Wall clock time and date at job start Tue Mar 31 2020 04:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 119.89145 * 2 1 4 4 N 1.30435 * 121.81982 * 179.76067 * 3 2 1 5 5 C 1.34312 * 121.47787 * 0.48487 * 4 3 2 6 6 C 1.48573 * 120.20907 * 179.77737 * 5 4 3 7 7 O 1.21463 * 119.99591 * 179.72387 * 6 5 4 8 8 N 1.34770 * 119.99735 * 359.72266 * 6 5 4 9 9 C 1.46506 * 119.99803 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.91739 * 37.44409 * 9 8 6 11 11 C 1.54914 * 111.00108 * 273.54334 * 9 8 6 12 12 N 1.47424 * 104.83297 * 204.91524 * 11 9 8 13 13 C 1.36929 * 125.64830 * 204.09112 * 12 11 9 14 14 H 1.08004 * 120.00341 * 0.27955 * 13 12 11 15 15 C 1.38815 * 120.00031 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99916 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99958 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46986 * 90.00489 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00506 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00336 * 17 15 13 21 21 C 1.47020 * 108.70055 * 24.35724 * 12 11 9 22 22 C 1.54336 * 107.26729 * 358.58390 * 21 12 11 23 23 H 1.09005 * 110.66569 * 96.52538 * 22 21 12 24 24 O 1.42898 * 110.84754 * 219.67265 * 22 21 12 25 25 C 1.37924 * 119.58262 * 359.50297 * 5 4 3 26 26 C 1.34977 * 119.89305 * 179.97438 * 2 1 3 27 27 O 1.21906 * 120.71445 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46927 * 270.02690 * 1 2 3 29 29 H 1.09003 * 109.46805 * 30.01989 * 1 2 3 30 30 H 1.08998 * 109.47090 * 150.02384 * 1 2 3 31 31 H 1.08002 * 119.08955 * 359.97438 * 3 2 1 32 32 H 0.96999 * 120.00449 * 0.02562 * 8 6 5 33 33 H 1.09000 * 110.36358 * 86.07730 * 11 9 8 34 34 H 1.08995 * 110.36625 * 323.75628 * 11 9 8 35 35 H 0.97000 * 120.00284 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.88473 * 118.13169 * 21 12 11 37 37 H 1.09004 * 109.88289 * 239.29419 * 21 12 11 38 38 H 0.96698 * 114.00088 * 293.68783 * 24 22 21 39 39 H 1.08000 * 120.83493 * 180.27593 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2123 0.0046 5 6 4.1798 0.0911 -0.0001 6 6 5.6632 0.1740 0.0004 7 8 6.3282 -0.8424 0.0013 8 7 6.2709 1.3770 -0.0001 9 6 7.7336 1.4588 -0.0001 10 1 8.1673 0.6731 -0.6189 11 6 8.2930 1.4011 1.4433 12 7 9.5990 2.0810 1.3695 13 6 10.6481 1.8896 2.2283 14 1 10.5578 1.1861 3.0428 15 6 11.8300 2.5951 2.0484 16 7 11.9420 3.4483 1.0526 17 14 13.2615 2.3333 3.2197 18 1 14.1266 1.2404 2.7075 19 1 14.0534 3.5854 3.3210 20 1 12.7423 1.9661 4.5617 21 6 9.5861 3.0035 0.2247 22 6 8.2123 2.8598 -0.4639 23 1 7.5270 3.6348 -0.1205 24 8 8.3492 2.9023 -1.8857 25 6 3.5535 -1.1377 0.0004 26 6 2.1378 -1.1702 0.0005 27 8 1.5394 -2.2323 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.5801 2.0940 -0.0004 32 1 5.7398 2.1887 -0.0004 33 1 8.4217 0.3658 1.7592 34 1 7.6292 1.9279 2.1287 35 1 12.7677 3.9416 0.9271 36 1 9.7235 4.0274 0.5721 37 1 10.3788 2.7376 -0.4746 38 1 8.6462 3.7570 -2.2268 39 1 4.1283 -2.0520 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077161413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:40 Heat of formation + Delta-G solvation = -33.792395 kcal Electronic energy + Delta-G solvation = -25003.832880 eV Core-core repulsion = 21141.563124 eV Total energy + Delta-G solvation = -3862.269755 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.13276 -39.76881 -38.10209 -37.71728 -35.58825 -35.08436 -34.12757 -31.72014 -31.36427 -29.02935 -28.18703 -27.05501 -25.15658 -24.79293 -23.99791 -21.19990 -20.51457 -20.20364 -18.97617 -18.10871 -17.48301 -16.98317 -16.82966 -16.77272 -16.00808 -15.74041 -14.98722 -14.81016 -14.71778 -14.24404 -14.05672 -13.77705 -13.66239 -13.24559 -13.19675 -13.13298 -12.68860 -12.48536 -12.07565 -11.53866 -11.26470 -10.90907 -10.88815 -10.81325 -10.78835 -10.62283 -10.18407 -10.01597 -9.89804 -9.84374 -9.34483 -8.96420 -8.84314 -8.64033 -6.91870 -5.76430 -3.10866 -0.02703 1.28730 1.97457 2.62833 2.99651 3.39959 3.44948 3.46429 3.47448 3.54232 4.07867 4.13406 4.43127 4.52663 4.61318 4.68233 4.84980 5.01556 5.10789 5.17125 5.36105 5.43607 5.57399 5.64026 5.78804 5.84226 6.05941 6.09147 6.12861 6.46253 6.60427 6.83253 7.18803 7.32128 7.36146 7.46227 7.63437 7.73697 8.10825 8.16107 8.23043 9.15027 9.74957 10.37800 11.35414 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.028175 B = 0.002869 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.541918 B = 9756.649822 C =10210.292616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.526 5.526 3 C 0.373 3.627 4 N -0.524 5.524 5 C 0.135 3.865 6 C 0.566 3.434 7 O -0.519 6.519 8 N -0.689 5.689 9 C 0.136 3.864 10 H 0.105 0.895 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.228 4.228 14 H 0.081 0.919 15 C -0.008 4.008 16 N -0.924 5.924 17 Si 0.915 3.085 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.154 3.846 22 C 0.070 3.930 23 H 0.059 0.941 24 O -0.563 6.563 25 C -0.213 4.213 26 C 0.518 3.482 27 O -0.528 6.528 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.211 0.789 32 H 0.409 0.591 33 H 0.052 0.948 34 H 0.025 0.975 35 H 0.253 0.747 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.377 0.623 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.688 1.410 -4.196 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.244 5.244 3 C 0.088 3.912 4 N -0.247 5.247 5 C 0.013 3.987 6 C 0.349 3.651 7 O -0.394 6.394 8 N -0.339 5.339 9 C 0.031 3.969 10 H 0.123 0.877 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.356 4.356 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.572 5.572 17 Si 0.746 3.254 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.028 3.972 22 C 0.010 3.990 23 H 0.077 0.923 24 O -0.368 6.368 25 C -0.239 4.239 26 C 0.316 3.684 27 O -0.405 6.405 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.227 0.773 32 H 0.244 0.756 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.224 0.776 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -22.985 0.070 -4.107 23.349 hybrid contribution 0.278 0.326 0.560 0.705 sum -22.708 0.396 -3.547 22.986 Atomic orbital electron populations 1.22252 0.76230 1.05577 1.04522 1.46694 1.10862 1.08227 1.58649 1.24926 0.89051 0.89921 0.87288 1.68283 1.04143 1.29851 1.22424 1.21520 0.94880 0.89006 0.93251 1.17769 0.85110 0.84411 0.77835 1.90832 1.64384 1.34906 1.49268 1.45775 1.07824 1.08013 1.72307 1.22368 0.77499 0.98160 0.98892 0.87703 1.21852 0.88275 0.97357 0.92240 1.44242 1.10280 1.46283 1.31947 1.19095 0.90519 1.20063 1.05933 0.90108 1.24816 0.98005 0.98948 0.98609 1.69917 1.26431 1.29471 1.31359 0.86062 0.82218 0.77070 0.80077 1.21476 1.21648 1.20618 1.21834 0.90752 0.95034 0.89579 1.23439 0.99266 0.95163 0.81138 0.92269 1.86462 1.90570 1.39022 1.20759 1.23479 0.92790 1.00734 1.06904 1.17316 0.88705 0.83254 0.79088 1.90956 1.70327 1.28169 1.51027 0.89937 0.88870 0.88534 0.77302 0.75551 0.92939 0.95719 0.93643 0.93236 0.91987 0.77581 0.81134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.19 10.39 59.85 0.62 0.81 16 2 N -0.53 -3.77 2.97 -128.43 -0.38 -4.15 16 3 C 0.37 2.14 11.45 -90.67 -1.04 1.10 16 4 N -0.52 -5.02 9.64 -10.82 -0.10 -5.13 16 5 C 0.13 1.72 6.77 -82.63 -0.56 1.16 16 6 C 0.57 9.06 7.83 -12.00 -0.09 8.96 16 7 O -0.52 -10.10 16.12 5.40 0.09 -10.01 16 8 N -0.69 -10.59 5.22 -52.44 -0.27 -10.87 16 9 C 0.14 2.56 3.04 -65.78 -0.20 2.36 16 10 H 0.11 2.25 7.73 -51.93 -0.40 1.84 16 11 C 0.13 2.79 6.93 -2.53 -0.02 2.77 16 12 N -0.60 -15.31 3.39 -170.07 -0.58 -15.89 16 13 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 14 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 15 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.66 10.31 55.49 0.57 -26.09 16 17 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.15 3.60 5.16 -3.06 -0.02 3.59 16 22 C 0.07 1.27 3.94 -24.89 -0.10 1.17 16 23 H 0.06 0.94 7.99 -51.93 -0.42 0.52 16 24 O -0.56 -9.55 13.39 -35.23 -0.47 -10.02 16 25 C -0.21 -2.73 9.67 -38.41 -0.37 -3.10 16 26 C 0.52 6.10 7.47 -14.88 -0.11 5.99 16 27 O -0.53 -7.77 16.77 5.00 0.08 -7.69 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 -0.03 8.01 -51.93 -0.42 -0.44 16 30 H 0.10 0.47 7.44 -51.93 -0.39 0.08 16 31 H 0.21 0.06 8.01 -52.49 -0.42 -0.36 16 32 H 0.41 5.29 7.88 -40.82 -0.32 4.97 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 37 H 0.06 1.64 7.28 -51.93 -0.38 1.27 16 38 H 0.38 4.79 9.12 45.56 0.42 5.20 16 39 H 0.17 2.33 7.68 -52.49 -0.40 1.92 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -37.03 336.33 -7.09 -44.11 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -3.93 Total: 5.64 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: -2.13 Total: 17.97 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.76 Total: -62.12 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.30 Total: -27.72 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.03 -7.09 -44.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077161413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.321 kcal (2) G-P(sol) polarization free energy of solvation -37.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds