Wall clock time and date at job start Tue Mar 31 2020 04:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 119.89347 * 2 1 4 4 N 1.30438 * 121.82210 * 179.97438 * 3 2 1 5 5 C 1.34319 * 121.47601 * 359.97438 * 4 3 2 6 6 C 1.48561 * 120.20700 * 179.97438 * 5 4 3 7 7 O 1.21466 * 120.00298 * 179.97438 * 6 5 4 8 8 N 1.34782 * 120.00085 * 359.97438 * 6 5 4 9 9 C 1.46495 * 119.99820 * 180.02562 * 8 6 5 10 10 H 1.08994 * 110.64416 * 34.30082 * 9 8 6 11 11 C 1.54320 * 110.72063 * 271.15549 * 9 8 6 12 12 N 1.47025 * 107.27497 * 219.44605 * 11 9 8 13 13 C 1.36934 * 125.65292 * 178.97764 * 12 11 9 14 14 H 1.08000 * 119.99898 * 359.97438 * 13 12 11 15 15 C 1.38806 * 120.00362 * 180.02562 * 13 12 11 16 16 N 1.31624 * 120.00193 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00143 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47231 * 89.99815 * 17 15 13 19 19 H 1.48509 * 109.47161 * 209.99814 * 17 15 13 20 20 H 1.48502 * 109.47275 * 329.99636 * 17 15 13 21 21 C 1.47423 * 108.70150 * 358.94267 * 12 11 9 22 22 C 1.55125 * 104.94226 * 24.00000 * 21 12 11 23 23 H 1.09003 * 111.16729 * 205.12750 * 22 21 12 24 24 O 1.42900 * 110.93575 * 81.21706 * 22 21 12 25 25 C 1.37922 * 119.58289 * 359.97438 * 5 4 3 26 26 C 1.34983 * 119.89090 * 179.72014 * 2 1 3 27 27 O 1.21913 * 120.71453 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47060 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47073 * 120.00303 * 1 2 3 30 30 H 1.09000 * 109.47212 * 240.00385 * 1 2 3 31 31 H 1.08002 * 119.08862 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99793 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.88541 * 338.86570 * 11 9 8 34 34 H 1.08998 * 109.88278 * 99.87689 * 11 9 8 35 35 H 0.96994 * 120.00698 * 180.02562 * 16 15 13 36 36 H 1.09003 * 110.37126 * 142.96327 * 21 12 11 37 37 H 1.08998 * 110.36835 * 265.29334 * 21 12 11 38 38 H 0.96700 * 114.00261 * 67.95878 * 24 22 21 39 39 H 1.08000 * 120.83191 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1368 1.1684 0.0000 4 7 3.4404 1.2123 0.0005 5 6 4.1799 0.0910 0.0015 6 6 5.6632 0.1739 0.0015 7 8 6.3283 -0.8425 0.0029 8 7 6.2710 1.3769 -0.0001 9 6 7.7336 1.4586 -0.0007 10 1 8.1641 0.6381 -0.5747 11 6 8.2809 1.4616 1.4422 12 7 9.3979 2.4167 1.4835 13 6 10.1420 2.7273 2.5902 14 1 9.9252 2.2545 3.5368 15 6 11.1742 3.6506 2.4960 16 7 11.4382 4.2272 1.3426 17 14 12.1887 4.0748 4.0060 18 1 13.3518 3.1557 4.0952 19 1 12.6715 5.4752 3.9006 20 1 11.3496 3.9307 5.2227 21 6 9.5848 2.9840 0.1357 22 6 8.2068 2.8266 -0.5592 23 1 8.3145 2.7900 -1.6432 24 8 7.3162 3.8743 -0.1703 25 6 3.5535 -1.1377 0.0027 26 6 2.1377 -1.1703 0.0057 27 8 1.5394 -2.2324 0.0104 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 -0.3634 -0.5138 0.8900 31 1 1.5802 2.0940 0.0004 32 1 5.7399 2.1885 -0.0009 33 1 7.4995 1.7750 2.1344 34 1 8.6327 0.4646 1.7073 35 1 12.1597 4.8721 1.2765 36 1 9.8592 4.0369 0.2019 37 1 10.3467 2.4260 -0.4086 38 1 7.5710 4.7484 -0.4961 39 1 4.1283 -2.0521 0.0031 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083537941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:44 Heat of formation + Delta-G solvation = -60.961161 kcal Electronic energy + Delta-G solvation = -25164.388132 eV Core-core repulsion = 21300.940251 eV Total energy + Delta-G solvation = -3863.447881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.90539 -41.10465 -39.49947 -38.75386 -36.37452 -36.31940 -35.56297 -33.58414 -32.22439 -30.52023 -29.38464 -28.50429 -26.60816 -25.65326 -25.26471 -22.59186 -22.06616 -21.42260 -19.91824 -19.26891 -18.82506 -18.20259 -18.08507 -17.53714 -17.01509 -16.90106 -16.70874 -16.19583 -15.78803 -15.69295 -15.56770 -14.80686 -14.65893 -14.44241 -14.38227 -14.31732 -13.92794 -13.52435 -13.43846 -13.20864 -12.94576 -12.74598 -12.24870 -12.14193 -11.95439 -11.89342 -11.83011 -11.49708 -11.43703 -11.09016 -10.86326 -10.69508 -10.21174 -9.77148 -8.89518 -7.79751 -5.23086 -0.89030 0.51878 1.36746 1.47420 1.49015 1.52521 1.57741 1.81674 2.48837 2.53992 2.80316 3.18570 3.30944 3.32072 3.60948 3.70269 3.85221 3.91489 3.94708 4.08562 4.29447 4.39986 4.45043 4.48525 4.52632 4.73175 4.83464 4.85225 4.91092 5.17628 5.33187 5.37765 5.41261 5.48040 5.73053 6.26738 6.31156 6.53626 6.63703 6.91153 7.06408 7.10025 7.73736 8.36450 9.22264 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.028563 B = 0.002899 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.065190 B = 9657.681530 C = 9791.468907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.516 5.516 3 C 0.399 3.601 4 N -0.543 5.543 5 C 0.147 3.853 6 C 0.559 3.441 7 O -0.562 6.562 8 N -0.670 5.670 9 C 0.149 3.851 10 H 0.102 0.898 11 C 0.131 3.869 12 N -0.615 5.615 13 C -0.241 4.241 14 H 0.073 0.927 15 C -0.059 4.059 16 N -0.944 5.944 17 Si 0.980 3.020 18 H -0.289 1.289 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.127 3.873 22 C 0.093 3.907 23 H 0.098 0.902 24 O -0.561 6.561 25 C -0.241 4.241 26 C 0.516 3.484 27 O -0.568 6.568 28 H 0.151 0.849 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.278 0.722 32 H 0.427 0.573 33 H 0.023 0.977 34 H 0.013 0.987 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.001 0.999 38 H 0.397 0.603 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.974 0.889 -7.121 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.231 5.231 3 C 0.117 3.883 4 N -0.267 5.267 5 C 0.024 3.976 6 C 0.344 3.656 7 O -0.441 6.441 8 N -0.321 5.321 9 C 0.043 3.957 10 H 0.120 0.880 11 C 0.005 3.995 12 N -0.342 5.342 13 C -0.370 4.370 14 H 0.091 0.909 15 C -0.252 4.252 16 N -0.594 5.594 17 Si 0.809 3.191 18 H -0.216 1.216 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.001 3.999 22 C 0.032 3.968 23 H 0.115 0.885 24 O -0.369 6.369 25 C -0.268 4.268 26 C 0.315 3.685 27 O -0.448 6.448 28 H 0.169 0.831 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.293 0.707 32 H 0.267 0.733 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.019 0.981 38 H 0.247 0.753 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.514 -0.208 -6.765 24.469 hybrid contribution 0.932 -0.271 0.639 1.162 sum -22.583 -0.479 -6.126 23.404 Atomic orbital electron populations 1.22627 0.73192 1.08158 1.04689 1.46814 1.12650 1.07193 1.56467 1.26280 0.88016 0.91055 0.82948 1.68330 1.05999 1.28147 1.24272 1.21050 0.93274 0.89945 0.93286 1.18324 0.86688 0.83792 0.76812 1.90788 1.65751 1.36150 1.51415 1.45538 1.06691 1.08714 1.71160 1.21985 0.79963 0.97720 0.96080 0.88029 1.21622 0.90236 0.92094 0.95582 1.44531 1.35525 1.47173 1.06922 1.19376 1.09709 1.19325 0.88617 0.90949 1.25535 1.00052 0.99456 1.00161 1.69931 1.33014 1.32346 1.24086 0.85056 0.78369 0.76920 0.78798 1.21572 1.21329 1.19896 1.22562 0.92286 1.01286 0.83756 1.23312 0.89718 0.86110 0.97665 0.88485 1.86220 1.50864 1.19768 1.80087 1.23320 0.93812 1.00094 1.09565 1.17157 0.88272 0.84102 0.79008 1.90929 1.70938 1.29897 1.53047 0.83092 0.89904 0.90139 0.70734 0.73292 0.95948 0.96937 0.94015 0.88916 0.98065 0.75266 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.18 10.13 127.77 1.29 1.48 16 2 N -0.52 -6.22 2.97 -678.21 -2.01 -8.23 16 3 C 0.40 3.26 11.48 180.37 2.07 5.33 16 4 N -0.54 -9.80 9.64 -188.16 -1.81 -11.61 16 5 C 0.15 3.81 6.77 41.45 0.28 4.09 16 6 C 0.56 18.25 7.83 87.00 0.68 18.93 16 7 O -0.56 -22.29 16.05 -3.61 -0.06 -22.34 16 8 N -0.67 -21.06 5.07 -439.11 -2.23 -23.29 16 9 C 0.15 5.47 3.15 46.18 0.15 5.61 16 10 H 0.10 3.81 7.62 -2.39 -0.02 3.79 16 11 C 0.13 5.99 7.00 86.73 0.61 6.60 16 12 N -0.62 -32.28 3.40 -691.57 -2.35 -34.62 16 13 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 14 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 15 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 16 N -0.94 -54.23 10.09 21.65 0.22 -54.01 16 17 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 C 0.13 5.92 5.62 86.93 0.49 6.41 16 22 C 0.09 3.19 4.31 32.06 0.14 3.33 16 23 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 24 O -0.56 -17.47 12.23 -148.98 -1.82 -19.30 16 25 C -0.24 -6.48 9.67 23.03 0.22 -6.26 16 26 C 0.52 12.23 7.47 85.04 0.64 12.87 16 27 O -0.57 -17.33 17.18 -5.03 -0.09 -17.42 16 28 H 0.15 -1.12 7.71 -2.39 -0.02 -1.14 16 29 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.28 -1.59 7.79 -2.91 -0.02 -1.61 16 32 H 0.43 12.12 6.94 -92.71 -0.64 11.47 16 33 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.09 4.79 5.87 -2.39 -0.01 4.78 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.40 9.49 9.12 -74.06 -0.68 8.81 16 39 H 0.15 4.51 7.68 -2.91 -0.02 4.49 16 Total: -1.00 -83.90 334.29 -0.44 -84.34 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.20 Total: 16.33 kcal Atomic # 6 Polarization: 34.67 SS G_CDS: 7.89 Total: 42.57 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -8.19 Total: -131.77 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -1.97 Total: -59.06 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -83.90 -0.44 -84.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083537941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.379 kcal (2) G-P(sol) polarization free energy of solvation -83.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds