Wall clock time and date at job start Tue Mar 31 2020 03:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99666 * 2 1 4 4 H 1.48494 * 109.47461 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.47225 * 119.99735 * 3 2 1 6 6 H 1.48504 * 109.47239 * 239.99634 * 3 2 1 7 7 C 1.37881 * 120.00215 * 180.27097 * 2 1 3 8 8 H 1.07994 * 119.99946 * 179.72293 * 7 2 1 9 9 C 1.50700 * 119.99705 * 359.72740 * 7 2 1 10 10 N 1.46502 * 109.46810 * 179.97438 * 9 7 2 11 11 C 1.34988 * 125.96761 * 124.72035 * 10 9 7 12 12 C 1.35216 * 107.87343 * 179.84022 * 11 10 9 13 13 C 1.40459 * 107.86626 * 0.42050 * 12 11 10 14 14 N 1.39935 * 125.97700 * 179.72186 * 13 12 11 15 15 C 1.34769 * 120.00453 * 359.97438 * 14 13 12 16 16 O 1.21384 * 119.99758 * 0.02562 * 15 14 13 17 17 C 1.49341 * 120.00067 * 180.02562 * 15 14 13 18 18 O 1.21360 * 120.00206 * 353.54909 * 17 15 14 19 19 N 1.34784 * 119.99917 * 173.54113 * 17 15 14 20 20 C 1.47151 * 120.98414 * 181.30844 * 19 17 15 21 21 C 1.53706 * 108.16020 * 129.43372 * 20 19 17 22 22 O 1.42966 * 109.14834 * 52.54383 * 21 20 19 23 23 C 1.42965 * 114.16446 * 297.29095 * 22 21 20 24 24 C 1.47148 * 120.97988 * 1.60086 * 19 17 15 25 25 N 1.31267 * 108.03988 * 359.73688 * 13 12 11 26 26 H 0.97002 * 119.99656 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47536 * 300.00025 * 9 7 2 28 28 H 1.09002 * 109.47228 * 60.00065 * 9 7 2 29 29 H 1.07995 * 126.06151 * 359.96141 * 11 10 9 30 30 H 1.08005 * 126.06995 * 180.12885 * 12 11 10 31 31 H 0.97006 * 119.99637 * 180.02562 * 14 13 12 32 32 H 1.08994 * 109.68655 * 249.21860 * 20 19 17 33 33 H 1.09006 * 109.67540 * 9.77438 * 20 19 17 34 34 H 1.08996 * 109.65955 * 292.57832 * 21 20 19 35 35 H 1.09004 * 109.48544 * 172.39847 * 21 20 19 36 36 H 1.09004 * 109.50941 * 302.65414 * 23 22 21 37 37 H 1.08999 * 109.55207 * 182.53151 * 23 22 21 38 38 H 1.09002 * 109.68373 * 350.23058 * 24 19 17 39 39 H 1.08999 * 109.68583 * 110.78717 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0056 8 1 3.0846 -1.1940 -0.0102 9 6 1.2511 -2.4991 -0.0056 10 7 2.2032 -3.6126 -0.0128 11 6 2.2495 -4.6219 0.8824 12 6 3.2627 -5.4444 0.5285 13 6 3.8667 -4.9133 -0.6230 14 7 4.9582 -5.4612 -1.3060 15 6 5.5250 -6.6019 -0.8658 16 8 5.0883 -7.1543 0.1230 17 6 6.6903 -7.1864 -1.5944 18 8 7.0533 -6.7018 -2.6461 19 7 7.3388 -8.2519 -1.0837 20 6 8.5070 -8.8274 -1.7689 21 6 9.6450 -8.9618 -0.7444 22 8 9.1654 -9.6742 0.3985 23 6 8.1089 -9.0133 1.0992 24 6 6.8957 -8.8779 0.1720 25 7 3.2282 -3.8128 -0.9462 26 1 -0.4850 -0.8401 0.0004 27 1 0.6281 -2.5590 0.8868 28 1 0.6208 -2.5548 -0.8932 29 1 1.5924 -4.7508 1.7298 30 1 3.5585 -6.3468 1.0430 31 1 5.3074 -5.0196 -2.0960 32 1 8.2516 -9.8086 -2.1689 33 1 8.8178 -8.1691 -2.5802 34 1 9.9836 -7.9714 -0.4404 35 1 10.4748 -9.5086 -1.1924 36 1 8.4419 -8.0230 1.4099 37 1 7.8328 -9.5968 1.9775 38 1 6.1389 -8.2533 0.6466 39 1 6.4808 -9.8642 -0.0358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319106359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:52 Heat of formation + Delta-G solvation = -1.169401 kcal Electronic energy + Delta-G solvation = -24858.505560 eV Core-core repulsion = 20997.650444 eV Total energy + Delta-G solvation = -3860.855116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49096 -40.57829 -39.26874 -38.39188 -35.79267 -34.67703 -33.73541 -31.81646 -31.06033 -29.57578 -28.67600 -26.73036 -25.30905 -24.38511 -23.10550 -22.21896 -21.18909 -20.21789 -19.75144 -18.01080 -17.40720 -17.28146 -16.69603 -16.55667 -16.47824 -15.79540 -15.57451 -15.41961 -15.03912 -14.89858 -14.37239 -14.16507 -13.83889 -13.46445 -13.42158 -12.88578 -12.61352 -12.53729 -12.39514 -11.87605 -11.79793 -11.43517 -11.24272 -11.13077 -10.89191 -10.67576 -10.63988 -10.19275 -10.12149 -9.30397 -9.10419 -9.06089 -8.63377 -8.39933 -7.72863 -6.63679 -4.38294 1.00023 1.80276 2.48464 2.82911 2.85978 3.35082 3.37148 3.41522 3.48591 3.53411 3.57450 4.07724 4.32148 4.37025 4.55262 4.66420 4.79863 4.86899 5.09526 5.11027 5.19627 5.26114 5.34222 5.38694 5.52154 5.63278 5.78850 5.97404 6.20379 6.30910 6.46480 6.63734 6.65541 6.69256 7.05143 7.12129 7.41741 7.58779 7.69328 7.77278 8.26741 8.36428 8.54682 9.29861 10.74152 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.002668 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.969690 B =10492.200594 C =10827.643302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.610 4.610 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.312 5.312 11 C 0.054 3.946 12 C -0.282 4.282 13 C 0.249 3.751 14 N -0.593 5.593 15 C 0.519 3.481 16 O -0.491 6.491 17 C 0.518 3.482 18 O -0.515 6.515 19 N -0.584 5.584 20 C 0.073 3.927 21 C 0.049 3.951 22 O -0.383 6.383 23 C 0.047 3.953 24 C 0.018 3.982 25 N -0.289 5.289 26 H 0.267 0.733 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.171 0.829 30 H 0.163 0.837 31 H 0.425 0.575 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.165 0.835 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.035 -18.966 0.926 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.649 4.649 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.093 5.093 11 C -0.096 4.096 12 C -0.313 4.313 13 C -0.004 4.004 14 N -0.240 5.240 15 C 0.300 3.700 16 O -0.367 6.367 17 C 0.300 3.700 18 O -0.391 6.391 19 N -0.319 5.319 20 C -0.049 4.049 21 C -0.028 4.028 22 O -0.301 6.301 23 C -0.030 4.030 24 C -0.103 4.103 25 N -0.120 5.120 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.188 0.812 30 H 0.181 0.819 31 H 0.263 0.737 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.181 0.819 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.630 -16.548 0.275 22.090 hybrid contribution 0.297 -1.966 0.039 1.989 sum 14.926 -18.515 0.314 23.784 Atomic orbital electron populations 1.70862 1.06781 1.30442 1.45741 1.25933 0.96291 1.02835 0.93022 0.83420 0.74829 0.74521 0.76902 1.20481 1.21205 1.21067 1.22092 0.95401 0.90377 1.57000 0.91779 1.19829 0.86245 0.82732 0.98202 1.48897 1.23069 1.19472 1.17900 1.22597 1.00354 0.89955 0.96701 1.21516 1.02240 1.06305 1.01280 1.19013 0.91595 0.94780 0.94987 1.42012 1.28751 1.23322 1.29924 1.19926 0.84217 0.81092 0.84767 1.90286 1.61832 1.59048 1.25536 1.19769 0.83756 0.81038 0.85454 1.90792 1.65915 1.60321 1.22030 1.47917 1.29765 1.29180 1.25029 1.22556 0.85645 1.00188 0.96545 1.23051 0.95569 0.97783 0.86437 1.87963 1.53195 1.47308 1.41635 1.23064 0.86745 0.98314 0.94859 1.23950 1.00131 1.01870 0.84307 1.77436 1.03149 1.15731 1.15730 0.92261 0.93400 0.94561 0.81162 0.81924 0.73749 0.89889 0.87714 0.92394 0.87377 0.92529 0.87291 0.81904 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.65 55.43 0.76 -25.13 16 2 C 0.02 0.66 5.46 -17.82 -0.10 0.57 16 3 Si 1.08 24.59 29.90 -169.99 -5.08 19.51 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.61 -16.83 9.24 -34.44 -0.32 -17.15 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.08 5.57 -5.19 -0.03 6.05 16 10 N -0.31 -6.98 3.67 -62.56 -0.23 -7.21 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 12 C -0.28 -5.07 9.60 -39.82 -0.38 -5.45 16 13 C 0.25 4.77 8.10 -154.55 -1.25 3.52 16 14 N -0.59 -9.27 5.43 -11.58 -0.06 -9.34 16 15 C 0.52 7.19 7.77 -11.64 -0.09 7.10 16 16 O -0.49 -6.91 10.16 5.47 0.06 -6.85 16 17 C 0.52 6.49 7.77 -11.63 -0.09 6.40 16 18 O -0.52 -7.35 15.96 5.49 0.09 -7.26 16 19 N -0.58 -5.97 3.01 -172.57 -0.52 -6.49 16 20 C 0.07 0.59 6.66 -3.32 -0.02 0.56 16 21 C 0.05 0.35 7.00 37.52 0.26 0.61 16 22 O -0.38 -3.40 10.74 -35.23 -0.38 -3.78 16 23 C 0.05 0.37 6.98 37.31 0.26 0.63 16 24 C 0.02 0.16 6.38 -3.54 -0.02 0.14 16 25 N -0.29 -6.51 12.42 31.41 0.39 -6.12 16 26 H 0.27 7.46 7.22 -40.82 -0.29 7.16 16 27 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 28 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 29 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 30 H 0.16 2.65 5.91 -52.48 -0.31 2.34 16 31 H 0.42 6.15 8.31 -40.82 -0.34 5.81 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.86 7.09 -51.93 -0.37 0.49 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.16 1.67 3.96 -56.38 -0.22 1.45 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -32.38 331.41 -6.50 -38.87 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.53 Total: 5.03 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.98 Total: 3.78 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.33 Total: -54.29 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.24 Total: -17.89 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.38 -6.50 -38.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319106359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.703 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds