Wall clock time and date at job start Tue Mar 31 2020 03:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37897 * 120.05797 * 2 1 4 4 C 1.38421 * 120.21727 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.33695 * 359.97438 * 4 3 2 6 6 C 1.38282 * 120.11771 * 359.77480 * 5 4 3 7 7 F 1.35093 * 120.10887 * 180.25405 * 6 5 4 8 8 C 1.39622 * 120.06324 * 179.97438 * 2 1 3 9 9 C 1.47703 * 120.16373 * 0.02695 * 8 2 1 10 10 O 1.21558 * 119.99744 * 90.00084 * 9 8 2 11 11 N 1.34771 * 119.99676 * 269.99889 * 9 8 2 12 12 C 1.46507 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.63776 * 36.68348 * 12 11 9 14 14 C 1.54316 * 110.71772 * 273.54514 * 12 11 9 15 15 N 1.47022 * 107.27320 * 263.82953 * 14 12 11 16 16 C 1.36938 * 125.65145 * 181.02283 * 15 14 12 17 17 H 1.08002 * 119.99798 * 13.61610 * 16 15 14 18 18 C 1.38805 * 120.00326 * 193.61334 * 16 15 14 19 19 N 1.31623 * 120.00152 * 27.28149 * 18 16 15 20 20 Si 1.86803 * 120.00275 * 207.28323 * 18 16 15 21 21 H 1.48501 * 109.46920 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47248 * 239.99936 * 20 18 16 23 23 H 1.48500 * 109.46962 * 119.99939 * 20 18 16 24 24 C 1.47423 * 108.69958 * 1.28573 * 15 14 12 25 25 C 1.55125 * 104.72395 * 335.55457 * 24 15 14 26 26 H 1.09001 * 111.19051 * 279.19096 * 25 24 15 27 27 O 1.42902 * 110.93665 * 155.28677 * 25 24 15 28 28 H 1.09004 * 109.47396 * 270.02734 * 1 2 3 29 29 H 1.08996 * 109.47382 * 30.03011 * 1 2 3 30 30 H 1.09008 * 109.46928 * 150.02730 * 1 2 3 31 31 H 1.07998 * 119.89319 * 359.96997 * 3 2 1 32 32 H 1.08001 * 119.83002 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.93758 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00897 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.88637 * 144.40958 * 14 12 11 36 36 H 1.09003 * 109.88406 * 23.24623 * 14 12 11 37 37 H 0.97003 * 119.99184 * 5.85303 * 19 18 16 38 38 H 1.09002 * 110.36499 * 94.49043 * 24 15 14 39 39 H 1.09005 * 110.36367 * 216.80049 * 24 15 14 40 40 H 0.96700 * 113.99787 * 67.96452 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1935 0.0000 4 6 3.5819 1.1974 0.0005 5 6 4.2835 0.0061 0.0016 6 6 3.6049 -1.1988 0.0069 7 9 4.2907 -2.3627 0.0131 8 6 2.2064 -1.2084 0.0005 9 6 1.4730 -2.4905 0.0005 10 8 1.1716 -3.0182 -1.0522 11 7 1.1379 -3.0751 1.1677 12 6 0.4109 -4.3470 1.1677 13 1 0.7498 -4.9832 0.3501 14 6 -1.1106 -4.1061 1.0775 15 7 -1.6406 -4.1437 2.4484 16 6 -2.9554 -3.9929 2.8002 17 1 -3.7262 -4.0506 2.0459 18 6 -3.2975 -3.7660 4.1262 19 7 -2.4425 -3.1764 4.9348 20 14 -4.9712 -4.2974 4.7631 21 1 -5.7404 -4.9331 3.6633 22 1 -5.7103 -3.1104 5.2631 23 1 -4.7932 -5.2719 5.8695 24 6 -0.5212 -4.3642 3.3820 25 6 0.5682 -5.0692 2.5319 26 1 0.3638 -6.1355 2.4353 27 8 1.8682 -4.8473 3.0820 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5135 31 1 1.6569 2.1284 -0.0005 32 1 4.1165 2.1358 0.0010 33 1 5.3634 0.0167 0.0024 34 1 1.3787 -2.6542 2.0078 35 1 -1.5752 -4.8897 0.4789 36 1 -1.3058 -3.1310 0.6312 37 1 -1.6086 -2.8245 4.5858 38 1 -0.1516 -3.4120 3.7626 39 1 -0.8346 -5.0067 4.2049 40 1 2.0134 -5.2795 3.9348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084117572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:56 Heat of formation + Delta-G solvation = -102.362033 kcal Electronic energy + Delta-G solvation = -26029.388157 eV Core-core repulsion = 22144.225038 eV Total energy + Delta-G solvation = -3885.163120 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.09980 -41.57412 -40.16636 -39.10110 -36.90397 -35.59004 -34.01670 -33.58492 -31.96834 -30.12405 -29.15992 -28.21904 -26.33617 -24.97929 -22.95567 -22.42716 -22.08106 -21.45655 -19.73184 -19.15284 -18.47145 -18.10484 -17.77617 -17.38440 -16.77001 -16.58609 -16.26781 -16.00022 -15.51630 -15.38608 -15.25884 -14.78538 -14.70334 -14.65225 -14.37814 -14.23210 -14.08290 -13.41998 -13.27139 -12.95638 -12.87361 -12.86130 -12.72681 -12.54497 -12.38472 -12.03004 -11.88762 -11.75493 -11.22989 -11.03165 -10.58301 -10.31018 -10.04747 -9.75993 -9.11586 -8.37095 -5.37751 -0.13851 0.07880 1.28224 1.58423 1.65288 1.82532 1.92528 2.44191 2.57962 2.87946 3.02574 3.16595 3.41625 3.46159 3.58898 3.63307 3.73761 3.85572 4.06521 4.12490 4.21465 4.30011 4.39111 4.40593 4.54405 4.59882 4.66892 4.74225 4.87794 4.88856 4.98713 5.02593 5.07394 5.23344 5.28084 5.34258 5.58512 5.77490 6.24877 6.27748 6.70395 6.80979 6.93781 7.63159 8.17076 8.95980 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.018318 B = 0.004203 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.204950 B = 6660.085113 C = 7302.582804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.033 4.033 3 C -0.125 4.125 4 C -0.056 4.056 5 C -0.155 4.155 6 C 0.110 3.890 7 F -0.146 7.146 8 C -0.188 4.188 9 C 0.567 3.433 10 O -0.574 6.574 11 N -0.684 5.684 12 C 0.148 3.852 13 H 0.101 0.899 14 C 0.130 3.870 15 N -0.616 5.616 16 C -0.349 4.349 17 H 0.060 0.940 18 C -0.070 4.070 19 N -0.944 5.944 20 Si 1.120 2.880 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.128 3.872 25 C 0.099 3.901 26 H 0.097 0.903 27 O -0.559 6.559 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.040 0.960 31 H 0.168 0.832 32 H 0.183 0.817 33 H 0.168 0.832 34 H 0.409 0.591 35 H 0.042 0.958 36 H 0.015 0.985 37 H 0.258 0.742 38 H 0.016 0.984 39 H 0.036 0.964 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.801 7.961 -6.629 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.034 4.034 3 C -0.143 4.143 4 C -0.074 4.074 5 C -0.174 4.174 6 C 0.090 3.910 7 F -0.125 7.125 8 C -0.192 4.192 9 C 0.354 3.646 10 O -0.454 6.454 11 N -0.333 5.333 12 C 0.042 3.958 13 H 0.119 0.881 14 C 0.004 3.996 15 N -0.344 5.344 16 C -0.477 4.477 17 H 0.078 0.922 18 C -0.267 4.267 19 N -0.587 5.587 20 Si 0.944 3.056 21 H -0.201 1.201 22 H -0.218 1.218 23 H -0.211 1.211 24 C 0.002 3.998 25 C 0.038 3.962 26 H 0.115 0.885 27 O -0.367 6.367 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.059 0.941 31 H 0.186 0.814 32 H 0.200 0.800 33 H 0.186 0.814 34 H 0.244 0.756 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.054 0.946 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 12.638 7.741 -6.552 16.204 hybrid contribution 0.749 -0.543 -0.490 1.047 sum 13.387 7.198 -7.042 16.752 Atomic orbital electron populations 1.20901 0.90381 1.03621 1.02927 1.19973 0.96419 0.91348 0.95626 1.21474 0.95076 0.97437 1.00263 1.21666 0.93593 0.98735 0.93379 1.21467 1.02506 0.89824 1.03569 1.17983 0.87910 0.82734 1.02374 1.91493 1.79426 1.47763 1.93808 1.19833 0.93012 0.94073 1.12253 1.18454 0.78108 0.84502 0.83545 1.90744 1.56601 1.65645 1.32369 1.45682 1.56110 1.22980 1.08542 1.21919 0.90729 0.85147 0.97982 0.88146 1.21778 0.91805 0.98298 0.87763 1.44606 1.03470 1.85006 1.01345 1.20059 0.82246 1.49216 0.96147 0.92183 1.27068 1.08225 0.97805 0.93556 1.70862 1.12252 1.36256 1.39323 0.82799 0.71183 0.76162 0.75443 1.20098 1.21764 1.21086 1.22118 0.88095 0.96696 0.92899 1.23147 0.82818 0.98666 0.91534 0.88500 1.86380 1.30279 1.78168 1.41849 0.90924 0.87549 0.94065 0.81416 0.79996 0.81439 0.75571 0.93996 0.96728 0.93150 0.96664 0.94599 0.74900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 9.62 71.24 0.69 -2.57 16 2 C -0.03 -0.84 5.91 -19.61 -0.12 -0.95 16 3 C -0.12 -2.09 9.68 22.23 0.22 -1.87 16 4 C -0.06 -0.74 10.04 22.32 0.22 -0.52 16 5 C -0.16 -2.78 10.01 22.28 0.22 -2.56 16 6 C 0.11 3.00 7.29 22.67 0.17 3.16 16 7 F -0.15 -4.54 16.83 44.97 0.76 -3.79 16 8 C -0.19 -5.80 5.64 -20.05 -0.11 -5.91 16 9 C 0.57 21.34 5.36 86.75 0.47 21.80 16 10 O -0.57 -25.24 16.83 -3.90 -0.07 -25.30 16 11 N -0.68 -25.06 4.78 -439.94 -2.10 -27.16 16 12 C 0.15 5.61 3.14 46.17 0.14 5.76 16 13 H 0.10 3.75 7.69 -2.39 -0.02 3.73 16 14 C 0.13 5.77 6.98 86.73 0.61 6.38 16 15 N -0.62 -31.15 3.33 -691.57 -2.30 -33.45 16 16 C -0.35 -19.69 10.05 84.03 0.84 -18.85 16 17 H 0.06 3.42 7.96 -2.91 -0.02 3.40 16 18 C -0.07 -3.96 5.09 84.86 0.43 -3.53 16 19 N -0.94 -56.19 12.82 21.65 0.28 -55.91 16 20 Si 1.12 50.43 30.00 68.60 2.06 52.49 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C 0.13 5.73 4.93 86.93 0.43 6.16 16 25 C 0.10 3.45 4.23 32.06 0.14 3.59 16 26 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 27 O -0.56 -16.61 12.63 -148.98 -1.88 -18.49 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.11 2.10 8.09 -2.39 -0.02 2.08 16 30 H 0.04 1.36 7.08 -2.38 -0.02 1.34 16 31 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 33 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.41 14.54 8.18 -92.71 -0.76 13.78 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.01 0.71 8.04 -2.39 -0.02 0.69 16 37 H 0.26 15.47 5.83 -92.71 -0.54 14.93 16 38 H 0.02 0.75 6.84 -2.39 -0.02 0.74 16 39 H 0.04 1.75 7.73 -2.38 -0.02 1.73 16 40 H 0.40 8.37 9.12 -74.06 -0.68 7.70 16 Total: -1.00 -75.85 341.67 0.97 -74.88 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.11 Total: 26.65 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 4.34 Total: 10.08 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -4.12 Total: -116.52 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.95 Total: -43.79 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.76 Total: -3.79 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.06 Total: 52.49 kcal Total: -75.85 0.97 -74.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084117572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.483 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds