Wall clock time and date at job start Tue Mar 31 2020 05:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35911 * 116.99858 * 2 1 4 4 C 1.39136 * 120.47231 * 179.97438 * 3 2 1 5 5 C 1.38545 * 118.37332 * 179.69707 * 4 3 2 6 6 C 1.38251 * 119.21857 * 0.27640 * 5 4 3 7 7 C 1.50702 * 119.55436 * 180.02562 * 6 5 4 8 8 N 1.46507 * 109.46834 * 94.99950 * 7 6 5 9 9 C 1.34776 * 119.99714 * 180.02562 * 8 7 6 10 10 O 1.21588 * 119.99916 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99790 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47392 * 179.97438 * 12 11 9 14 14 O 1.21300 * 119.99533 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00301 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00098 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00330 * 359.97438 * 16 15 13 18 18 C 1.38957 * 120.00136 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00063 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47244 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46858 * 119.99866 * 20 18 16 23 23 H 1.48502 * 109.47107 * 239.99961 * 20 18 16 24 24 N 1.31842 * 120.88969 * 359.97438 * 6 5 4 25 25 C 1.31846 * 121.78127 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47071 * 300.00270 * 1 2 3 28 28 H 1.09000 * 109.47025 * 60.00190 * 1 2 3 29 29 H 1.08002 * 120.81609 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.38410 * 180.25316 * 5 4 3 31 31 H 1.08996 * 109.47327 * 214.99939 * 7 6 5 32 32 H 1.09001 * 109.47063 * 335.00742 * 7 6 5 33 33 H 0.96990 * 120.00257 * 0.02562 * 8 7 6 34 34 H 0.96990 * 120.00182 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.47306 * 300.00235 * 12 11 9 36 36 H 1.09003 * 109.46967 * 60.00166 * 12 11 9 37 37 H 0.97002 * 120.00675 * 359.97438 * 15 13 12 38 38 H 0.96991 * 120.00270 * 179.97438 * 19 18 16 39 39 H 1.07995 * 119.65565 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0181 2.5519 -0.0059 6 6 3.2079 3.6721 -0.0068 7 6 3.8343 5.0427 -0.0144 8 7 3.9223 5.5317 -1.3927 9 6 4.4531 6.7447 -1.6447 10 8 4.8594 7.4328 -0.7283 11 7 4.5336 7.1948 -2.9125 12 6 5.1100 8.5134 -3.1865 13 6 5.0835 8.7749 -4.6703 14 8 4.6274 7.9418 -5.4248 15 7 5.5665 9.9343 -5.1590 16 6 5.5418 10.1724 -6.5090 17 1 5.1357 9.4307 -7.1809 18 6 6.0393 11.3680 -7.0128 19 7 6.5330 12.2707 -6.1954 20 14 6.0063 11.6921 -8.8522 21 1 5.4039 10.5274 -9.5494 22 1 5.1960 12.9058 -9.1265 23 1 7.3923 11.9008 -9.3430 24 7 1.8944 3.5574 -0.0021 25 6 1.3002 2.3805 0.0031 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0433 0.4030 0.0014 30 1 5.0932 2.6552 -0.0098 31 1 3.2222 5.7253 0.5749 32 1 4.8343 4.9875 0.4159 33 1 3.5986 4.9827 -2.1237 34 1 4.2092 6.6460 -3.6435 35 1 4.5284 9.2783 -2.6719 36 1 6.1403 8.5404 -2.8316 37 1 5.9309 10.6007 -4.5557 38 1 6.8805 13.1051 -6.5471 39 1 0.2216 2.3265 0.0064 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325034288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:57 Heat of formation + Delta-G solvation = -64.492678 kcal Electronic energy + Delta-G solvation = -23509.734767 eV Core-core repulsion = 19646.133748 eV Total energy + Delta-G solvation = -3863.601019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 3.34 seconds Orbital eigenvalues (eV) -41.15169 -39.78846 -38.71790 -38.12461 -34.90829 -34.33455 -33.60617 -32.88035 -31.40930 -31.16677 -28.31232 -27.69567 -26.06297 -24.33654 -23.72073 -22.29164 -20.69950 -19.55576 -18.69217 -18.47568 -17.99085 -17.52981 -16.65132 -16.35702 -15.83030 -15.52260 -15.44980 -14.79800 -14.70152 -14.63480 -14.38085 -14.11797 -13.93999 -13.67895 -13.40879 -13.38123 -12.80458 -12.48558 -12.27186 -12.14358 -11.96599 -11.83427 -11.61378 -11.12632 -10.39344 -10.30871 -10.17167 -10.05856 -9.84988 -9.62468 -9.14772 -8.87643 -8.59608 -8.56616 -8.07535 -6.49260 -3.91102 0.60910 0.80635 2.64611 2.80742 3.11832 3.23804 3.30485 3.42886 3.44037 3.78047 3.88515 4.11655 4.16326 4.27306 4.46675 4.53745 4.62449 4.65847 4.89059 4.93610 4.99240 5.11208 5.19566 5.30493 5.43216 5.61936 5.72921 5.95489 6.02680 6.04685 6.11523 6.47127 6.67706 6.79171 7.11423 7.48380 7.54021 7.95189 8.26261 8.47875 8.82337 9.07175 9.42320 9.90291 10.67765 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.002007 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.161044 B =13948.587679 C =14550.257583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.081 3.919 4 C -0.110 4.110 5 C -0.109 4.109 6 C 0.072 3.928 7 C 0.198 3.802 8 N -0.743 5.743 9 C 0.707 3.293 10 O -0.597 6.597 11 N -0.724 5.724 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.894 5.894 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.280 1.280 24 N -0.431 5.431 25 C 0.020 3.980 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.397 0.603 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.273 0.727 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 -21.920 14.115 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.033 3.967 4 C -0.136 4.136 5 C -0.129 4.129 6 C -0.067 4.067 7 C 0.074 3.926 8 N -0.400 5.400 9 C 0.407 3.593 10 O -0.476 6.476 11 N -0.381 5.381 12 C 0.000 4.000 13 C 0.215 3.785 14 O -0.485 6.485 15 N -0.185 5.185 16 C -0.433 4.433 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.140 5.140 25 C -0.139 4.139 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.231 0.769 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.696 -21.057 14.401 26.952 hybrid contribution 0.124 -0.558 -1.203 1.332 sum -8.572 -21.616 13.199 26.738 Atomic orbital electron populations 1.23165 0.77691 1.04563 1.01819 1.86090 1.21918 1.26004 1.88331 1.20150 0.93348 0.85838 0.97361 1.20969 0.91672 0.98988 1.01989 1.21945 1.01840 0.91442 0.97718 1.21154 0.89161 0.95616 1.00753 1.19799 1.00237 0.89138 0.83465 1.44950 1.67892 1.18560 1.08614 1.15785 0.78924 0.81228 0.83391 1.90909 1.55227 1.57516 1.43962 1.44755 1.66393 1.20230 1.06741 1.20786 0.99554 0.84238 0.95387 1.19781 0.85384 0.84441 0.88907 1.90493 1.52154 1.46589 1.59232 1.41792 1.52685 1.15303 1.08702 1.19777 1.38495 1.02537 0.82535 0.87654 1.25327 0.96474 0.95394 1.00602 1.69619 1.40150 1.08258 1.35448 0.85758 0.77948 0.78516 0.81856 1.19166 1.20643 1.20637 1.67374 1.11613 1.26585 1.08475 1.22935 1.00644 0.86929 1.03437 0.87752 0.92232 0.92144 0.83696 0.83506 0.89868 0.89900 0.76947 0.75609 0.89964 0.89963 0.77000 0.91664 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.32 10.51 -19.46 -0.20 -2.52 16 3 C 0.08 0.67 6.71 -39.08 -0.26 0.41 16 4 C -0.11 -0.84 10.13 -39.13 -0.40 -1.23 16 5 C -0.11 -0.86 9.71 -39.46 -0.38 -1.24 16 6 C 0.07 0.71 6.15 -82.58 -0.51 0.20 16 7 C 0.20 2.20 5.98 -5.19 -0.03 2.17 16 8 N -0.74 -9.43 5.55 -66.41 -0.37 -9.80 16 9 C 0.71 11.72 8.57 -86.92 -0.74 10.98 16 10 O -0.60 -11.76 16.34 5.29 0.09 -11.67 16 11 N -0.72 -12.45 5.53 -66.41 -0.37 -12.82 16 12 C 0.13 2.43 6.15 -5.20 -0.03 2.40 16 13 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 14 O -0.60 -15.45 15.24 5.54 0.08 -15.37 16 15 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 16 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 17 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -24.02 13.05 55.50 0.72 -23.30 16 20 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 N -0.43 -4.65 10.27 -9.35 -0.10 -4.75 16 25 C 0.02 0.17 10.22 -17.37 -0.18 -0.01 16 26 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 28 H 0.06 0.20 7.69 -51.93 -0.40 -0.20 16 29 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.40 4.43 8.48 -40.82 -0.35 4.08 16 34 H 0.41 6.84 7.45 -40.82 -0.30 6.54 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.16 1.01 6.32 -52.49 -0.33 0.67 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -33.91 346.82 -6.43 -40.34 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -4.57 Total: 16.12 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -1.87 Total: 16.72 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.17 Total: -64.47 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.03 Total: -29.56 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.91 -6.43 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325034288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.154 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.34 seconds