Wall clock time and date at job start Tue Mar 31 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.51551 * 2 1 4 4 C 1.52880 * 109.58310 * 239.97883 * 2 1 3 5 5 N 1.47149 * 108.60698 * 187.92904 * 4 2 1 6 6 C 1.34780 * 120.97689 * 230.50377 * 5 4 2 7 7 O 1.21359 * 120.00319 * 7.62759 * 6 5 4 8 8 C 1.49315 * 119.99665 * 187.62912 * 6 5 4 9 9 O 1.21399 * 119.99788 * 6.66572 * 8 6 5 10 10 N 1.34774 * 119.99765 * 186.93785 * 8 6 5 11 11 C 1.40291 * 120.00039 * 179.72686 * 10 8 6 12 12 C 1.40730 * 126.09971 * 359.68928 * 11 10 8 13 13 N 1.30872 * 108.37715 * 179.81434 * 12 11 10 14 14 N 1.40064 * 108.43397 * 0.44435 * 13 12 11 15 15 C 1.37295 * 126.05334 * 179.71444 * 14 13 12 16 16 H 1.07999 * 120.00043 * 186.19353 * 15 14 13 17 17 C 1.39010 * 120.00063 * 6.18896 * 15 14 13 18 18 N 1.31280 * 120.00336 * 353.71353 * 17 15 14 19 19 Si 1.86799 * 119.99817 * 173.71216 * 17 15 14 20 20 H 1.48498 * 109.47455 * 94.97394 * 19 17 15 21 21 H 1.48503 * 109.47175 * 214.97391 * 19 17 15 22 22 H 1.48499 * 109.47368 * 334.97265 * 19 17 15 23 23 C 1.35783 * 126.10418 * 180.02562 * 11 10 8 24 24 C 1.47153 * 118.03860 * 50.22860 * 5 4 2 25 25 C 1.53293 * 108.38210 * 309.71250 * 24 5 4 26 26 O 1.42963 * 109.22220 * 52.30573 * 25 24 5 27 27 H 1.09003 * 109.47069 * 299.90151 * 1 2 3 28 28 H 1.09006 * 109.46678 * 59.89595 * 1 2 3 29 29 H 1.09000 * 109.47648 * 179.89935 * 1 2 3 30 30 H 1.08998 * 109.61518 * 68.10489 * 4 2 1 31 31 H 1.09006 * 109.52231 * 307.69282 * 4 2 1 32 32 H 0.96997 * 120.00432 * 359.72040 * 10 8 6 33 33 H 1.08002 * 125.80835 * 0.02562 * 12 11 10 34 34 H 0.96993 * 120.00408 * 180.02562 * 18 17 15 35 35 H 1.08000 * 126.25232 * 359.97438 * 23 11 10 36 36 H 1.08993 * 109.68219 * 69.44128 * 24 5 4 37 37 H 1.09003 * 109.68110 * 189.95957 * 24 5 4 38 38 H 1.09004 * 109.51186 * 172.22663 * 25 24 5 39 39 H 1.08997 * 109.51601 * 292.37876 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0424 -0.7206 -1.2471 5 7 3.5011 -0.8769 -1.1330 6 6 4.3193 -0.5045 -2.1373 7 8 3.8723 0.0928 -3.0945 8 6 5.7758 -0.8269 -2.0720 9 8 6.2029 -1.5274 -1.1772 10 7 6.6170 -0.3357 -3.0034 11 6 7.9864 -0.6339 -2.9389 12 6 8.6179 -1.4232 -1.9598 13 7 9.8963 -1.4767 -2.2344 14 7 10.1335 -0.7191 -3.3883 15 6 11.3515 -0.5255 -3.9917 16 1 11.4400 0.1592 -4.8222 17 6 12.4709 -1.2107 -3.5335 18 7 12.3917 -1.9469 -2.4495 19 14 14.0878 -1.0837 -4.4603 20 1 14.9263 -0.0210 -3.8497 21 1 14.8038 -2.3827 -4.3867 22 1 13.8187 -0.7467 -5.8813 23 6 8.9399 -0.2073 -3.8064 24 6 4.0406 -1.4460 0.1122 25 6 3.4312 -0.6850 1.2952 26 8 2.0075 -0.6759 1.1659 27 1 -0.3633 0.5123 0.8909 28 1 -0.3633 0.5155 -0.8891 29 1 -0.3634 -1.0276 -0.0018 30 1 1.8043 -0.1325 -2.1334 31 1 1.5727 -1.7016 -1.3198 32 1 6.2758 0.2239 -3.7184 33 1 8.1299 -1.9057 -1.1258 34 1 13.1728 -2.4247 -2.1295 35 1 8.7822 0.4218 -4.6700 36 1 3.7755 -2.5011 0.1786 37 1 5.1252 -1.3384 0.1253 38 1 3.7090 -1.1777 2.2270 39 1 3.8030 0.3396 1.2994 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319351040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:33 Heat of formation + Delta-G solvation = -6.322611 kcal Electronic energy + Delta-G solvation = -25105.349408 eV Core-core repulsion = 21244.270832 eV Total energy + Delta-G solvation = -3861.078576 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95098 -39.82078 -38.89125 -37.89433 -35.32431 -34.14662 -33.25475 -33.15715 -30.38357 -28.96580 -28.24830 -27.27063 -25.20718 -23.78292 -23.31467 -21.40666 -21.02914 -19.76272 -19.53595 -17.81997 -17.41261 -16.96790 -16.51781 -16.03843 -15.71474 -15.52086 -15.21699 -15.10592 -14.79135 -14.26955 -14.10837 -13.78930 -13.44383 -13.20001 -13.04326 -12.93487 -12.59934 -12.22451 -12.04433 -11.77911 -11.51343 -11.45390 -11.32964 -11.17407 -10.90460 -10.87461 -10.57812 -10.37995 -10.28036 -9.28887 -8.97667 -8.89915 -8.72786 -8.18614 -6.84800 -6.65739 -4.32752 1.53101 2.36377 2.89345 3.01238 3.06594 3.22000 3.43856 3.59426 3.64698 3.80750 4.29922 4.38362 4.48494 4.72630 4.77635 4.85827 4.89748 4.92602 5.03925 5.20259 5.31916 5.34854 5.44358 5.59047 5.66713 5.82618 5.91544 6.11363 6.17597 6.29510 6.68357 6.83876 6.87027 6.95121 7.01884 7.11329 7.61147 7.76958 8.00968 8.11942 8.40320 8.62866 9.25745 9.53903 10.30340 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.043114 B = 0.002680 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.292233 B =10445.589883 C =10949.584320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.063 0.937 4 C 0.079 3.921 5 N -0.590 5.590 6 C 0.518 3.482 7 O -0.528 6.528 8 C 0.485 3.515 9 O -0.516 6.516 10 N -0.578 5.578 11 C -0.073 4.073 12 C -0.025 4.025 13 N -0.261 5.261 14 N -0.137 5.137 15 C -0.322 4.322 16 H 0.119 0.881 17 C 0.047 3.953 18 N -0.766 5.766 19 Si 0.935 3.065 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.263 1.263 23 C -0.076 4.076 24 C 0.040 3.960 25 C 0.047 3.953 26 O -0.381 6.381 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.410 0.590 33 H 0.178 0.822 34 H 0.276 0.724 35 H 0.149 0.851 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.109 0.891 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.840 3.337 3.348 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.016 3.984 3 H 0.081 0.919 4 C -0.043 4.043 5 N -0.325 5.325 6 C 0.301 3.699 7 O -0.405 6.405 8 C 0.267 3.733 9 O -0.395 6.395 10 N -0.219 5.219 11 C -0.178 4.178 12 C -0.200 4.200 13 N -0.092 5.092 14 N 0.096 4.904 15 C -0.455 4.455 16 H 0.136 0.864 17 C -0.171 4.171 18 N -0.392 5.392 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.227 4.227 24 C -0.082 4.082 25 C -0.030 4.030 26 O -0.300 6.300 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.245 0.755 33 H 0.195 0.805 34 H 0.087 0.913 35 H 0.167 0.833 36 H 0.096 0.904 37 H 0.169 0.831 38 H 0.127 0.873 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.605 2.464 4.082 16.318 hybrid contribution -0.199 0.733 -1.227 1.443 sum -15.804 3.198 2.855 16.375 Atomic orbital electron populations 1.21728 0.92125 1.03279 1.02897 1.22375 0.95612 0.95450 0.84995 0.91897 1.22361 0.79669 1.02262 1.00035 1.47898 1.06334 1.61632 1.16594 1.20263 0.87723 0.79191 0.82704 1.90719 1.77234 1.39580 1.32940 1.19590 0.86294 0.83447 0.83965 1.90404 1.76652 1.38524 1.33955 1.42170 1.05715 1.47094 1.26964 1.17253 0.81566 1.14574 1.04452 1.24147 0.91822 1.03027 1.01034 1.78263 1.13654 1.16931 1.00329 1.44572 1.04416 1.26512 1.14870 1.19935 0.82359 1.27589 1.15569 0.86393 1.25674 1.00427 0.95152 0.95829 1.70202 1.30474 1.21443 1.17111 0.85795 0.79960 0.78524 0.79817 1.19573 1.19964 1.18654 1.21315 0.86061 1.11323 1.04044 1.23518 1.04983 0.97920 0.81731 1.23089 0.80567 1.00387 0.98953 1.87948 1.21510 1.77401 1.43104 0.91352 0.90711 0.91488 0.87969 0.90280 0.75517 0.80502 0.91301 0.83308 0.90445 0.83131 0.87303 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.57 37.16 0.36 -0.64 16 2 C 0.07 0.71 3.39 -26.79 -0.09 0.62 16 3 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.08 0.85 5.92 -3.75 -0.02 0.83 16 5 N -0.59 -7.78 3.03 -173.09 -0.52 -8.31 16 6 C 0.52 8.06 7.75 -11.65 -0.09 7.97 16 7 O -0.53 -8.81 15.97 5.49 0.09 -8.72 16 8 C 0.49 8.57 7.71 -11.65 -0.09 8.48 16 9 O -0.52 -9.76 10.35 5.45 0.06 -9.71 16 10 N -0.58 -10.63 5.45 -10.45 -0.06 -10.69 16 11 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 12 C -0.02 -0.61 10.85 -17.02 -0.18 -0.80 16 13 N -0.26 -7.32 10.42 30.81 0.32 -7.00 16 14 N -0.14 -3.66 3.73 -11.40 -0.04 -3.70 16 15 C -0.32 -8.29 10.24 -14.82 -0.15 -8.44 16 16 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -20.79 11.84 55.50 0.66 -20.13 16 19 Si 0.94 18.41 29.56 -169.99 -5.02 13.39 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 23 C -0.08 -1.75 11.49 -16.38 -0.19 -1.93 16 24 C 0.04 0.48 6.13 -3.53 -0.02 0.46 16 25 C 0.05 0.49 6.98 37.31 0.26 0.75 16 26 O -0.38 -4.21 10.39 -35.23 -0.37 -4.57 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.10 1.10 7.06 -51.93 -0.37 0.73 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.41 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.18 4.24 5.92 -52.49 -0.31 3.93 16 34 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.15 2.87 8.06 -52.49 -0.42 2.44 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.15 2.11 4.49 -53.98 -0.24 1.87 16 38 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -31.58 329.58 -5.43 -37.01 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.61 Total: 11.31 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.90 Total: 6.16 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.35 Total: -49.83 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.22 Total: -23.01 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.58 -5.43 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319351040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.685 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds