Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99733 * 2 1 4 4 C 1.53004 * 109.46563 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47045 * 65.00528 * 4 3 2 6 6 C 1.46494 * 119.99669 * 269.99744 * 5 4 3 7 7 C 1.50704 * 109.47047 * 263.74021 * 6 5 4 8 8 H 1.08005 * 119.99955 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00151 * 180.02562 * 7 6 5 10 10 N 1.31522 * 120.00030 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00228 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47280 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47698 * 119.99744 * 11 9 7 14 14 H 1.48508 * 109.46894 * 239.99698 * 11 9 7 15 15 C 1.34773 * 119.99975 * 89.99534 * 5 4 3 16 16 O 1.21359 * 120.00185 * 354.61372 * 15 5 4 17 17 C 1.49358 * 119.99877 * 174.61278 * 15 5 4 18 18 O 1.21374 * 120.00064 * 0.26137 * 17 15 5 19 19 N 1.34774 * 119.99813 * 180.25910 * 17 15 5 20 20 C 1.39778 * 119.99623 * 184.94281 * 19 17 15 21 21 C 1.39285 * 120.87956 * 325.42418 * 20 19 17 22 22 N 1.32256 * 119.00812 * 179.70413 * 21 20 19 23 23 C 1.31797 * 120.90179 * 0.27442 * 22 21 20 24 24 N 1.31801 * 121.93763 * 0.02562 * 23 22 21 25 25 C 1.32258 * 120.89716 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47266 * 299.99624 * 1 2 3 27 27 H 1.09008 * 109.47012 * 60.00098 * 1 2 3 28 28 H 1.09001 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46749 * 60.00502 * 3 2 1 30 30 H 1.08999 * 109.47390 * 300.00023 * 3 2 1 31 31 H 1.08999 * 109.47263 * 305.00297 * 4 3 2 32 32 H 1.09004 * 109.47008 * 185.00334 * 4 3 2 33 33 H 1.09004 * 109.47775 * 23.73839 * 6 5 4 34 34 H 1.08998 * 109.47121 * 143.74599 * 6 5 4 35 35 H 0.96994 * 119.99655 * 180.02562 * 10 9 7 36 36 H 0.97001 * 120.00039 * 4.94893 * 19 17 15 37 37 H 1.08001 * 120.49246 * 359.97438 * 21 20 19 38 38 H 1.08001 * 119.03174 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.50031 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.1062 -0.8925 -1.3404 7 6 5.5396 -1.2856 -1.0912 8 1 6.2799 -0.5263 -0.8863 9 6 5.9059 -2.6143 -1.1249 10 7 5.0043 -3.5389 -1.3739 11 14 7.6824 -3.1016 -0.8153 12 1 8.4927 -1.8835 -0.5605 13 1 7.7512 -3.9984 0.3662 14 1 8.2160 -3.8103 -2.0064 15 6 4.2633 1.3330 -2.3200 16 8 4.0632 2.5292 -2.2782 17 6 4.8273 0.7129 -3.5562 18 8 5.0230 -0.4841 -3.5998 19 7 5.1188 1.4827 -4.6234 20 6 5.5487 0.8916 -5.8149 21 6 6.3411 -0.2538 -5.7994 22 7 6.7220 -0.7857 -6.9488 23 6 6.3664 -0.2438 -8.0963 24 7 5.6225 0.8428 -8.1534 25 6 5.2005 1.4357 -7.0491 26 1 -0.3633 0.5137 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 3.8508 0.5684 0.8426 32 1 3.9785 2.1765 0.0903 33 1 3.4659 -1.3609 -0.5929 34 1 3.8063 -1.2236 -2.3346 35 1 5.2620 -4.4737 -1.3972 36 1 5.0304 2.4469 -4.5646 37 1 6.6364 -0.7033 -4.8628 38 1 6.6941 -0.7035 -9.0170 39 1 4.5909 2.3255 -7.1033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116727265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -37.071364 kcal Electronic energy + Delta-G solvation = -25838.138589 eV Core-core repulsion = 21975.726646 eV Total energy + Delta-G solvation = -3862.411942 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25207 -40.07933 -38.33532 -37.38844 -35.77762 -34.54285 -33.60681 -32.54948 -30.42523 -29.98841 -27.11849 -26.25715 -25.17605 -24.64000 -23.45276 -22.88316 -21.59601 -19.66555 -17.84598 -17.53174 -17.27316 -16.69173 -16.66527 -16.37765 -15.80668 -15.46349 -15.22298 -14.75857 -14.66769 -14.38211 -14.22548 -13.64514 -13.57457 -13.39654 -13.21409 -12.34935 -12.13699 -11.87817 -11.74231 -11.65584 -11.36282 -11.04379 -10.94668 -10.92005 -10.83052 -10.72279 -10.46945 -10.00537 -9.67983 -9.47927 -9.26399 -8.79937 -8.44850 -8.27241 -7.91564 -6.01039 -4.03652 0.85059 1.12994 1.98320 2.65329 3.31187 3.39630 3.41153 3.64923 3.89055 3.90607 4.06282 4.21115 4.34685 4.45266 4.57042 4.83412 5.00745 5.27977 5.35610 5.36552 5.39275 5.51604 5.54574 5.55924 5.77732 5.86387 5.91411 6.08413 6.17707 6.60486 6.63097 6.98846 7.16641 7.36187 7.41812 7.50834 7.87379 8.04278 8.12198 8.16224 8.22590 8.52958 8.96329 9.58610 11.07632 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.010200 B = 0.005757 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.479820 B = 4862.695806 C = 6768.547220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.047 3.953 4 C 0.118 3.882 5 N -0.547 5.547 6 C 0.231 3.769 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.890 3.110 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.282 1.282 15 C 0.508 3.492 16 O -0.563 6.563 17 C 0.488 3.512 18 O -0.424 6.424 19 N -0.654 5.654 20 C 0.057 3.943 21 C 0.149 3.851 22 N -0.498 5.498 23 C 0.262 3.738 24 N -0.505 5.505 25 C 0.119 3.881 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.261 0.739 36 H 0.420 0.580 37 H 0.188 0.812 38 H 0.195 0.805 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 10.595 -4.196 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.031 4.031 4 C -0.005 4.005 5 N -0.276 5.276 6 C 0.113 3.887 7 C -0.556 4.556 8 H 0.071 0.929 9 C -0.132 4.132 10 N -0.525 5.525 11 Si 0.718 3.282 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.208 1.208 15 C 0.290 3.710 16 O -0.445 6.445 17 C 0.270 3.730 18 O -0.290 6.290 19 N -0.304 5.304 20 C -0.044 4.044 21 C -0.020 4.020 22 N -0.212 5.212 23 C -0.026 4.026 24 N -0.219 5.219 25 C -0.051 4.051 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.258 0.742 37 H 0.205 0.795 38 H 0.211 0.789 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.797 9.448 -4.945 11.320 hybrid contribution 0.396 0.651 0.971 1.234 sum -3.401 10.099 -3.973 11.373 Atomic orbital electron populations 1.22693 0.81898 1.02574 0.99211 1.88068 1.18893 1.27190 1.95224 1.22980 0.94717 0.85207 1.00146 1.21558 0.91679 0.99818 0.87445 1.48247 1.59172 1.11092 1.09122 1.19997 0.97664 0.70734 1.00331 1.21244 0.93643 0.92221 1.48526 0.92856 1.24788 0.97080 0.96323 0.95028 1.69933 1.33137 1.00673 1.48734 0.86585 0.85263 0.78530 0.77854 1.19980 1.21070 1.20830 1.19593 0.80365 0.86262 0.84770 1.90656 1.55869 1.14807 1.83217 1.20569 0.80449 0.87439 0.84534 1.91011 1.45026 1.13283 1.79725 1.43107 1.66387 1.11477 1.09394 1.19620 0.98301 0.98544 0.87890 1.23816 0.89013 0.91194 0.97962 1.68497 1.22412 1.31556 0.98694 1.24880 0.92018 0.89179 0.96484 1.68340 1.11797 1.10562 1.31176 1.23068 0.96140 0.99762 0.86090 0.94598 0.94605 0.89734 0.92784 0.93147 0.88653 0.89042 0.93510 0.92135 0.92903 0.74214 0.79528 0.78862 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.37 9.65 -35.23 -0.34 -6.71 16 3 C 0.05 0.70 6.28 37.16 0.23 0.94 16 4 C 0.12 1.98 5.74 -4.04 -0.02 1.96 16 5 N -0.55 -11.10 2.44 -175.60 -0.43 -11.53 16 6 C 0.23 5.63 4.52 -5.20 -0.02 5.61 16 7 C -0.52 -13.69 7.79 -34.44 -0.27 -13.96 16 8 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 11 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.51 9.84 7.67 -11.63 -0.09 9.75 16 16 O -0.56 -10.58 16.12 5.49 0.09 -10.49 16 17 C 0.49 9.21 7.59 -11.63 -0.09 9.12 16 18 O -0.42 -9.49 9.60 5.48 0.05 -9.44 16 19 N -0.65 -9.63 5.35 -10.11 -0.05 -9.68 16 20 C 0.06 0.84 6.35 -83.45 -0.53 0.31 16 21 C 0.15 2.53 9.98 -16.98 -0.17 2.36 16 22 N -0.50 -8.09 10.43 -14.42 -0.15 -8.24 16 23 C 0.26 3.54 12.28 -92.15 -1.13 2.41 16 24 N -0.51 -6.77 10.43 -14.42 -0.15 -6.92 16 25 C 0.12 1.48 11.26 -16.97 -0.19 1.29 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 1.61 8.07 -51.93 -0.42 1.19 16 32 H 0.09 1.39 7.50 -51.93 -0.39 1.00 16 33 H 0.05 1.22 7.25 -51.93 -0.38 0.85 16 34 H 0.06 1.62 5.84 -51.93 -0.30 1.32 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.42 5.07 8.30 -40.82 -0.34 4.73 16 37 H 0.19 3.59 6.29 -52.49 -0.33 3.26 16 38 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -32.10 340.29 -6.07 -38.17 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.66 Total: 5.00 kcal Atomic # 6 Polarization: 24.44 SS G_CDS: -1.27 Total: 23.17 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.05 Total: -61.18 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.20 Total: -26.64 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.10 -6.07 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116727265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.099 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds