Wall clock time and date at job start Tue Mar 31 2020 03:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48498 * 109.47124 * 270.00091 * 3 2 1 5 5 H 1.48499 * 109.46888 * 29.99534 * 3 2 1 6 6 H 1.48496 * 109.47533 * 149.99723 * 3 2 1 7 7 C 1.37884 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99586 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99943 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47062 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00192 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99981 * 0.02562 * 11 10 9 13 13 C 1.50695 * 119.99897 * 180.02562 * 11 10 9 14 14 O 1.45199 * 109.46949 * 180.02562 * 13 11 10 15 15 C 1.34236 * 117.00059 * 179.97438 * 14 13 11 16 16 O 1.20819 * 119.99992 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99813 * 180.02562 * 15 14 13 18 18 N 1.46502 * 109.46672 * 180.02562 * 17 15 14 19 19 C 1.35316 * 125.86606 * 125.32549 * 18 17 15 20 20 C 1.35351 * 106.17602 * 180.11468 * 19 18 17 21 21 C 1.50690 * 126.75202 * 179.85417 * 20 19 18 22 22 C 1.53000 * 117.50063 * 84.71586 * 21 20 19 23 23 C 1.53002 * 60.02940 * 252.49714 * 22 21 20 24 24 N 1.33773 * 106.49046 * 359.59343 * 20 19 18 25 25 N 1.28629 * 108.89215 * 0.26240 * 24 20 19 26 26 H 0.96993 * 120.00067 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47402 * 59.99916 * 9 7 2 28 28 H 1.09010 * 109.46906 * 299.99445 * 9 7 2 29 29 H 0.97006 * 119.99886 * 0.02562 * 10 9 7 30 30 H 1.08997 * 109.47361 * 60.00261 * 13 11 10 31 31 H 1.09000 * 109.47264 * 300.00134 * 13 11 10 32 32 H 1.09002 * 109.47137 * 60.00200 * 17 15 14 33 33 H 1.08997 * 109.47070 * 299.99770 * 17 15 14 34 34 H 1.08005 * 126.90881 * 359.97438 * 19 18 17 35 35 H 1.09008 * 115.56062 * 230.40216 * 21 20 19 36 36 H 1.09002 * 117.49833 * 359.97438 * 22 21 20 37 37 H 1.09002 * 117.49953 * 144.99860 * 22 21 20 38 38 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 39 39 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3251 -2.8215 0.0009 12 8 6.1132 -1.8996 0.0014 13 6 5.8273 -4.2423 0.0002 14 8 7.2793 -4.2423 0.0009 15 6 7.8888 -5.4383 0.0009 16 8 7.2308 -6.4516 0.0009 17 6 9.3938 -5.5171 0.0022 18 7 9.8091 -6.9220 0.0014 19 6 10.6427 -7.5017 -0.8931 20 6 10.7488 -8.7995 -0.5235 21 6 11.5641 -9.8675 -1.2057 22 6 13.0430 -9.9759 -0.8292 23 6 12.6410 -9.4121 -2.1936 24 7 9.9921 -8.9460 0.5698 25 7 9.4488 -7.8155 0.8549 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8911 28 1 3.8753 -0.6804 -0.8890 29 1 3.3696 -3.3125 0.0002 30 1 5.4641 -4.7556 -0.8900 31 1 5.4639 -4.7566 0.8899 32 1 9.7827 -5.0233 0.8928 33 1 9.7842 -5.0226 -0.8872 34 1 11.1245 -7.0253 -1.7341 35 1 11.0331 -10.7924 -1.4312 36 1 13.4265 -9.2743 -0.0883 37 1 13.4850 -10.9720 -0.8066 38 1 12.7599 -8.3400 -2.3501 39 1 12.8182 -10.0376 -3.0685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333030307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:36 Heat of formation + Delta-G solvation = 15.838199 kcal Electronic energy + Delta-G solvation = -23597.494706 eV Core-core repulsion = 19737.377095 eV Total energy + Delta-G solvation = -3860.117611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.68913 -40.89933 -39.03133 -37.76836 -36.79745 -34.93829 -34.47629 -32.50220 -31.11953 -30.32795 -29.03525 -27.11537 -24.52402 -23.50710 -22.74959 -22.12325 -21.38890 -20.69033 -20.24512 -18.45947 -18.22006 -17.42366 -17.21444 -16.79804 -16.32248 -16.00699 -15.62800 -15.24261 -15.13785 -14.97196 -14.80447 -14.15389 -13.92133 -13.29092 -13.10021 -12.73432 -12.71909 -12.44452 -12.18674 -12.04835 -11.92870 -11.56702 -11.32103 -11.14020 -11.07076 -11.03306 -10.83920 -10.71544 -10.39317 -10.05663 -9.60917 -9.47868 -9.40850 -8.87653 -8.36614 -6.28988 -4.32658 1.04355 1.53271 1.65776 2.13952 2.26791 2.89632 3.20800 3.27868 3.31226 3.34967 3.55902 3.76293 4.02907 4.25566 4.27241 4.33638 4.35589 4.40023 4.46846 4.76554 4.87111 4.89443 5.00120 5.06308 5.09345 5.15760 5.31954 5.36979 5.61920 5.67912 5.75253 5.92288 6.03279 6.64659 6.93361 6.98468 7.21520 7.25071 7.96115 8.17395 8.33495 8.58249 8.72079 9.29481 10.82726 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.050070 B = 0.001934 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.086824 B =14475.381841 C =14709.662714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.697 5.697 11 C 0.503 3.497 12 O -0.537 6.537 13 C 0.051 3.949 14 O -0.324 6.324 15 C 0.449 3.551 16 O -0.477 6.477 17 C 0.129 3.871 18 N -0.290 5.290 19 C -0.043 4.043 20 C 0.012 3.988 21 C -0.073 4.073 22 C -0.164 4.164 23 C -0.170 4.170 24 N -0.258 5.258 25 N -0.054 5.054 26 H 0.269 0.731 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.400 0.600 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.193 0.807 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.604 -15.834 -4.278 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.348 5.348 11 C 0.286 3.714 12 O -0.415 6.415 13 C -0.026 4.026 14 O -0.238 6.238 15 C 0.288 3.712 16 O -0.363 6.363 17 C 0.006 3.994 18 N -0.084 5.084 19 C -0.192 4.192 20 C -0.125 4.125 21 C -0.093 4.093 22 C -0.202 4.202 23 C -0.207 4.207 24 N -0.125 5.125 25 N -0.033 5.033 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.234 0.766 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.210 0.790 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 24.864 -15.562 -3.003 29.485 hybrid contribution 0.286 0.863 -1.001 1.352 sum 25.150 -14.699 -4.003 29.404 Atomic orbital electron populations 1.69872 1.06221 1.27568 1.48948 1.24792 0.94805 0.99190 0.93745 0.86813 0.80557 0.83202 0.79093 1.19785 1.20785 1.18491 1.21059 0.88291 0.95387 1.53883 0.90099 1.19574 0.95432 0.77788 0.97120 1.46080 1.04782 1.11685 1.72220 1.19851 0.83807 0.89213 0.78556 1.90706 1.55308 1.45591 1.49870 1.22921 0.76654 0.97726 1.05288 1.86489 1.22701 1.31206 1.83434 1.23133 0.91213 0.82437 0.74441 1.90817 1.66114 1.36096 1.43233 1.21322 0.90458 0.77805 1.09781 1.46789 1.31602 1.10053 1.20006 1.23288 1.01396 0.94836 0.99702 1.21018 1.02052 0.93067 0.96384 1.20021 0.89529 0.97513 1.02222 1.23011 0.95761 1.03071 0.98360 1.23044 1.01953 1.01912 0.93833 1.75101 1.09190 1.14871 1.13387 1.78493 1.18243 0.92527 1.14027 0.92128 0.95339 0.95826 0.76609 0.88016 0.87854 0.83553 0.83027 0.79016 0.85894 0.88637 0.88011 0.88536 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.96 55.43 0.77 -25.08 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.55 -14.57 9.83 -34.44 -0.34 -14.91 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.22 4.50 -5.19 -0.02 5.20 16 10 N -0.70 -13.22 5.55 -61.47 -0.34 -13.56 16 11 C 0.50 8.94 7.91 -10.99 -0.09 8.86 16 12 O -0.54 -11.59 16.50 -14.11 -0.23 -11.82 16 13 C 0.05 0.68 5.94 36.00 0.21 0.89 16 14 O -0.32 -4.13 9.75 -45.92 -0.45 -4.58 16 15 C 0.45 4.98 7.97 36.01 0.29 5.26 16 16 O -0.48 -6.94 15.43 -18.74 -0.29 -7.23 16 17 C 0.13 0.85 7.05 -5.19 -0.04 0.82 16 18 N -0.29 -2.79 3.20 -62.44 -0.20 -2.99 16 19 C -0.04 -0.33 10.89 -17.04 -0.19 -0.52 16 20 C 0.01 0.11 6.88 -82.78 -0.57 -0.46 16 21 C -0.07 -0.51 6.33 -91.74 -0.58 -1.09 16 22 C -0.16 -0.89 10.23 -26.73 -0.27 -1.16 16 23 C -0.17 -0.74 10.03 -26.69 -0.27 -1.00 16 24 N -0.26 -3.49 12.41 33.28 0.41 -3.07 16 25 N -0.05 -0.72 12.13 60.35 0.73 0.01 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 28 H 0.02 0.58 7.57 -51.92 -0.39 0.18 16 29 H 0.40 6.55 8.32 -40.82 -0.34 6.21 16 30 H 0.10 1.16 8.13 -51.93 -0.42 0.74 16 31 H 0.10 1.22 8.13 -51.93 -0.42 0.79 16 32 H 0.15 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.15 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.19 0.64 7.45 -52.48 -0.39 0.25 16 35 H 0.12 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.32 7.23 -51.93 -0.38 -0.06 16 39 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 349.15 15.07 5.26 5.26 Total: -1.00 -37.21 349.15 -5.79 -43.00 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -4.83 Total: -0.02 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.96 Total: 3.98 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 1.38 Total: -44.70 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.97 Total: -23.63 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.21 -5.79 -43.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333030307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.841 kcal (2) G-P(sol) polarization free energy of solvation -37.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds