Wall clock time and date at job start Tue Mar 31 2020 05:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99684 * 2 1 4 4 H 1.08996 * 110.63915 * 26.86594 * 3 2 1 5 5 C 1.54319 * 110.87056 * 263.60869 * 3 2 1 6 6 N 1.47028 * 107.26947 * 219.37186 * 5 3 2 7 7 C 1.36936 * 125.64452 * 178.89615 * 6 5 3 8 8 H 1.08002 * 119.99676 * 180.02562 * 7 6 5 9 9 C 1.38811 * 120.00535 * 0.03224 * 7 6 5 10 10 N 1.31622 * 119.99558 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46840 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47217 * 119.99532 * 11 9 7 14 14 H 1.48501 * 109.47429 * 239.99943 * 11 9 7 15 15 C 1.47419 * 108.70371 * 358.94679 * 6 5 3 16 16 C 1.54912 * 104.83391 * 24.12534 * 15 6 5 17 17 H 1.08995 * 111.03512 * 81.08074 * 16 15 6 18 18 N 1.46498 * 111.00363 * 204.91815 * 16 15 6 19 19 C 1.34777 * 119.99828 * 266.91713 * 18 16 15 20 20 O 1.21593 * 119.99949 * 0.28071 * 19 18 16 21 21 C 1.47533 * 119.99975 * 180.27938 * 19 18 16 22 22 C 1.39806 * 120.98317 * 359.71783 * 21 19 18 23 23 N 1.32185 * 118.98243 * 179.71917 * 22 21 19 24 24 C 1.31941 * 121.14008 * 0.57526 * 23 22 21 25 25 N 1.31728 * 122.19234 * 359.70167 * 24 23 22 26 26 C 1.32768 * 120.87538 * 359.97438 * 25 24 23 27 27 O 1.35285 * 120.61453 * 180.02562 * 26 25 24 28 28 H 1.08997 * 109.46790 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46909 * 299.99213 * 1 2 3 30 30 H 1.08992 * 109.47285 * 59.99890 * 1 2 3 31 31 H 1.08999 * 109.88838 * 338.79519 * 5 3 2 32 32 H 1.09006 * 109.87996 * 99.80927 * 5 3 2 33 33 H 0.97001 * 119.99905 * 180.02562 * 10 9 7 34 34 H 1.09002 * 110.36625 * 265.29189 * 15 6 5 35 35 H 1.08996 * 110.36984 * 142.96546 * 15 6 5 36 36 H 0.97001 * 120.00384 * 87.20160 * 18 16 15 37 37 H 1.08005 * 120.50361 * 0.02562 * 22 21 19 38 38 H 1.07990 * 118.90172 * 179.72815 * 24 23 22 39 39 H 0.96697 * 113.99579 * 269.98259 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7425 -1.4330 6 7 3.6668 2.4502 -1.3549 7 6 4.3523 2.9792 -2.4157 8 1 5.2941 3.4822 -2.2533 9 6 3.8367 2.8690 -3.6998 10 7 2.6892 2.2556 -3.8978 11 14 4.7715 3.5912 -5.1469 12 1 6.0239 4.2241 -4.6609 13 1 5.1037 2.5112 -6.1104 14 1 3.9298 4.6132 -5.8196 15 6 4.0970 2.4948 0.0544 16 6 3.3816 1.2958 0.7256 17 1 3.9169 0.3653 0.5370 18 7 3.2164 1.5210 2.1637 19 6 4.1438 1.0639 3.0283 20 8 5.1201 0.4690 2.6143 21 6 3.9743 1.2853 4.4771 22 6 2.8628 1.9717 4.9751 23 7 2.7479 2.1427 6.2808 24 6 3.6662 1.6880 7.1119 25 7 4.7337 1.0404 6.6923 26 6 4.9299 0.8164 5.3984 27 8 6.0280 0.1503 4.9732 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.4775 0.8666 -2.0743 32 1 1.6123 2.4076 -1.8278 33 1 2.3290 2.1782 -4.7951 34 1 3.7839 3.4307 0.5172 35 1 5.1785 2.3790 0.1248 36 1 2.4376 1.9955 2.4941 37 1 2.1072 2.3519 4.3036 38 1 3.5380 1.8518 8.1716 39 1 6.7852 0.7209 4.7835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081835705.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:56 Heat of formation + Delta-G solvation = -25.821317 kcal Electronic energy + Delta-G solvation = -25460.898229 eV Core-core repulsion = 21598.974126 eV Total energy + Delta-G solvation = -3861.924103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.63932 -39.60981 -38.24110 -37.75788 -35.96020 -34.34554 -33.65558 -32.30612 -31.45208 -28.84355 -27.33776 -26.16824 -25.60462 -24.59179 -24.02926 -21.34615 -20.66015 -20.16029 -19.52349 -18.32543 -18.05423 -16.97657 -16.70128 -16.46009 -15.60358 -15.46236 -14.98202 -14.59275 -14.56726 -14.42262 -14.26602 -14.12629 -13.89503 -13.28750 -12.88914 -12.49122 -12.32483 -11.95665 -11.68063 -11.57749 -11.29754 -11.06308 -11.05211 -10.86147 -10.79994 -10.18746 -10.06123 -9.97207 -9.90462 -9.84494 -9.74631 -9.23999 -8.84878 -8.64251 -6.94265 -5.77812 -3.13220 0.04271 0.51607 2.69667 2.88067 3.06952 3.37596 3.42747 3.44227 3.45883 3.61849 3.91178 4.07285 4.37516 4.45891 4.53423 4.84990 5.04760 5.07000 5.31127 5.43680 5.51875 5.57571 5.64259 5.71045 5.77917 5.87240 5.96788 6.06906 6.37359 6.38614 6.53018 6.73589 7.11755 7.19379 7.41249 7.45841 7.55905 7.66513 7.81305 8.12766 8.17594 9.12720 9.72813 10.35143 11.33548 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019738 B = 0.003497 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.248515 B = 8004.213677 C = 8795.406418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.055 3.945 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.082 0.918 9 C -0.006 4.006 10 N -0.921 5.921 11 Si 0.915 3.085 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.110 0.890 18 N -0.708 5.708 19 C 0.566 3.434 20 O -0.512 6.512 21 C -0.254 4.254 22 C 0.197 3.803 23 N -0.529 5.529 24 C 0.337 3.663 25 N -0.544 5.544 26 C 0.419 3.581 27 O -0.453 6.453 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.253 0.747 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.394 0.606 37 H 0.175 0.825 38 H 0.206 0.794 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 0.069 19.067 19.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.004 4.004 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.568 5.568 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.027 3.973 17 H 0.128 0.872 18 N -0.359 5.359 19 C 0.350 3.650 20 O -0.387 6.387 21 C -0.263 4.263 22 C 0.030 3.970 23 N -0.245 5.245 24 C 0.050 3.950 25 N -0.269 5.269 26 C 0.230 3.770 27 O -0.262 6.262 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.228 0.772 37 H 0.192 0.808 38 H 0.222 0.778 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.563 -0.904 19.477 19.666 hybrid contribution 0.131 0.997 -1.527 1.828 sum -2.433 0.093 17.950 18.114 Atomic orbital electron populations 1.22717 0.81661 1.02142 0.99760 1.87922 1.19137 1.27455 1.95032 1.23859 0.92826 0.84164 0.99538 0.91883 1.21560 0.88275 0.97289 0.88935 1.44255 1.21469 1.66364 1.00665 1.19116 1.02448 1.29519 0.84704 0.90057 1.24825 0.97415 1.00604 0.97428 1.69945 1.19235 1.47102 1.20562 0.86001 0.78796 0.78223 0.82467 1.20425 1.21634 1.21728 1.21816 0.97799 0.93660 0.86355 1.22498 0.96764 1.01407 0.76629 0.87162 1.45828 1.24643 1.58086 1.07379 1.17530 0.83622 0.79593 0.84261 1.90856 1.29231 1.40075 1.78546 1.22144 1.00878 1.06578 0.96709 1.23502 0.93236 0.88191 0.92031 1.68428 1.29822 1.22294 1.03918 1.25065 0.82836 0.86185 1.00929 1.68152 1.25141 1.16758 1.16859 1.19491 0.87940 0.83127 0.86407 1.84647 1.21941 1.34210 1.85372 0.90197 0.94836 0.93568 0.91867 0.93248 0.93661 0.95893 0.93094 0.77175 0.80769 0.77753 0.72266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.55 16 2 O -0.38 -6.71 10.44 -35.23 -0.37 -7.08 16 3 C 0.06 0.99 3.09 -24.90 -0.08 0.92 16 4 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 5 C 0.16 3.87 5.15 -3.06 -0.02 3.86 16 6 N -0.60 -14.95 3.39 -170.07 -0.58 -15.53 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 10 N -0.92 -26.46 10.31 55.49 0.57 -25.89 16 11 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.13 2.66 6.93 -2.53 -0.02 2.64 16 16 C 0.13 2.34 3.15 -65.78 -0.21 2.13 16 17 H 0.11 2.27 7.53 -51.93 -0.39 1.88 16 18 N -0.71 -9.54 5.15 -52.77 -0.27 -9.82 16 19 C 0.57 8.11 7.78 -12.47 -0.10 8.01 16 20 O -0.51 -9.21 14.95 -15.86 -0.24 -9.44 16 21 C -0.25 -2.92 5.92 -104.56 -0.62 -3.54 16 22 C 0.20 1.79 10.80 -16.81 -0.18 1.61 16 23 N -0.53 -4.88 10.42 -14.29 -0.15 -5.03 16 24 C 0.34 2.86 12.27 -92.08 -1.13 1.73 16 25 N -0.54 -5.85 10.45 -14.32 -0.15 -6.00 16 26 C 0.42 4.98 7.85 -16.19 -0.13 4.85 16 27 O -0.45 -5.46 11.81 -38.69 -0.46 -5.92 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.71 7.30 -51.93 -0.38 1.33 16 32 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 33 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.39 3.94 6.70 -40.82 -0.27 3.67 16 37 H 0.18 1.06 6.53 -52.48 -0.34 0.72 16 38 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.42 3.21 9.06 45.56 0.41 3.63 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -34.95 334.53 -7.09 -42.04 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -3.84 Total: 3.81 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: -1.63 Total: 17.04 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.58 Total: -62.27 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -1.06 Total: -22.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.95 -7.09 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081835705.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.217 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds