.66269 6.82915 7.29414 7.43941 7.49436 7.66988 7.72287 8.08832 8.14466 8.19800 9.13644 9.74375 10.37425 11.34140 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.002802 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.927399 B = 9989.398778 C =10528.586371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.297 6.297 3 C 0.364 3.636 4 C -0.184 4.184 5 C 0.165 3.835 6 C 0.568 3.432 7 O -0.519 6.519 8 N -0.687 5.687 9 C 0.136 3.864 10 H 0.106 0.894 11 C 0.130 3.870 12 N -0.598 5.598 13 C -0.228 4.228 14 H 0.081 0.919 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.915 3.085 18 H -0.289 1.289 19 H -0.280 1.280 20 H -0.290 1.290 21 C 0.149 3.851 22 C 0.071 3.929 23 H 0.061 0.939 24 O -0.564 6.564 25 N -0.518 5.518 26 C 0.335 3.665 27 N -0.567 5.567 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.167 0.833 32 H 0.410 0.590 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.253 0.747 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.378 0.622 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.200 -5.512 -4.692 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.201 6.201 3 C 0.175 3.825 4 C -0.208 4.208 5 C 0.021 3.979 6 C 0.351 3.649 7 O -0.393 6.393 8 N -0.337 5.337 9 C 0.031 3.969 10 H 0.123 0.877 11 C 0.002 3.998 12 N -0.326 5.326 13 C -0.356 4.356 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.570 5.570 17 Si 0.745 3.255 18 H -0.216 1.216 19 H -0.205 1.205 20 H -0.216 1.216 21 C 0.023 3.977 22 C 0.011 3.989 23 H 0.079 0.921 24 O -0.369 6.369 25 N -0.239 5.239 26 C 0.047 3.953 27 N -0.298 5.298 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.185 0.815 32 H 0.246 0.754 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.225 0.775 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.035 -6.279 -4.608 23.371 hybrid contribution 0.775 0.317 0.489 0.970 sum -21.260 -5.962 -4.118 22.461 Atomic orbital electron populations 1.23008 0.76269 1.03647 1.02900 1.86272 1.23656 1.23595 1.86541 1.20035 0.89228 0.85176 0.88045 1.21941 0.92686 1.00759 1.05457 1.21523 0.95144 0.88583 0.92645 1.17639 0.85048 0.84306 0.77952 1.90833 1.61181 1.37991 1.49305 1.45758 1.08204 1.07707 1.72007 1.22374 0.77743 0.97843 0.98941 0.87651 1.21852 0.88774 0.96995 0.92159 1.44237 1.12360 1.44577 1.31408 1.19083 0.93935 1.12325 1.10275 0.90152 1.24822 0.98913 0.96893 0.99773 1.69910 1.30603 1.15657 1.40802 0.86055 0.82487 0.77744 0.79227 1.21590 1.20515 1.21582 1.21879 0.90583 0.96170 0.89028 1.23434 0.99399 0.95048 0.81047 0.92093 1.86456 1.92252 1.37428 1.20731 1.68379 1.06629 1.33003 1.15896 1.24706 0.88020 0.93833 0.88742 1.68049 1.42024 0.99340 1.20431 0.88002 0.91791 0.91806 0.81534 0.75419 0.92901 0.95701 0.93659 0.91488 0.93612 0.77528 0.77663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.90 10.49 -18.23 -0.19 -3.10 16 3 C 0.36 3.99 7.54 -16.68 -0.13 3.87 16 4 C -0.18 -2.24 9.68 -38.72 -0.37 -2.61 16 5 C 0.17 2.19 6.79 -82.70 -0.56 1.62 16 6 C 0.57 9.07 7.83 -12.05 -0.09 8.97 16 7 O -0.52 -9.81 16.16 5.38 0.09 -9.73 16 8 N -0.69 -10.71 5.22 -52.48 -0.27 -10.98 16 9 C 0.14 2.55 3.04 -65.78 -0.20 2.35 16 10 H 0.11 2.22 7.73 -51.93 -0.40 1.82 16 11 C 0.13 2.78 6.93 -2.52 -0.02 2.76 16 12 N -0.60 -15.27 3.39 -170.07 -0.58 -15.84 16 13 C -0.23 -6.37 10.26 -15.06 -0.15 -6.52 16 14 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 15 C -0.01 -0.22 5.45 -17.43 -0.09 -0.31 16 16 N -0.92 -26.57 10.48 55.49 0.58 -25.99 16 17 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C 0.15 3.50 5.21 -3.06 -0.02 3.48 16 22 C 0.07 1.29 3.94 -24.89 -0.10 1.20 16 23 H 0.06 0.99 8.00 -51.92 -0.42 0.57 16 24 O -0.56 -9.55 13.40 -35.23 -0.47 -10.02 16 25 N -0.52 -5.95 9.70 -11.21 -0.11 -6.05 16 26 C 0.34 3.09 12.27 -92.30 -1.13 1.96 16 27 N -0.57 -5.71 9.36 -14.64 -0.14 -5.85 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.38 8.12 -51.92 -0.42 -0.04 16 30 H 0.06 0.38 8.12 -51.93 -0.42 -0.05 16 31 H 0.17 1.97 7.73 -52.49 -0.41 1.56 16 32 H 0.41 5.54 7.90 -40.82 -0.32 5.22 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.71 6.99 -51.93 -0.36 1.35 16 37 H 0.05 1.20 7.83 -51.93 -0.41 0.79 16 38 H 0.38 4.81 9.12 45.56 0.42 5.22 16 39 H 0.21 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 338.60 15.07 5.10 5.10 Total: -1.00 -33.54 338.60 -6.81 -40.35 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.98 Total: 7.03 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: -1.82 Total: 18.05 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -0.52 Total: -64.72 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.58 Total: -22.85 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.54 -6.81 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077006357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.653 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds