Wall clock time and date at job start Tue Mar 31 2020 03:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86807 * 120.00126 * 2 1 4 4 H 1.48499 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46906 * 299.99551 * 3 2 1 6 6 H 1.48498 * 109.47086 * 59.99748 * 3 2 1 7 7 C 1.38949 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99963 * 180.02562 * 7 2 1 9 9 N 1.37087 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00528 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99439 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00431 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47240 * 179.97438 * 12 10 9 14 14 C 1.47906 * 110.99894 * 69.87800 * 13 12 10 15 15 C 1.53987 * 107.05800 * 145.84555 * 14 13 12 16 16 C 1.54594 * 105.14061 * 358.76974 * 15 14 13 17 17 H 1.09002 * 110.72325 * 96.58280 * 16 15 14 18 18 C 1.50698 * 110.72541 * 219.68613 * 16 15 14 19 19 C 1.38232 * 120.37720 * 33.54543 * 18 16 15 20 20 C 1.39383 * 118.46865 * 179.97438 * 19 18 16 21 21 O 1.35518 * 120.47143 * 180.02562 * 20 19 18 22 22 N 1.32771 * 119.04997 * 0.02562 * 20 19 18 23 23 C 1.32283 * 120.66342 * 359.97438 * 22 20 19 24 24 O 1.35455 * 119.16359 * 180.02562 * 23 22 20 25 25 N 1.32313 * 121.66863 * 0.28266 * 23 22 20 26 26 C 1.48536 * 111.00091 * 187.27098 * 13 12 10 27 27 H 0.97002 * 119.99903 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99917 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47151 * 59.99732 * 12 10 9 30 30 H 1.09001 * 109.46958 * 300.00045 * 12 10 9 31 31 H 1.09002 * 109.91575 * 26.48559 * 14 13 12 32 32 H 1.09000 * 110.07971 * 265.28855 * 14 13 12 33 33 H 1.09002 * 110.30727 * 239.85634 * 15 14 13 34 34 H 1.08994 * 110.39402 * 117.73738 * 15 14 13 35 35 H 1.08004 * 120.76281 * 359.97438 * 19 18 16 36 36 H 0.96693 * 114.00445 * 269.98110 * 21 20 19 37 37 H 0.96696 * 113.99987 * 90.00484 * 24 23 22 38 38 H 1.08996 * 110.66406 * 81.84177 * 26 13 12 39 39 H 1.09003 * 110.66482 * 318.71853 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 -0.0005 14 6 2.9038 -6.0743 1.2960 15 6 3.1542 -7.5695 1.5657 16 6 2.5219 -8.3081 0.3638 17 1 3.2766 -8.5373 -0.3886 18 6 1.8246 -9.5648 0.8170 19 6 1.2038 -9.6136 2.0511 20 6 0.5704 -10.7960 2.4300 21 8 -0.0512 -10.8884 3.6306 22 7 0.5848 -11.8304 1.5977 23 6 1.1900 -11.7440 0.4246 24 8 1.1856 -12.8178 -0.4010 25 7 1.8039 -10.6370 0.0395 26 6 1.4986 -7.2779 -0.1766 27 1 -0.4850 0.8401 -0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6173 -4.9204 -0.8903 30 1 0.6167 -4.9208 0.8897 31 1 2.2842 -5.6527 2.0875 32 1 3.8536 -5.5420 1.2450 33 1 2.6696 -7.8729 2.4937 34 1 4.2240 -7.7727 1.6144 35 1 1.2095 -8.7553 2.7066 36 1 0.5195 -11.2004 4.3461 37 1 0.4330 -12.8445 -1.0075 38 1 1.2877 -7.4614 -1.2301 39 1 0.5807 -7.3030 0.4106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307891345.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:46 Heat of formation + Delta-G solvation = -80.732763 kcal Electronic energy + Delta-G solvation = -24581.227359 eV Core-core repulsion = 20716.922117 eV Total energy + Delta-G solvation = -3864.305242 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.53570 -40.63355 -39.37116 -39.20344 -37.81303 -35.94774 -34.97780 -33.41808 -33.09910 -31.43060 -29.93755 -28.39608 -26.25846 -25.33518 -24.72082 -22.35145 -21.98957 -20.95346 -20.08487 -19.77144 -19.60375 -19.06093 -17.69567 -17.32304 -16.93029 -16.67586 -16.57289 -16.30984 -16.23686 -15.69374 -15.51462 -14.95611 -14.46273 -14.28507 -14.14372 -13.66107 -13.52764 -13.44440 -13.22561 -12.98594 -12.90930 -12.71418 -12.38735 -12.35425 -12.24265 -12.10368 -12.02677 -11.60086 -11.48335 -11.40052 -10.52497 -10.38144 -10.29991 -9.98369 -9.29990 -8.44831 -5.92947 -0.40726 -0.25746 1.37645 1.42908 1.56814 1.78353 2.08577 2.22573 2.30000 2.55122 2.73164 3.13606 3.22351 3.38667 3.60258 3.76117 3.76852 3.80934 4.10798 4.24931 4.29971 4.34974 4.36195 4.41287 4.53611 4.54994 4.69758 4.85908 5.00305 5.02301 5.11867 5.25913 5.43280 5.69582 5.86396 5.96792 6.09638 6.45436 6.48102 6.63273 6.81820 7.15784 7.59513 8.15511 8.72938 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.031597 B = 0.002449 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.955791 B =11428.553467 C =11638.321224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.443 3.557 11 O -0.615 6.615 12 C 0.049 3.951 13 N -0.514 5.514 14 C 0.044 3.956 15 C -0.115 4.115 16 C -0.038 4.038 17 H 0.105 0.895 18 C 0.226 3.774 19 C -0.241 4.241 20 C 0.387 3.613 21 O -0.477 6.477 22 N -0.575 5.575 23 C 0.516 3.484 24 O -0.465 6.465 25 N -0.544 5.544 26 C 0.053 3.947 27 H 0.277 0.723 28 H 0.396 0.604 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.182 0.818 36 H 0.433 0.567 37 H 0.433 0.567 38 H 0.092 0.908 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 -21.855 5.666 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.230 3.770 11 O -0.500 6.500 12 C -0.083 4.083 13 N -0.238 5.238 14 C -0.084 4.084 15 C -0.153 4.153 16 C -0.058 4.058 17 H 0.124 0.876 18 C 0.081 3.919 19 C -0.264 4.264 20 C 0.200 3.800 21 O -0.288 6.288 22 N -0.313 5.313 23 C 0.211 3.789 24 O -0.271 6.271 25 N -0.272 5.272 26 C -0.076 4.076 27 H 0.086 0.914 28 H 0.229 0.771 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.200 0.800 36 H 0.297 0.703 37 H 0.297 0.703 38 H 0.110 0.890 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.132 -22.416 4.639 22.919 hybrid contribution -0.851 1.311 0.997 1.854 sum -1.984 -21.105 5.636 21.934 Atomic orbital electron populations 1.69676 1.06798 1.29136 1.50710 1.26010 0.96523 1.02337 0.96480 0.84895 0.78062 0.77267 0.78270 1.19808 1.19746 1.19619 1.19669 0.92632 0.83987 1.49547 0.90369 1.41938 1.09297 1.04706 1.65499 1.20750 0.88291 0.85866 0.82074 1.90490 1.15677 1.87863 1.55991 1.21939 0.93784 0.88814 1.03723 1.64380 1.24912 1.01507 1.32998 1.22790 0.99505 0.96758 0.89347 1.22640 1.02825 0.92297 0.97556 1.20959 0.97263 0.88304 0.99279 0.87643 1.21260 0.90060 0.92125 0.88469 1.22989 1.01458 1.01686 1.00252 1.19227 0.86061 0.87307 0.87409 1.84699 1.40459 1.88204 1.15476 1.67433 1.22328 1.34586 1.06927 1.19946 0.88069 0.84923 0.85962 1.84669 1.52577 1.38665 1.51221 1.67837 1.22208 0.99904 1.37217 1.23256 0.95109 0.86835 1.02351 0.91383 0.77057 0.87345 0.90745 0.93766 0.92065 0.88227 0.89367 0.80048 0.70291 0.70342 0.88984 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 13.05 21.66 0.28 -49.17 16 2 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 3 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.33 -18.52 9.68 84.04 0.81 -17.70 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.58 -29.21 5.29 -306.99 -1.62 -30.83 16 10 C 0.44 20.66 7.58 87.65 0.66 21.33 16 11 O -0.61 -33.42 14.66 -3.07 -0.05 -33.47 16 12 C 0.05 1.62 5.25 85.55 0.45 2.07 16 13 N -0.51 -15.59 4.96 -887.58 -4.40 -19.99 16 14 C 0.04 1.23 5.75 86.44 0.50 1.73 16 15 C -0.11 -2.14 6.38 31.47 0.20 -1.94 16 16 C -0.04 -0.74 3.47 -10.34 -0.04 -0.78 16 17 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 18 C 0.23 4.23 5.89 42.46 0.25 4.48 16 19 C -0.24 -3.67 9.04 22.54 0.20 -3.47 16 20 C 0.39 6.56 7.83 84.83 0.66 7.22 16 21 O -0.48 -5.95 13.57 -88.21 -1.20 -7.14 16 22 N -0.57 -12.08 10.49 -426.38 -4.47 -16.55 16 23 C 0.52 10.87 8.71 180.58 1.57 12.44 16 24 O -0.46 -8.05 13.64 -87.52 -1.19 -9.24 16 25 N -0.54 -11.88 10.40 -301.71 -3.14 -15.01 16 26 C 0.05 1.15 5.97 86.65 0.52 1.67 16 27 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 29 H 0.11 3.20 8.11 -2.39 -0.02 3.18 16 30 H 0.07 2.13 7.82 -2.39 -0.02 2.11 16 31 H 0.04 1.21 7.57 -2.39 -0.02 1.20 16 32 H 0.06 2.15 7.39 -2.39 -0.02 2.14 16 33 H 0.10 1.31 5.51 -2.39 -0.01 1.30 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.18 1.94 6.32 -2.91 -0.02 1.92 16 36 H 0.43 0.74 9.06 -74.06 -0.67 0.07 16 37 H 0.43 2.92 9.06 -74.06 -0.67 2.25 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.06 1.18 7.92 -2.39 -0.02 1.16 16 Total: -1.00 -76.58 334.53 -8.42 -85.00 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.93 Total: 24.88 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 6.27 Total: 26.76 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -13.35 Total: -131.56 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -2.44 Total: -49.85 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -76.58 -8.42 -85.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307891345.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.268 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds