Wall clock time and date at job start Tue Mar 31 2020 03:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99666 * 2 1 4 4 H 1.48494 * 109.47461 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.47225 * 119.99735 * 3 2 1 6 6 H 1.48504 * 109.47239 * 239.99634 * 3 2 1 7 7 C 1.37881 * 120.00215 * 180.27097 * 2 1 3 8 8 H 1.07994 * 119.99946 * 179.72293 * 7 2 1 9 9 C 1.50700 * 119.99705 * 359.72740 * 7 2 1 10 10 N 1.46502 * 109.46810 * 179.97438 * 9 7 2 11 11 C 1.34988 * 125.96761 * 124.72035 * 10 9 7 12 12 C 1.35216 * 107.87343 * 179.84022 * 11 10 9 13 13 C 1.40459 * 107.86626 * 0.42050 * 12 11 10 14 14 N 1.39935 * 125.97700 * 179.72186 * 13 12 11 15 15 C 1.34769 * 120.00453 * 359.97438 * 14 13 12 16 16 O 1.21384 * 119.99758 * 0.02562 * 15 14 13 17 17 C 1.49341 * 120.00067 * 180.02562 * 15 14 13 18 18 O 1.21360 * 120.00206 * 353.54909 * 17 15 14 19 19 N 1.34784 * 119.99917 * 173.54113 * 17 15 14 20 20 C 1.47151 * 120.98414 * 181.30844 * 19 17 15 21 21 C 1.53706 * 108.16020 * 129.43372 * 20 19 17 22 22 O 1.42966 * 109.14834 * 52.54383 * 21 20 19 23 23 C 1.42965 * 114.16446 * 297.29095 * 22 21 20 24 24 C 1.47148 * 120.97988 * 1.60086 * 19 17 15 25 25 N 1.31267 * 108.03988 * 359.73688 * 13 12 11 26 26 H 0.97002 * 119.99656 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47536 * 300.00025 * 9 7 2 28 28 H 1.09002 * 109.47228 * 60.00065 * 9 7 2 29 29 H 1.07995 * 126.06151 * 359.96141 * 11 10 9 30 30 H 1.08005 * 126.06995 * 180.12885 * 12 11 10 31 31 H 0.97006 * 119.99637 * 180.02562 * 14 13 12 32 32 H 1.08994 * 109.68655 * 249.21860 * 20 19 17 33 33 H 1.09006 * 109.67540 * 9.77438 * 20 19 17 34 34 H 1.08996 * 109.65955 * 292.57832 * 21 20 19 35 35 H 1.09004 * 109.48544 * 172.39847 * 21 20 19 36 36 H 1.09004 * 109.50941 * 302.65414 * 23 22 21 37 37 H 1.08999 * 109.55207 * 182.53151 * 23 22 21 38 38 H 1.09002 * 109.68373 * 350.23058 * 24 19 17 39 39 H 1.08999 * 109.68583 * 110.78717 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0056 8 1 3.0846 -1.1940 -0.0102 9 6 1.2511 -2.4991 -0.0056 10 7 2.2032 -3.6126 -0.0128 11 6 2.2495 -4.6219 0.8824 12 6 3.2627 -5.4444 0.5285 13 6 3.8667 -4.9133 -0.6230 14 7 4.9582 -5.4612 -1.3060 15 6 5.5250 -6.6019 -0.8658 16 8 5.0883 -7.1543 0.1230 17 6 6.6903 -7.1864 -1.5944 18 8 7.0533 -6.7018 -2.6461 19 7 7.3388 -8.2519 -1.0837 20 6 8.5070 -8.8274 -1.7689 21 6 9.6450 -8.9618 -0.7444 22 8 9.1654 -9.6742 0.3985 23 6 8.1089 -9.0133 1.0992 24 6 6.8957 -8.8779 0.1720 25 7 3.2282 -3.8128 -0.9462 26 1 -0.4850 -0.8401 0.0004 27 1 0.6281 -2.5590 0.8868 28 1 0.6208 -2.5548 -0.8932 29 1 1.5924 -4.7508 1.7298 30 1 3.5585 -6.3468 1.0430 31 1 5.3074 -5.0196 -2.0960 32 1 8.2516 -9.8086 -2.1689 33 1 8.8178 -8.1691 -2.5802 34 1 9.9836 -7.9714 -0.4404 35 1 10.4748 -9.5086 -1.1924 36 1 8.4419 -8.0230 1.4099 37 1 7.8328 -9.5968 1.9775 38 1 6.1389 -8.2533 0.6466 39 1 6.4808 -9.8642 -0.0358 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319106359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:51 Heat of formation + Delta-G solvation = -24.440683 kcal Electronic energy + Delta-G solvation = -24859.514679 eV Core-core repulsion = 20997.650444 eV Total energy + Delta-G solvation = -3861.864235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.67887 -41.86935 -40.22872 -39.33833 -36.94666 -35.97554 -35.39311 -32.78950 -32.45537 -31.11146 -29.53414 -28.38610 -26.48738 -25.25180 -24.78685 -23.25846 -22.48210 -21.53266 -20.89388 -19.28985 -19.00313 -18.46037 -18.06084 -17.50991 -17.24847 -16.94892 -16.58152 -16.24765 -16.19662 -15.99618 -15.68637 -15.54074 -15.26924 -15.02451 -14.43693 -14.18167 -13.97830 -13.95521 -13.47259 -13.27796 -13.11025 -12.63004 -12.40519 -12.39110 -12.17482 -11.96375 -11.88836 -11.65418 -11.33308 -11.04516 -10.70497 -10.33332 -9.94414 -9.84302 -9.32418 -8.79362 -6.56915 -0.10160 0.69679 1.03045 1.50923 1.56917 1.61769 1.63023 1.78838 2.13662 2.27208 2.47961 2.86364 2.93586 3.00410 3.69013 3.78537 3.90394 4.05998 4.07455 4.18173 4.22615 4.37634 4.52525 4.58549 4.66483 4.70822 4.75735 4.76131 4.79857 4.87529 5.00585 5.22120 5.51709 5.66509 5.73066 5.88363 5.91321 6.07941 6.24234 6.38019 6.40294 6.61518 6.84751 7.18241 8.57992 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.002668 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.969690 B =10492.200594 C =10827.643302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.118 2.882 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.623 4.623 8 H 0.045 0.955 9 C 0.258 3.742 10 N -0.339 5.339 11 C 0.059 3.941 12 C -0.281 4.281 13 C 0.259 3.741 14 N -0.597 5.597 15 C 0.523 3.477 16 O -0.490 6.490 17 C 0.521 3.479 18 O -0.537 6.537 19 N -0.577 5.577 20 C 0.070 3.930 21 C 0.050 3.950 22 O -0.394 6.394 23 C 0.049 3.951 24 C 0.019 3.981 25 N -0.341 5.341 26 H 0.262 0.738 27 H 0.059 0.941 28 H 0.017 0.983 29 H 0.208 0.792 30 H 0.183 0.817 31 H 0.428 0.572 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.134 0.866 36 H 0.053 0.947 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.564 -20.481 1.817 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.939 3.061 4 H -0.200 1.200 5 H -0.195 1.195 6 H -0.203 1.203 7 C -0.661 4.661 8 H 0.063 0.937 9 C 0.139 3.861 10 N -0.121 5.121 11 C -0.089 4.089 12 C -0.312 4.312 13 C 0.004 3.996 14 N -0.246 5.246 15 C 0.305 3.695 16 O -0.365 6.365 17 C 0.302 3.698 18 O -0.414 6.414 19 N -0.311 5.311 20 C -0.052 4.052 21 C -0.027 4.027 22 O -0.312 6.312 23 C -0.028 4.028 24 C -0.102 4.102 25 N -0.172 5.172 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.225 0.775 30 H 0.200 0.800 31 H 0.266 0.734 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.072 0.928 37 H 0.147 0.853 38 H 0.170 0.830 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.186 -18.137 1.191 24.338 hybrid contribution -0.085 -1.705 -0.216 1.721 sum 16.101 -19.842 0.975 25.571 Atomic orbital electron populations 1.70952 1.07434 1.30241 1.47251 1.27228 0.96433 1.06008 0.92086 0.82897 0.74168 0.71247 0.77786 1.20010 1.19512 1.20285 1.22292 0.94702 0.92184 1.56945 0.93652 1.19467 0.86352 0.82664 0.97618 1.48647 1.23717 1.20252 1.19499 1.23294 1.00565 0.88409 0.96594 1.21800 1.01816 1.06703 1.00833 1.19330 0.91497 0.93737 0.94993 1.42138 1.28243 1.24033 1.30146 1.20273 0.84288 0.80318 0.84619 1.90301 1.61873 1.58866 1.25462 1.19460 0.83466 0.81668 0.85165 1.90790 1.66494 1.61265 1.22891 1.48084 1.29691 1.28065 1.25241 1.22780 0.85044 1.00555 0.96774 1.23187 0.95672 0.98122 0.85727 1.87957 1.53312 1.47846 1.42133 1.23125 0.85976 0.98638 0.95057 1.23962 1.00553 1.01815 0.83861 1.77342 1.04596 1.17963 1.17303 0.92874 0.92322 0.96500 0.77525 0.79955 0.73369 0.88469 0.87927 0.92620 0.84785 0.92827 0.85316 0.83041 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.35 13.65 21.45 0.29 -53.05 16 2 C -0.02 -0.97 5.46 84.66 0.46 -0.51 16 3 Si 1.12 49.37 29.90 68.60 2.05 51.42 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.62 -34.96 9.24 25.60 0.24 -34.72 16 8 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 9 C 0.26 12.92 5.57 85.63 0.48 13.39 16 10 N -0.34 -15.30 3.67 -351.85 -1.29 -16.60 16 11 C 0.06 2.13 11.43 83.51 0.95 3.09 16 12 C -0.28 -9.71 9.60 22.11 0.21 -9.50 16 13 C 0.26 9.85 8.10 133.40 1.08 10.93 16 14 N -0.60 -18.53 5.43 -308.91 -1.68 -20.21 16 15 C 0.52 13.97 7.77 87.24 0.68 14.65 16 16 O -0.49 -12.97 10.16 -3.35 -0.03 -13.00 16 17 C 0.52 12.49 7.77 87.23 0.68 13.16 16 18 O -0.54 -14.97 15.96 -3.28 -0.05 -15.02 16 19 N -0.58 -10.75 3.01 -818.26 -2.47 -13.22 16 20 C 0.07 0.97 6.66 86.49 0.58 1.55 16 21 C 0.05 0.58 7.00 72.22 0.51 1.08 16 22 O -0.39 -5.95 10.74 -148.98 -1.60 -7.55 16 23 C 0.05 0.65 6.98 72.08 0.50 1.16 16 24 C 0.02 0.29 6.38 86.35 0.55 0.84 16 25 N -0.34 -15.62 12.42 -54.54 -0.68 -16.30 16 26 H 0.26 14.89 7.22 -92.71 -0.67 14.22 16 27 H 0.06 2.78 7.94 -2.39 -0.02 2.76 16 28 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 29 H 0.21 5.57 8.06 -2.91 -0.02 5.55 16 30 H 0.18 5.51 5.91 -2.91 -0.02 5.49 16 31 H 0.43 12.55 8.31 -92.70 -0.77 11.78 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.52 7.09 -2.38 -0.02 1.50 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.15 2.81 3.96 -72.96 -0.29 2.52 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.67 331.41 1.62 -68.06 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.16 Total: 20.35 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 6.92 Total: 15.13 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.82 Total: -119.38 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.69 Total: -35.57 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Total: -69.67 1.62 -68.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319106359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.615 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds