Wall clock time and date at job start Tue Mar 31 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32025 * 118.91532 * 2 1 4 4 C 1.32424 * 121.03320 * 179.97438 * 3 2 1 5 5 O 1.35565 * 120.52817 * 180.02562 * 4 3 2 6 6 C 1.40367 * 118.94052 * 0.02562 * 4 3 2 7 7 O 1.35711 * 120.96542 * 179.97438 * 6 4 3 8 8 C 1.42903 * 117.00032 * 271.15789 * 7 6 4 9 9 H 1.09000 * 110.88655 * 332.12507 * 8 7 6 10 10 C 1.55157 * 111.00220 * 208.24051 * 8 7 6 11 11 C 1.54323 * 102.94064 * 206.38566 * 10 8 7 12 12 N 1.47024 * 107.39996 * 22.12013 * 11 10 8 13 13 C 1.36937 * 125.64586 * 181.10064 * 12 11 10 14 14 H 1.07998 * 119.99957 * 180.02562 * 13 12 11 15 15 C 1.38815 * 119.99938 * 0.02562 * 13 12 11 16 16 N 1.31618 * 120.00198 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46876 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46797 * 120.00325 * 17 15 13 20 20 H 1.48494 * 109.47273 * 240.00262 * 17 15 13 21 21 C 1.47746 * 108.53029 * 1.17863 * 12 11 10 22 22 C 1.39677 * 118.06920 * 0.26790 * 6 4 3 23 23 C 1.48062 * 120.57540 * 179.72450 * 22 6 4 24 24 N 1.34777 * 120.00641 * 185.14249 * 23 22 6 25 25 O 1.21531 * 119.99987 * 5.14379 * 23 22 6 26 26 N 1.31351 * 118.91840 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47490 * 89.99761 * 1 2 3 28 28 H 1.09009 * 109.46873 * 209.99956 * 1 2 3 29 29 H 1.08997 * 109.47216 * 329.99226 * 1 2 3 30 30 H 0.96693 * 114.00478 * 269.97990 * 5 4 3 31 31 H 1.09007 * 110.71993 * 88.02679 * 10 8 7 32 32 H 1.09001 * 110.72521 * 324.75403 * 10 8 7 33 33 H 1.09001 * 109.88000 * 141.61487 * 11 10 8 34 34 H 1.09001 * 109.88194 * 262.62349 * 11 10 8 35 35 H 0.96996 * 120.00285 * 179.97438 * 16 15 13 36 36 H 1.08991 * 110.28836 * 216.94572 * 21 12 11 37 37 H 1.08996 * 110.42998 * 94.62710 * 21 12 11 38 38 H 0.97006 * 119.99726 * 0.02562 * 24 23 22 39 39 H 0.96997 * 120.00732 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1557 0.0000 4 6 3.4687 1.2046 0.0005 5 8 4.1137 2.3970 0.0010 6 6 4.1929 0.0022 0.0005 7 8 5.5500 0.0044 0.0005 8 6 6.1987 0.0311 -1.2725 9 1 5.5738 -0.4307 -2.0369 10 6 7.5893 -0.6535 -1.2025 11 6 8.3715 0.0355 -2.3405 12 7 7.7159 1.3243 -2.6069 13 6 8.0939 2.2294 -3.5625 14 1 7.5449 3.1521 -3.6795 15 6 9.1826 1.9610 -4.3807 16 7 9.8514 0.8363 -4.2385 17 14 9.6977 3.1954 -5.6848 18 1 8.7895 4.3694 -5.6412 19 1 11.0911 3.6380 -5.4244 20 1 9.6224 2.5602 -7.0249 21 6 6.5841 1.4780 -1.6698 22 6 3.4762 -1.1967 -0.0058 23 6 4.1839 -2.4972 -0.0123 24 7 3.4850 -3.6443 -0.1229 25 8 5.3951 -2.5304 0.0822 26 7 2.1422 -1.1497 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 4.3015 2.7430 -0.8821 31 1 7.5018 -1.7241 -1.3880 32 1 8.0638 -0.4655 -0.2394 33 1 9.4040 0.2013 -2.0331 34 1 8.3466 -0.5852 -3.2362 35 1 10.6119 0.6486 -4.8105 36 1 5.7476 1.9709 -2.1651 37 1 6.8922 2.0435 -0.7905 38 1 2.5183 -3.6179 -0.1987 39 1 3.9486 -4.4963 -0.1275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234470210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:52 Heat of formation + Delta-G solvation = -26.200969 kcal Electronic energy + Delta-G solvation = -26042.162919 eV Core-core repulsion = 22180.222352 eV Total energy + Delta-G solvation = -3861.940566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72518 -39.31376 -38.81067 -37.58106 -36.29205 -34.17982 -33.11927 -32.55427 -31.92227 -29.33799 -28.22467 -27.11269 -25.80289 -24.45815 -23.18579 -21.31461 -20.55049 -20.14429 -19.06411 -18.86131 -17.83200 -17.73013 -17.02666 -16.39742 -16.08511 -15.12562 -14.82210 -14.55113 -14.49968 -14.43775 -14.22336 -13.88834 -13.26330 -13.03684 -12.84172 -12.59188 -12.42845 -12.27981 -11.92633 -11.56341 -11.31035 -10.97953 -10.87193 -10.83151 -10.59740 -10.30851 -10.15352 -10.03539 -9.86325 -9.84517 -9.74422 -9.20519 -9.05427 -8.64498 -6.90956 -5.75867 -3.11084 0.15122 0.45095 2.52232 2.84002 3.13552 3.31669 3.37355 3.42581 3.45198 3.56079 3.61424 4.18849 4.45623 4.59244 4.74543 4.98659 5.23275 5.26014 5.33353 5.39238 5.41792 5.50721 5.66091 5.71156 5.87483 6.19621 6.30487 6.35978 6.50678 6.55912 6.62537 6.70577 7.06798 7.17502 7.50357 7.56059 7.59661 7.65178 7.79054 8.04008 8.18951 9.15120 9.74802 10.40051 11.35429 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.004085 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.467758 B = 6852.793182 C = 7793.621991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.324 3.676 3 N -0.511 5.511 4 C 0.354 3.646 5 O -0.459 6.459 6 C 0.051 3.949 7 O -0.290 6.290 8 C 0.083 3.917 9 H 0.064 0.936 10 C -0.126 4.126 11 C 0.176 3.824 12 N -0.602 5.602 13 C -0.232 4.232 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.119 3.881 22 C 0.111 3.889 23 C 0.572 3.428 24 N -0.836 5.836 25 O -0.492 6.492 26 N -0.490 5.490 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.411 0.589 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.253 0.747 36 H 0.030 0.970 37 H 0.038 0.962 38 H 0.409 0.591 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.869 -6.614 8.001 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 N -0.238 5.238 4 C 0.162 3.838 5 O -0.267 6.267 6 C -0.002 4.002 7 O -0.202 6.202 8 C 0.028 3.972 9 H 0.082 0.918 10 C -0.164 4.164 11 C 0.052 3.948 12 N -0.330 5.330 13 C -0.360 4.360 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.566 5.566 17 Si 0.744 3.256 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.217 1.217 21 C -0.008 4.008 22 C -0.035 4.035 23 C 0.353 3.647 24 N -0.401 5.401 25 O -0.363 6.363 26 N -0.211 5.211 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.273 0.727 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.239 0.761 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -18.611 -6.470 8.643 21.516 hybrid contribution 0.864 0.504 -1.339 1.671 sum -17.747 -5.966 7.304 20.097 Atomic orbital electron populations 1.20596 0.84642 1.04519 1.04278 1.22942 0.98059 0.81719 0.91612 1.67731 1.09377 1.31821 1.14912 1.20051 0.86492 0.86111 0.91125 1.84759 1.74919 1.32478 1.34557 1.20631 0.87613 0.91585 1.00372 1.86131 1.10828 1.92937 1.30354 1.23867 0.94097 0.98211 0.81066 0.91780 1.22947 0.92677 0.99612 1.01207 1.21240 0.94649 0.85696 0.93245 1.44421 1.31029 1.19454 1.38071 1.19085 1.10501 0.98004 1.08406 0.90265 1.24829 0.98047 0.97641 0.99742 1.69971 1.21841 1.23701 1.41099 0.86021 0.78276 0.80098 0.81198 1.20465 1.21619 1.21710 1.22032 0.91504 0.93315 0.93932 1.22072 0.89496 0.94482 0.97474 1.17540 0.86552 0.83144 0.77491 1.43570 1.12195 1.07857 1.76506 1.90973 1.12306 1.86351 1.46664 1.68128 1.07640 1.30911 1.14410 0.89242 0.89240 0.89275 0.72671 0.91061 0.91153 0.93273 0.93230 0.93648 0.95153 0.94406 0.76075 0.76094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 36.01 0.37 -0.18 16 2 C 0.32 3.68 7.64 -157.37 -1.20 2.48 16 3 N -0.51 -6.84 10.33 -10.64 -0.11 -6.95 16 4 C 0.35 5.24 7.86 -16.50 -0.13 5.11 16 5 O -0.46 -6.51 13.06 -30.65 -0.40 -6.91 16 6 C 0.05 0.81 5.69 -38.24 -0.22 0.59 16 7 O -0.29 -5.33 8.17 -46.45 -0.38 -5.71 16 8 C 0.08 1.61 3.04 -24.58 -0.07 1.53 16 9 H 0.06 1.24 7.94 -51.93 -0.41 0.83 16 10 C -0.13 -2.62 6.42 -24.90 -0.16 -2.78 16 11 C 0.18 4.40 5.37 -3.06 -0.02 4.38 16 12 N -0.60 -15.46 3.41 -169.82 -0.58 -16.04 16 13 C -0.23 -6.41 10.29 -15.06 -0.15 -6.57 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 16 N -0.92 -26.95 10.31 55.49 0.57 -26.37 16 17 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 C 0.12 2.47 6.30 -2.35 -0.01 2.46 16 22 C 0.11 1.57 6.79 -82.58 -0.56 1.01 16 23 C 0.57 7.92 8.08 -12.23 -0.10 7.83 16 24 N -0.84 -7.52 8.86 30.58 0.27 -7.25 16 25 O -0.49 -8.58 15.29 -15.93 -0.24 -8.82 16 26 N -0.49 -5.78 9.59 -7.34 -0.07 -5.85 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.41 4.55 7.66 45.56 0.35 4.89 16 31 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.05 1.34 7.51 -51.93 -0.39 0.95 16 34 H 0.05 1.34 7.37 -51.93 -0.38 0.96 16 35 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.03 0.57 7.10 -51.93 -0.37 0.20 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.41 2.83 8.22 -40.82 -0.34 2.49 16 39 H 0.41 2.92 8.93 -40.82 -0.36 2.56 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -34.33 332.76 -7.28 -41.62 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -3.98 Total: 4.78 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: -2.35 Total: 15.60 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.08 Total: -62.47 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.02 Total: -21.44 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.33 -7.28 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234470210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.416 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds