Wall clock time and date at job start Tue Mar 31 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00007 * 2 1 4 4 H 1.09000 * 110.78291 * 26.76209 * 3 2 1 5 5 C 1.54320 * 110.72290 * 263.52000 * 3 2 1 6 6 N 1.47019 * 107.27341 * 219.44316 * 5 3 2 7 7 C 1.36941 * 125.64919 * 178.89603 * 6 5 3 8 8 H 1.07998 * 119.99902 * 180.02562 * 7 6 5 9 9 C 1.38813 * 119.99632 * 0.02877 * 7 6 5 10 10 N 1.31612 * 120.00186 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99684 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47071 * 90.00001 * 11 9 7 13 13 H 1.48496 * 109.47339 * 210.00184 * 11 9 7 14 14 H 1.48509 * 109.47070 * 330.00236 * 11 9 7 15 15 C 1.47466 * 108.72123 * 358.97912 * 6 5 3 16 16 C 1.54908 * 104.81477 * 24.06735 * 15 6 5 17 17 H 1.08997 * 111.00554 * 81.13751 * 16 15 6 18 18 N 1.46499 * 111.00287 * 204.95578 * 16 15 6 19 19 C 1.34784 * 119.99893 * 270.41588 * 18 16 15 20 20 O 1.21283 * 119.99649 * 0.02562 * 19 18 16 21 21 C 1.50697 * 119.99774 * 179.72962 * 19 18 16 22 22 O 1.42905 * 109.47007 * 179.97438 * 21 19 18 23 23 C 1.42897 * 114.00262 * 179.97438 * 22 21 19 24 24 C 1.52999 * 109.47174 * 179.97438 * 23 22 21 25 25 F 1.39898 * 109.47084 * 300.00579 * 24 23 22 26 26 F 1.39903 * 109.47081 * 60.00480 * 24 23 22 27 27 H 1.08992 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47380 * 300.00434 * 1 2 3 29 29 H 1.09007 * 109.46628 * 60.00007 * 1 2 3 30 30 H 1.09010 * 109.87881 * 338.86344 * 5 3 2 31 31 H 1.08995 * 109.88303 * 99.86998 * 5 3 2 32 32 H 0.96999 * 120.00175 * 180.02562 * 10 9 7 33 33 H 1.09000 * 110.34474 * 265.24786 * 15 6 5 34 34 H 1.09002 * 110.40707 * 142.91625 * 15 6 5 35 35 H 0.97005 * 120.00261 * 90.41800 * 18 16 15 36 36 H 1.09001 * 109.46809 * 299.99238 * 21 19 18 37 37 H 1.08993 * 109.47525 * 59.99679 * 21 19 18 38 38 H 1.09002 * 109.47065 * 300.00389 * 23 22 21 39 39 H 1.08996 * 109.46799 * 60.00186 * 23 22 21 40 40 H 1.08998 * 109.46744 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3363 2.0289 0.4589 5 6 2.3811 1.7381 -1.4341 6 7 3.6685 2.4440 -1.3580 7 6 4.3549 2.9691 -2.4203 8 1 5.2974 3.4712 -2.2592 9 6 3.8390 2.8561 -3.7041 10 7 2.6907 2.2439 -3.9003 11 14 4.7749 3.5731 -5.1530 12 1 5.6988 2.5481 -5.7016 13 1 3.8141 3.9880 -6.2065 14 1 5.5559 4.7533 -4.7028 15 6 4.0998 2.4913 0.0514 16 6 3.3816 1.2958 0.7257 17 1 3.9155 0.3639 0.5396 18 7 3.2167 1.5252 2.1632 19 6 4.1768 1.1308 3.0231 20 8 5.1773 0.5864 2.6067 21 6 4.0098 1.3724 4.5012 22 8 5.1511 0.8683 5.1981 23 6 5.0936 1.0485 6.6145 24 6 6.3597 0.4742 7.2534 25 9 6.4522 -0.8905 6.9602 26 9 7.4812 1.1377 6.7441 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 2.4769 0.8601 -2.0731 31 1 1.6141 2.4031 -1.8308 32 1 2.3304 2.1646 -4.7974 33 1 3.7888 3.4292 0.5116 34 1 5.1811 2.3733 0.1222 35 1 2.4165 1.9610 2.4961 36 1 3.9143 2.4423 4.6859 37 1 3.1141 0.8613 4.8540 38 1 5.0211 2.1118 6.8428 39 1 4.2201 0.5312 7.0113 40 1 6.3155 0.6113 8.3338 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213213795.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:13 Heat of formation + Delta-G solvation = -189.721684 kcal Electronic energy + Delta-G solvation = -25747.704717 eV Core-core repulsion = 21427.984174 eV Total energy + Delta-G solvation = -4319.720543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.138 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -49.11517 -47.15491 -39.86581 -38.47578 -37.55524 -35.89193 -34.06598 -31.87020 -30.82992 -29.02531 -28.02709 -26.53625 -26.12230 -24.12209 -23.26354 -20.99932 -20.54480 -19.98439 -18.17250 -17.78187 -17.74247 -17.04015 -16.63635 -16.30509 -16.19066 -16.11857 -15.40849 -14.77348 -14.53655 -14.47430 -14.22366 -13.95554 -13.91140 -13.50420 -13.25474 -13.10347 -12.87380 -12.59102 -12.26611 -12.19371 -11.89512 -11.56913 -11.28260 -11.23831 -11.01521 -10.79791 -10.76126 -10.21491 -10.14882 -10.01739 -9.79885 -9.70194 -9.14370 -8.78022 -8.58847 -6.88984 -5.73093 -3.08112 2.55694 2.71722 3.38912 3.42019 3.46885 3.48342 3.72330 3.86251 4.11411 4.11498 4.49729 4.56845 4.72373 4.78957 4.83286 4.89772 5.05153 5.12321 5.35656 5.48166 5.54748 5.62855 5.69478 5.82780 5.89848 6.03374 6.14218 6.46214 6.50071 6.63737 6.84329 7.24174 7.47237 7.61827 7.71002 7.85567 8.20181 8.36177 9.17855 9.77815 10.40637 11.38394 Molecular weight = 308.14amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.002977 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.625488 B = 9404.539010 C =10577.773301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.134 3.866 17 H 0.106 0.894 18 N -0.715 5.715 19 C 0.512 3.488 20 O -0.512 6.512 21 C 0.045 3.955 22 O -0.350 6.350 23 C 0.006 3.994 24 C 0.273 3.727 25 F -0.198 7.198 26 F -0.198 7.198 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.253 0.747 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.396 0.604 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -0.774 23.702 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.029 3.971 17 H 0.124 0.876 18 N -0.368 5.368 19 C 0.296 3.704 20 O -0.385 6.385 21 C -0.034 4.034 22 O -0.267 6.267 23 C -0.072 4.072 24 C 0.219 3.781 25 F -0.179 7.179 26 F -0.179 7.179 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.229 0.771 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.222 -1.442 23.041 23.310 hybrid contribution -0.467 0.906 -0.523 1.146 sum -3.689 -0.536 22.518 22.825 Atomic orbital electron populations 1.22710 0.81743 1.02080 0.99714 1.87923 1.19074 1.27551 1.95035 1.23845 0.92838 0.84059 0.99539 0.91862 1.21557 0.88257 0.97301 0.88939 1.44266 1.21334 1.66522 1.00680 1.19090 1.02339 1.29550 0.84693 0.90103 1.24818 0.97417 1.00698 0.97406 1.69932 1.19190 1.47287 1.20617 0.86070 0.78624 0.78606 0.82174 1.21461 1.21683 1.20627 1.21840 0.97914 0.93745 0.86223 1.22424 0.96516 1.01163 0.77006 0.87574 1.45811 1.21837 1.61847 1.07265 1.20049 0.83772 0.79312 0.87301 1.90781 1.28317 1.40635 1.78785 1.22285 0.89752 1.00020 0.91388 1.88124 1.40775 1.81623 1.16207 1.23755 0.97604 1.02078 0.83772 1.21975 0.83354 0.74562 0.98217 1.93029 1.96532 1.33089 1.95296 1.93034 1.54816 1.80326 1.89715 0.90225 0.94878 0.93624 0.91921 0.93309 0.93658 0.95908 0.93044 0.77058 0.89890 0.90030 0.89950 0.90010 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.88 10.43 -35.23 -0.37 -7.24 16 3 C 0.06 1.05 3.08 -24.90 -0.08 0.97 16 4 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 5 C 0.16 4.00 5.15 -3.07 -0.02 3.98 16 6 N -0.60 -15.54 3.40 -170.04 -0.58 -16.12 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 10 N -0.92 -27.07 10.31 55.49 0.57 -26.50 16 11 Si 0.92 22.32 29.55 -169.99 -5.02 17.29 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.13 2.80 6.93 -2.51 -0.02 2.79 16 16 C 0.13 2.52 3.09 -65.78 -0.20 2.31 16 17 H 0.11 2.32 7.63 -51.93 -0.40 1.92 16 18 N -0.71 -10.12 5.21 -51.73 -0.27 -10.39 16 19 C 0.51 7.81 7.91 -10.98 -0.09 7.72 16 20 O -0.51 -10.67 16.19 -14.35 -0.23 -10.90 16 21 C 0.05 0.46 6.42 36.00 0.23 0.69 16 22 O -0.35 -4.40 9.76 -55.14 -0.54 -4.93 16 23 C 0.01 0.04 6.16 37.16 0.23 0.27 16 24 C 0.27 2.12 5.63 37.16 0.21 2.33 16 25 F -0.20 -2.24 17.28 2.25 0.04 -2.20 16 26 F -0.20 -2.26 17.28 2.25 0.04 -2.22 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 1.74 7.29 -51.92 -0.38 1.36 16 31 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 4.05 8.54 -40.82 -0.35 3.70 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 347.91 15.07 5.24 5.24 Total: -1.00 -37.50 347.91 -5.69 -43.18 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.68 Total: -0.92 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 1.11 Total: 15.70 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.27 Total: -53.00 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.14 Total: -23.08 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.08 Total: -4.42 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.50 -5.69 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213213795.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.540 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds