Wall clock time and date at job start Tue Mar 31 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35729 * 117.00424 * 2 1 4 4 C 1.39450 * 120.80684 * 359.71875 * 3 2 1 5 5 N 1.31949 * 119.08309 * 179.78560 * 4 3 2 6 6 C 1.32536 * 120.83878 * 0.47739 * 5 4 3 7 7 C 1.48296 * 119.11278 * 179.75029 * 6 5 4 8 8 O 1.21505 * 119.99882 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00213 * 0.02562 * 7 6 5 10 10 C 1.46499 * 119.99856 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.64257 * 36.69189 * 10 9 7 12 12 C 1.54316 * 110.72182 * 273.54621 * 10 9 7 13 13 N 1.47024 * 107.27353 * 219.44588 * 12 10 9 14 14 C 1.36934 * 125.64947 * 178.97965 * 13 12 10 15 15 H 1.08000 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99833 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00070 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99974 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47215 * 89.99276 * 18 16 14 20 20 H 1.48496 * 109.47127 * 209.99396 * 18 16 14 21 21 H 1.48507 * 109.46837 * 329.99282 * 18 16 14 22 22 C 1.47426 * 108.70180 * 358.94204 * 13 12 10 23 23 C 1.54915 * 104.83084 * 24.12663 * 22 13 12 24 24 H 1.08998 * 111.00188 * 81.06459 * 23 22 13 25 25 O 1.42898 * 111.00305 * 204.91799 * 23 22 13 26 26 N 1.32544 * 121.77522 * 359.78106 * 6 5 4 27 27 C 1.31953 * 120.83330 * 359.96766 * 26 6 5 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99831 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99953 * 1 2 3 31 31 H 1.08008 * 120.45421 * 0.02562 * 4 3 2 32 32 H 0.97001 * 119.99556 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.88527 * 338.86521 * 12 10 9 34 34 H 1.09005 * 109.88381 * 100.02989 * 12 10 9 35 35 H 0.97002 * 119.99685 * 180.02562 * 17 16 14 36 36 H 1.08996 * 110.36655 * 142.96779 * 22 13 12 37 37 H 1.09001 * 110.36454 * 265.18527 * 22 13 12 38 38 H 0.96707 * 113.99662 * 292.19545 * 25 23 22 39 39 H 1.08001 * 120.45457 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.3025 2.3895 -0.0059 5 7 1.9366 3.5465 -0.0014 6 6 3.2611 3.5954 -0.0009 7 6 3.9344 4.9167 -0.0014 8 8 5.1478 4.9803 -0.0014 9 7 3.2004 6.0471 -0.0018 10 6 3.8656 7.3524 -0.0018 11 1 4.7690 7.3233 -0.6109 12 6 4.1925 7.7985 1.4389 13 7 3.9312 9.2432 1.5184 14 6 4.0789 10.0206 2.6360 15 1 4.4138 9.5770 3.5620 16 6 3.7973 11.3786 2.5788 17 7 3.3888 11.9192 1.4504 18 14 3.9982 12.4391 4.1035 19 1 5.3801 12.9805 4.1514 20 1 3.0279 13.5622 4.0567 21 1 3.7462 11.6174 5.3146 22 6 3.4846 9.7163 0.1955 23 6 2.8997 8.4606 -0.4981 24 1 1.8802 8.2688 -0.1636 25 8 2.9546 8.5887 -1.9202 26 7 4.0001 2.4951 -0.0005 27 6 3.4366 1.3019 -0.0001 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 0.2229 2.3568 -0.0101 32 1 2.2317 5.9963 -0.0014 33 1 3.5549 7.2670 2.1453 34 1 5.2410 7.5988 1.6599 35 1 3.1924 12.8682 1.4105 36 1 2.7161 10.4813 0.3058 37 1 4.3289 10.1068 -0.3726 38 1 2.3676 9.2695 -2.2767 39 1 4.0447 0.4094 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077355817.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:44 Heat of formation + Delta-G solvation = -24.456044 kcal Electronic energy + Delta-G solvation = -24885.519889 eV Core-core repulsion = 21023.654988 eV Total energy + Delta-G solvation = -3861.864901 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.74905 -39.72625 -38.83558 -37.63628 -35.07131 -34.55238 -33.78228 -31.96244 -31.36102 -28.70054 -28.13978 -27.01591 -25.28533 -24.79937 -24.01238 -21.36885 -20.61208 -19.96844 -18.81829 -18.52337 -18.24281 -16.98212 -16.85655 -16.65153 -15.69329 -15.53810 -15.33614 -15.10353 -14.69413 -14.16423 -14.10465 -13.90559 -13.66359 -13.25878 -12.90867 -12.84788 -12.32627 -12.14629 -11.90482 -11.83998 -11.49583 -11.36180 -11.26093 -10.98580 -10.82539 -10.18913 -10.04634 -9.90835 -9.71540 -9.63791 -9.28932 -9.20351 -8.77493 -8.70595 -6.90760 -5.71017 -3.13237 0.20133 0.60646 2.43432 2.60386 2.87257 3.39183 3.44193 3.45815 3.62432 3.64290 3.74786 4.14824 4.23958 4.42026 4.54478 4.55660 4.62823 4.79627 4.91998 5.20059 5.26905 5.43017 5.58027 5.64380 5.67750 5.87534 6.09722 6.20535 6.25707 6.45312 6.60297 6.69151 6.90488 7.33115 7.41541 7.54638 7.71566 7.78864 8.11486 8.25777 8.31887 9.15216 9.75531 10.37996 11.33331 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.002849 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.661260 B = 9824.011526 C =10039.609430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.299 6.299 3 C 0.040 3.960 4 C 0.065 3.935 5 N -0.455 5.455 6 C 0.249 3.751 7 C 0.585 3.415 8 O -0.505 6.505 9 N -0.691 5.691 10 C 0.142 3.858 11 H 0.103 0.897 12 C 0.129 3.871 13 N -0.600 5.600 14 C -0.221 4.221 15 H 0.080 0.920 16 C -0.011 4.011 17 N -0.925 5.925 18 Si 0.918 3.082 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.130 3.870 23 C 0.069 3.931 24 H 0.064 0.936 25 O -0.565 6.565 26 N -0.427 5.427 27 C 0.124 3.876 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.178 0.822 32 H 0.408 0.592 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.253 0.747 36 H 0.113 0.887 37 H 0.027 0.973 38 H 0.378 0.622 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 -21.780 -5.380 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.209 6.209 3 C -0.011 4.011 4 C -0.103 4.103 5 N -0.172 5.172 6 C -0.020 4.020 7 C 0.366 3.634 8 O -0.376 6.376 9 N -0.343 5.343 10 C 0.037 3.963 11 H 0.121 0.879 12 C 0.002 3.998 13 N -0.328 5.328 14 C -0.349 4.349 15 H 0.098 0.902 16 C -0.207 4.207 17 N -0.573 5.573 18 Si 0.748 3.252 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.004 3.996 23 C 0.008 3.992 24 H 0.082 0.918 25 O -0.370 6.370 26 N -0.141 5.141 27 C -0.046 4.046 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.194 0.806 32 H 0.244 0.756 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.045 0.955 38 H 0.225 0.775 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.263 -21.275 -5.241 23.417 hybrid contribution -1.541 0.108 0.728 1.708 sum -9.804 -21.167 -4.512 23.760 Atomic orbital electron populations 1.23269 0.77271 1.05080 1.02037 1.86091 1.22257 1.24907 1.87595 1.21231 0.95268 0.86874 0.97771 1.23457 1.01359 0.86621 0.98903 1.68150 1.10312 1.29049 1.09683 1.22861 0.85968 0.94415 0.98739 1.17075 0.86383 0.81789 0.78163 1.90830 1.12603 1.86062 1.48151 1.45770 1.10684 1.04819 1.73067 1.22117 0.96631 0.79504 0.98003 0.87899 1.21642 0.98753 0.86947 0.92438 1.44289 1.78567 1.02021 1.07908 1.19112 1.38004 0.89606 0.88196 0.90173 1.24799 1.01715 0.96579 0.97564 1.69734 1.52050 1.11417 1.24147 0.86016 0.77475 0.79952 0.81724 1.21519 1.21630 1.20642 1.22557 0.99749 0.92767 0.84527 1.23631 0.97490 0.97446 0.80617 0.91827 1.86414 1.68712 1.61171 1.20714 1.68299 1.39747 0.97537 1.08567 1.22917 0.89256 0.96356 0.96064 0.87287 0.91929 0.91888 0.80562 0.75574 0.95057 0.94552 0.93607 0.86896 0.95529 0.77528 0.79884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.84 101.05 0.99 1.05 16 2 O -0.30 -2.01 10.51 -18.89 -0.20 -2.21 16 3 C 0.04 0.34 6.75 -38.68 -0.26 0.08 16 4 C 0.06 0.58 10.31 -17.05 -0.18 0.40 16 5 N -0.46 -5.66 9.55 -11.03 -0.11 -5.76 16 6 C 0.25 3.76 7.59 -157.05 -1.19 2.57 16 7 C 0.59 10.46 7.84 -12.12 -0.10 10.36 16 8 O -0.50 -10.70 16.58 5.36 0.09 -10.61 16 9 N -0.69 -11.68 5.12 -52.83 -0.27 -11.95 16 10 C 0.14 2.78 2.97 -66.10 -0.20 2.59 16 11 H 0.10 2.20 7.69 -51.93 -0.40 1.80 16 12 C 0.13 2.88 6.99 -3.07 -0.02 2.86 16 13 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 14 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 18 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.13 3.10 5.62 -2.53 -0.01 3.09 16 23 C 0.07 1.31 4.04 -24.58 -0.10 1.21 16 24 H 0.06 1.12 8.00 -51.93 -0.42 0.71 16 25 O -0.57 -9.80 13.47 -35.23 -0.47 -10.27 16 26 N -0.43 -6.12 10.11 -11.03 -0.11 -6.24 16 27 C 0.12 1.26 11.27 -17.05 -0.19 1.07 16 28 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.13 7.70 -51.93 -0.40 -0.27 16 30 H 0.06 0.14 7.72 -51.93 -0.40 -0.26 16 31 H 0.18 0.91 6.47 -52.48 -0.34 0.57 16 32 H 0.41 6.04 7.81 -40.82 -0.32 5.72 16 33 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.38 4.93 9.12 45.56 0.42 5.35 16 39 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -35.07 335.72 -6.37 -41.45 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.82 Total: 6.98 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: -1.50 Total: 18.54 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.50 Total: -65.88 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.58 Total: -23.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.07 -6.37 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077355817.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.992 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds