Wall clock time and date at job start Tue Mar 31 2020 04:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 119.89347 * 2 1 4 4 N 1.30438 * 121.82210 * 179.97438 * 3 2 1 5 5 C 1.34319 * 121.47601 * 359.97438 * 4 3 2 6 6 C 1.48561 * 120.20700 * 179.97438 * 5 4 3 7 7 O 1.21466 * 120.00298 * 179.97438 * 6 5 4 8 8 N 1.34782 * 120.00085 * 359.97438 * 6 5 4 9 9 C 1.46495 * 119.99820 * 180.02562 * 8 6 5 10 10 H 1.08994 * 110.64416 * 34.30082 * 9 8 6 11 11 C 1.54320 * 110.72063 * 271.15549 * 9 8 6 12 12 N 1.47025 * 107.27497 * 219.44605 * 11 9 8 13 13 C 1.36934 * 125.65292 * 178.97764 * 12 11 9 14 14 H 1.08000 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.38806 * 120.00362 * 180.02562 * 13 12 11 16 16 N 1.31624 * 120.00193 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00143 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47231 * 89.99815 * 17 15 13 19 19 H 1.48509 * 109.47161 * 209.99814 * 17 15 13 20 20 H 1.48502 * 109.47275 * 329.99636 * 17 15 13 21 21 C 1.47423 * 108.70150 * 358.94267 * 12 11 9 22 22 C 1.55125 * 104.94226 * 24.00000 * 21 12 11 23 23 H 1.09003 * 111.16729 * 205.12750 * 22 21 12 24 24 O 1.42900 * 110.93575 * 81.21706 * 22 21 12 25 25 C 1.37922 * 119.58289 * 359.97438 * 5 4 3 26 26 C 1.34983 * 119.89090 * 179.72014 * 2 1 3 27 27 O 1.21913 * 120.71453 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47060 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47073 * 120.00303 * 1 2 3 30 30 H 1.09000 * 109.47212 * 240.00385 * 1 2 3 31 31 H 1.08002 * 119.08862 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99793 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.88541 * 338.86570 * 11 9 8 34 34 H 1.08998 * 109.88278 * 99.87689 * 11 9 8 35 35 H 0.96994 * 120.00698 * 180.02562 * 16 15 13 36 36 H 1.09003 * 110.37126 * 142.96327 * 21 12 11 37 37 H 1.08998 * 110.36835 * 265.29334 * 21 12 11 38 38 H 0.96700 * 114.00261 * 67.95878 * 24 22 21 39 39 H 1.08000 * 120.83191 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1368 1.1684 0.0000 4 7 3.4404 1.2123 0.0005 5 6 4.1799 0.0910 0.0015 6 6 5.6632 0.1739 0.0015 7 8 6.3283 -0.8425 0.0029 8 7 6.2710 1.3769 -0.0001 9 6 7.7336 1.4586 -0.0007 10 1 8.1641 0.6381 -0.5747 11 6 8.2809 1.4616 1.4422 12 7 9.3979 2.4167 1.4835 13 6 10.1420 2.7273 2.5902 14 1 9.9252 2.2545 3.5368 15 6 11.1742 3.6506 2.4960 16 7 11.4382 4.2272 1.3426 17 14 12.1887 4.0748 4.0060 18 1 13.3518 3.1557 4.0952 19 1 12.6715 5.4752 3.9006 20 1 11.3496 3.9307 5.2227 21 6 9.5848 2.9840 0.1357 22 6 8.2068 2.8266 -0.5592 23 1 8.3145 2.7900 -1.6432 24 8 7.3162 3.8743 -0.1703 25 6 3.5535 -1.1377 0.0027 26 6 2.1377 -1.1703 0.0057 27 8 1.5394 -2.2324 0.0104 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 1.5802 2.0940 0.0004 32 1 5.7399 2.1885 -0.0009 33 1 7.4995 1.7750 2.1344 34 1 8.6327 0.4646 1.7073 35 1 12.1597 4.8721 1.2765 36 1 9.8592 4.0369 0.2019 37 1 10.3467 2.4260 -0.4086 38 1 7.5710 4.7484 -0.4961 39 1 4.1283 -2.0521 0.0031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083537941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:47 Heat of formation + Delta-G solvation = -31.242855 kcal Electronic energy + Delta-G solvation = -25163.099450 eV Core-core repulsion = 21300.940251 eV Total energy + Delta-G solvation = -3862.159199 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09305 -39.74931 -38.07833 -37.69222 -35.56011 -34.72683 -34.04179 -31.68652 -31.32623 -29.03044 -28.27495 -27.02212 -25.13586 -24.77529 -24.01805 -21.15688 -20.51392 -19.86801 -18.89647 -18.06798 -17.48898 -17.11855 -16.80849 -16.65008 -16.00627 -15.42066 -14.87056 -14.84386 -14.74780 -14.32149 -14.09390 -13.67721 -13.62532 -13.26875 -13.15600 -13.03247 -12.91977 -12.52676 -11.79891 -11.34585 -11.09863 -10.89259 -10.83359 -10.76801 -10.63163 -10.56093 -10.36626 -10.08975 -9.86792 -9.83718 -9.23310 -8.91026 -8.73387 -8.67605 -6.84979 -5.69296 -3.09101 0.00837 1.33016 2.00556 2.65356 3.05698 3.40094 3.45130 3.46937 3.50791 3.59861 4.08997 4.17054 4.46053 4.52713 4.67337 4.72627 4.90309 5.03621 5.15123 5.32494 5.36940 5.39148 5.49013 5.70386 5.85361 5.91700 6.04056 6.13295 6.26873 6.48235 6.69242 6.90611 7.23244 7.26932 7.39303 7.56438 7.71216 7.77972 8.11206 8.31273 8.32493 9.18350 9.79171 10.42349 11.35901 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.028563 B = 0.002899 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.065190 B = 9657.681530 C = 9791.468907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.526 5.526 3 C 0.372 3.628 4 N -0.521 5.521 5 C 0.136 3.864 6 C 0.561 3.439 7 O -0.527 6.527 8 N -0.681 5.681 9 C 0.139 3.861 10 H 0.103 0.897 11 C 0.131 3.869 12 N -0.596 5.596 13 C -0.215 4.215 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.927 5.927 17 Si 0.917 3.083 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.127 3.873 22 C 0.068 3.932 23 H 0.060 0.940 24 O -0.559 6.559 25 C -0.215 4.215 26 C 0.518 3.482 27 O -0.528 6.528 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.211 0.789 32 H 0.420 0.580 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.252 0.748 36 H 0.116 0.884 37 H 0.023 0.977 38 H 0.379 0.621 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.437 -1.270 -6.753 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.244 5.244 3 C 0.087 3.913 4 N -0.244 5.244 5 C 0.014 3.986 6 C 0.344 3.656 7 O -0.403 6.403 8 N -0.332 5.332 9 C 0.034 3.966 10 H 0.121 0.879 11 C 0.004 3.996 12 N -0.322 5.322 13 C -0.344 4.344 14 H 0.096 0.904 15 C -0.208 4.208 16 N -0.577 5.577 17 Si 0.747 3.253 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.002 3.998 22 C 0.008 3.992 23 H 0.078 0.922 24 O -0.365 6.365 25 C -0.241 4.241 26 C 0.316 3.684 27 O -0.405 6.405 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.227 0.773 32 H 0.258 0.742 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.134 0.866 37 H 0.040 0.960 38 H 0.227 0.773 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.898 -2.419 -6.382 21.985 hybrid contribution 0.220 0.341 0.510 0.652 sum -20.678 -2.078 -5.873 21.596 Atomic orbital electron populations 1.22220 0.76199 1.04630 1.05023 1.46734 1.10831 1.08258 1.58610 1.25007 0.89101 0.89839 0.87316 1.68323 1.04095 1.29769 1.22198 1.21523 0.94928 0.88982 0.93131 1.17858 0.85216 0.84515 0.77967 1.90809 1.64417 1.35033 1.50087 1.45722 1.07882 1.08263 1.71289 1.22277 0.78511 0.97124 0.98732 0.87899 1.21589 0.91223 0.93729 0.93035 1.44273 1.35052 1.46356 1.06545 1.19099 1.08678 1.18813 0.87789 0.90394 1.24754 0.99102 0.99537 0.97360 1.69713 1.32938 1.32319 1.22689 0.86029 0.80074 0.77409 0.81741 1.21635 1.21667 1.20700 1.22649 0.89450 1.03348 0.84387 1.23622 0.92926 0.86238 0.96458 0.92208 1.86255 1.51674 1.18899 1.79686 1.23470 0.92785 1.00679 1.07198 1.17305 0.88681 0.83196 0.79195 1.90958 1.70388 1.28179 1.51013 0.88561 0.89653 0.89627 0.77290 0.74242 0.95161 0.95256 0.93724 0.86627 0.95960 0.77300 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 10.13 59.85 0.61 0.83 16 2 N -0.53 -4.00 2.97 -128.42 -0.38 -4.39 16 3 C 0.37 2.39 11.48 -90.67 -1.04 1.35 16 4 N -0.52 -5.46 9.64 -10.82 -0.10 -5.56 16 5 C 0.14 1.80 6.77 -82.64 -0.56 1.24 16 6 C 0.56 9.14 7.83 -12.00 -0.09 9.05 16 7 O -0.53 -10.09 16.05 5.40 0.09 -10.00 16 8 N -0.68 -11.02 5.07 -52.75 -0.27 -11.29 16 9 C 0.14 2.57 3.15 -66.10 -0.21 2.36 16 10 H 0.10 1.92 7.62 -51.93 -0.40 1.53 16 11 C 0.13 2.93 7.00 -3.06 -0.02 2.90 16 12 N -0.60 -15.31 3.40 -169.94 -0.58 -15.89 16 13 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 14 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 15 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 16 N -0.93 -26.33 10.09 55.49 0.56 -25.77 16 17 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.13 2.95 5.62 -2.41 -0.01 2.93 16 22 C 0.07 1.22 4.31 -24.47 -0.11 1.12 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 O -0.56 -9.35 12.23 -35.23 -0.43 -9.78 16 25 C -0.22 -2.82 9.67 -38.41 -0.37 -3.19 16 26 C 0.52 6.27 7.47 -14.88 -0.11 6.15 16 27 O -0.53 -7.93 17.18 5.00 0.09 -7.84 16 28 H 0.10 -0.03 7.71 -51.93 -0.40 -0.43 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.21 0.22 7.79 -52.49 -0.41 -0.19 16 32 H 0.42 6.38 6.94 -40.82 -0.28 6.10 16 33 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.12 2.95 5.87 -51.93 -0.30 2.65 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.38 5.03 9.12 45.56 0.42 5.45 16 39 H 0.17 2.34 7.68 -52.49 -0.40 1.93 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -36.30 334.29 -7.04 -43.35 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.86 Total: 6.99 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: -2.17 Total: 18.11 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.77 Total: -62.89 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.26 Total: -27.63 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.30 -7.04 -43.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083537941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.104 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds