Wall clock time and date at job start Tue Mar 31 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35512 * 117.00333 * 2 1 4 4 C 1.39646 * 120.49462 * 180.30104 * 3 2 1 5 5 C 1.39146 * 118.20281 * 180.25753 * 4 3 2 6 6 C 1.48444 * 120.51312 * 179.72001 * 5 4 3 7 7 O 1.21479 * 120.00456 * 359.72710 * 6 5 4 8 8 N 1.34781 * 119.99979 * 179.72138 * 6 5 4 9 9 C 1.46497 * 120.00253 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.88301 * 37.42742 * 9 8 6 11 11 C 1.54913 * 111.00383 * 273.55391 * 9 8 6 12 12 N 1.47433 * 104.82906 * 204.87636 * 11 9 8 13 13 C 1.36931 * 125.64416 * 204.09110 * 12 11 9 14 14 H 1.07998 * 120.00810 * 6.64741 * 13 12 11 15 15 C 1.38817 * 119.99862 * 186.65062 * 13 12 11 16 16 N 1.31625 * 119.99829 * 7.37839 * 15 13 12 17 17 Si 1.86794 * 120.00155 * 187.10331 * 15 13 12 18 18 H 1.48491 * 109.47353 * 265.29106 * 17 15 13 19 19 H 1.48497 * 109.47341 * 25.29482 * 17 15 13 20 20 H 1.48501 * 109.46969 * 145.29043 * 17 15 13 21 21 C 1.47015 * 108.70348 * 24.35675 * 12 11 9 22 22 C 1.54335 * 107.26750 * 358.58073 * 21 12 11 23 23 H 1.09009 * 110.51410 * 96.45397 * 22 21 12 24 24 O 1.42900 * 111.00588 * 219.60292 * 22 21 12 25 25 N 1.33279 * 118.96472 * 359.45228 * 5 4 3 26 26 C 1.31523 * 120.88925 * 0.27135 * 25 5 4 27 27 N 1.31891 * 121.98809 * 0.02562 * 26 25 5 28 28 H 1.08999 * 109.47412 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46712 * 299.99528 * 1 2 3 30 30 H 1.08993 * 109.47477 * 59.99641 * 1 2 3 31 31 H 1.08000 * 120.89336 * 0.02562 * 4 3 2 32 32 H 0.96996 * 119.99559 * 0.02562 * 8 6 5 33 33 H 1.08996 * 110.36780 * 86.04316 * 11 9 8 34 34 H 1.09001 * 110.36745 * 323.70943 * 11 9 8 35 35 H 0.96994 * 119.99763 * 179.73061 * 16 15 13 36 36 H 1.08999 * 109.88388 * 118.12843 * 21 12 11 37 37 H 1.08998 * 109.88395 * 239.29739 * 21 12 11 38 38 H 0.96701 * 113.99883 * 293.78476 * 24 22 21 39 39 H 1.08000 * 119.00321 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4381 1.2924 -0.0063 5 6 4.0198 2.5564 -0.0005 6 6 5.4967 2.7065 -0.0006 7 8 6.2074 1.7212 -0.0007 8 7 6.0492 3.9358 -0.0006 9 6 7.5066 4.0840 -0.0012 10 1 7.9747 3.3188 -0.6205 11 6 8.0687 4.0507 1.4420 12 7 9.3429 4.7886 1.3678 13 6 10.4000 4.6439 2.2260 14 1 10.3844 3.8669 2.9760 15 6 11.4919 5.4959 2.1322 16 7 11.4513 6.5306 1.3196 17 14 13.0158 5.1786 3.1649 18 1 12.9416 5.9766 4.4149 19 1 13.0926 3.7347 3.5032 20 1 14.2246 5.5721 2.3973 21 6 9.2881 5.7100 0.2235 22 6 7.9219 5.5052 -0.4645 23 1 7.2043 6.2489 -0.1178 24 8 8.0520 5.5555 -1.8867 25 7 3.2304 3.6303 -0.0004 26 6 1.9211 3.5057 -0.0003 27 7 1.3314 2.3260 0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 4.0480 0.4011 -0.0117 32 1 5.4817 4.7225 -0.0002 33 1 8.2439 3.0221 1.7572 34 1 7.3823 4.5471 2.1280 35 1 12.2128 7.1281 1.2569 36 1 9.3797 6.7389 0.5714 37 1 10.0915 5.4802 -0.4763 38 1 8.3101 6.4229 -2.2276 39 1 1.3103 4.3965 0.0003 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077006357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:41 Heat of formation + Delta-G solvation = -60.345065 kcal Electronic energy + Delta-G solvation = -24849.931013 eV Core-core repulsion = 20986.509848 eV Total energy + Delta-G solvation = -3863.421165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.51502 -41.03224 -39.69929 -39.23263 -36.68688 -35.75231 -34.57868 -33.54622 -32.98212 -30.32329 -29.04396 -28.52434 -26.74264 -25.58747 -25.38007 -22.72495 -22.19013 -21.77470 -20.09117 -19.45154 -19.02674 -18.26933 -17.54826 -17.39390 -17.28839 -16.71346 -16.59327 -16.32604 -16.02817 -15.82661 -15.59388 -15.17011 -15.05450 -14.71586 -14.49785 -14.24113 -13.79560 -13.26701 -13.11015 -12.99014 -12.81194 -12.73238 -12.70334 -12.11492 -12.02488 -11.89602 -11.72792 -11.55883 -11.51248 -11.00205 -10.77159 -10.65743 -10.37314 -10.28397 -8.96555 -7.88390 -5.27389 -0.72990 -0.14712 1.45369 1.48010 1.48576 1.54135 1.57825 1.96947 2.46809 2.65756 2.74392 2.94985 3.10820 3.30633 3.50390 3.51131 3.74437 3.83770 4.00872 4.02789 4.17983 4.40246 4.40684 4.41970 4.45968 4.52992 4.71546 4.80886 4.90681 5.00130 5.29249 5.35808 5.46156 5.52382 5.64211 5.92497 6.13662 6.29459 6.78805 6.86453 6.94226 7.04149 7.68313 8.31055 9.20085 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.002802 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.927399 B = 9989.398778 C =10528.586371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.366 3.634 4 C -0.194 4.194 5 C 0.157 3.843 6 C 0.569 3.431 7 O -0.555 6.555 8 N -0.675 5.675 9 C 0.151 3.849 10 H 0.081 0.919 11 C 0.131 3.869 12 N -0.620 5.620 13 C -0.248 4.248 14 H 0.080 0.920 15 C -0.060 4.060 16 N -0.945 5.945 17 Si 0.980 3.020 18 H -0.283 1.283 19 H -0.273 1.273 20 H -0.291 1.291 21 C 0.157 3.843 22 C 0.094 3.906 23 H 0.095 0.905 24 O -0.567 6.567 25 N -0.524 5.524 26 C 0.341 3.659 27 N -0.563 5.563 28 H 0.127 0.873 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.162 0.838 32 H 0.423 0.577 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.250 0.750 36 H 0.044 0.956 37 H 0.009 0.991 38 H 0.398 0.602 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.619 -5.243 -4.666 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.177 3.823 4 C -0.218 4.218 5 C 0.013 3.987 6 C 0.353 3.647 7 O -0.432 6.432 8 N -0.326 5.326 9 C 0.045 3.955 10 H 0.099 0.901 11 C 0.004 3.996 12 N -0.347 5.347 13 C -0.377 4.377 14 H 0.098 0.902 15 C -0.254 4.254 16 N -0.593 5.593 17 Si 0.807 3.193 18 H -0.209 1.209 19 H -0.198 1.198 20 H -0.218 1.218 21 C 0.031 3.969 22 C 0.034 3.966 23 H 0.112 0.888 24 O -0.375 6.375 25 N -0.245 5.245 26 C 0.054 3.946 27 N -0.294 5.294 28 H 0.145 0.855 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.179 0.821 32 H 0.262 0.738 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.248 0.752 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -24.514 -5.998 -4.592 25.652 hybrid contribution 1.401 0.187 0.461 1.487 sum -23.113 -5.811 -4.131 24.188 Atomic orbital electron populations 1.23304 0.74267 1.05549 1.03239 1.86271 1.25625 1.23078 1.86065 1.20067 0.88890 0.85929 0.87464 1.21920 0.93536 1.00277 1.06114 1.21027 0.93557 0.89619 0.94497 1.18032 0.86333 0.83621 0.76708 1.90813 1.62508 1.39078 1.50751 1.45515 1.06740 1.08422 1.71944 1.21884 0.79509 0.97507 0.96633 0.90118 1.21916 0.87665 0.95804 0.94218 1.44496 1.13251 1.45417 1.31571 1.19413 0.95155 1.12350 1.10755 0.90226 1.25642 1.01611 0.96876 1.01235 1.70096 1.31023 1.16237 1.41992 0.85053 0.78655 0.77857 0.77698 1.20917 1.19767 1.21775 1.21699 0.92684 0.94464 0.88069 1.23103 0.96770 0.95314 0.81463 0.88772 1.86424 1.92151 1.39434 1.19527 1.68383 1.07545 1.32161 1.16449 1.25581 0.87466 0.94845 0.86679 1.68177 1.41698 0.99333 1.20196 0.85458 0.91442 0.91375 0.82078 0.73825 0.94251 0.94359 0.94053 0.93777 0.97245 0.75174 0.73496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 113.37 1.18 1.48 16 2 O -0.31 -5.50 10.49 -88.14 -0.92 -6.43 16 3 C 0.37 7.44 7.54 84.91 0.64 8.08 16 4 C -0.19 -4.59 9.68 22.83 0.22 -4.37 16 5 C 0.16 3.98 6.79 41.86 0.28 4.27 16 6 C 0.57 18.00 7.83 86.96 0.68 18.68 16 7 O -0.55 -21.44 16.16 -3.65 -0.06 -21.50 16 8 N -0.68 -20.35 5.22 -438.26 -2.29 -22.64 16 9 C 0.15 5.64 3.04 46.38 0.14 5.79 16 10 H 0.08 3.47 7.73 -2.39 -0.02 3.45 16 11 C 0.13 5.65 6.93 86.85 0.60 6.25 16 12 N -0.62 -32.31 3.39 -691.96 -2.35 -34.65 16 13 C -0.25 -14.12 10.26 84.04 0.86 -13.26 16 14 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 15 C -0.06 -3.41 5.45 84.86 0.46 -2.95 16 16 N -0.95 -55.65 10.48 21.65 0.23 -55.42 16 17 Si 0.98 45.88 29.56 68.60 2.03 47.91 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 21 C 0.16 7.50 5.21 86.73 0.45 7.96 16 22 C 0.09 3.34 3.94 31.79 0.13 3.47 16 23 H 0.09 2.80 8.00 -2.38 -0.02 2.78 16 24 O -0.57 -18.45 13.40 -148.98 -2.00 -20.44 16 25 N -0.52 -10.80 9.70 -189.36 -1.84 -12.63 16 26 C 0.34 5.20 12.27 180.94 2.22 7.42 16 27 N -0.56 -9.83 9.36 -313.00 -2.93 -12.76 16 28 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.64 8.12 -2.38 -0.02 0.62 16 30 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 31 H 0.16 3.89 7.73 -2.91 -0.02 3.87 16 32 H 0.42 10.51 7.90 -92.71 -0.73 9.78 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.04 2.30 6.99 -2.39 -0.02 2.28 16 37 H 0.01 0.51 7.83 -2.39 -0.02 0.49 16 38 H 0.40 9.42 9.12 -74.06 -0.68 8.74 16 39 H 0.25 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -74.12 338.60 -2.56 -76.68 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.30 Total: 19.08 kcal Atomic # 6 Polarization: 34.94 SS G_CDS: 7.87 Total: 42.81 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -9.18 Total: -138.11 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -2.98 Total: -48.37 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.12 -2.56 -76.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077006357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.334 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds