Wall clock time and date at job start Tue Mar 31 2020 04:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.86723 * 2 1 4 4 N 1.30481 * 121.69956 * 179.70432 * 3 2 1 5 5 C 1.34163 * 121.31631 * 0.56746 * 4 3 2 6 6 N 1.38536 * 120.21135 * 179.74000 * 5 4 3 7 7 C 1.34776 * 120.00221 * 359.97438 * 6 5 4 8 8 O 1.21560 * 120.00250 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99583 * 180.02562 * 7 6 5 10 10 C 1.47418 * 125.65275 * 359.68540 * 9 7 6 11 11 C 1.55122 * 104.72493 * 155.82230 * 10 9 7 12 12 C 1.55154 * 101.48616 * 37.29804 * 11 10 9 13 13 O 1.42895 * 110.72424 * 82.69836 * 12 11 10 14 14 C 1.50705 * 110.87247 * 205.90005 * 12 11 10 15 15 H 1.08005 * 119.99891 * 355.06578 * 14 12 11 16 16 C 1.37882 * 119.99928 * 175.06098 * 14 12 11 17 17 N 1.31510 * 119.99802 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99731 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47532 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46912 * 119.99983 * 18 16 14 21 21 H 1.48492 * 109.47210 * 240.00013 * 18 16 14 22 22 C 1.47025 * 125.64509 * 180.02562 * 9 7 6 23 23 C 1.38319 * 119.56701 * 359.71814 * 5 4 3 24 24 C 1.34949 * 119.86481 * 180.26243 * 2 1 3 25 25 O 1.22054 * 120.64925 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47391 * 269.73224 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.73280 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.73407 * 1 2 3 29 29 H 1.07999 * 119.14957 * 359.97051 * 3 2 1 30 30 H 0.97000 * 119.99183 * 179.97438 * 6 5 4 31 31 H 1.09000 * 110.36781 * 274.75173 * 10 9 7 32 32 H 1.09003 * 110.36695 * 37.06938 * 10 9 7 33 33 H 1.09000 * 111.19343 * 279.19384 * 11 10 9 34 34 H 1.09004 * 110.90693 * 155.27672 * 11 10 9 35 35 H 0.96698 * 114.00296 * 185.02670 * 13 12 11 36 36 H 0.96997 * 119.99409 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.88090 * 300.43633 * 22 9 7 38 38 H 1.09003 * 109.88052 * 61.44545 * 22 9 7 39 39 H 1.08000 * 120.78393 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1362 1.1688 0.0000 4 7 3.4403 1.2105 0.0057 5 6 4.1740 0.0873 0.0005 6 7 5.5575 0.1583 0.0014 7 6 6.1707 1.3585 0.0069 8 8 5.5098 2.3787 0.0107 9 7 7.5167 1.4275 0.0072 10 6 8.4361 0.2751 0.0085 11 6 9.7520 0.8200 -0.6061 12 6 9.7986 2.2538 -0.0152 13 8 10.3440 2.2390 1.3055 14 6 10.5897 3.1765 -0.9063 15 1 11.0970 2.7842 -1.7754 16 6 10.6659 4.5214 -0.6120 17 7 10.0477 4.9990 0.4459 18 14 11.6471 5.6648 -1.7162 19 1 12.2419 4.8859 -2.8319 20 1 10.7494 6.7115 -2.2674 21 1 12.7295 6.3062 -0.9275 22 6 8.3113 2.6645 0.0134 23 6 3.5400 -1.1420 -0.0052 24 6 2.1370 -1.1703 -0.0054 25 8 1.5362 -2.2327 -0.0098 26 1 -0.3634 -0.0048 1.0276 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5097 29 1 1.5802 2.0947 -0.0005 30 1 6.0848 -0.6558 -0.0020 31 1 8.6063 -0.0733 1.0271 32 1 8.0355 -0.5305 -0.6069 33 1 9.6969 0.8476 -1.6944 34 1 10.6085 0.2328 -0.2747 35 1 10.3243 3.0981 1.7489 36 1 10.1017 5.9451 0.6530 37 1 8.0746 3.2614 -0.8673 38 1 8.0993 3.2366 0.9167 39 1 4.1112 -2.0585 -0.0090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425932987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:58 Heat of formation + Delta-G solvation = -41.947578 kcal Electronic energy + Delta-G solvation = -25369.392678 eV Core-core repulsion = 21506.769287 eV Total energy + Delta-G solvation = -3862.623391 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.85829 -40.06767 -38.06136 -37.24018 -35.85281 -34.42903 -33.60305 -32.27798 -30.76141 -30.02476 -28.05245 -27.55534 -25.29025 -24.83353 -23.47927 -22.41311 -20.36362 -19.71296 -18.56394 -17.89379 -17.32025 -17.18321 -16.90565 -16.51941 -15.68338 -15.43913 -15.07665 -14.66021 -14.40407 -14.28795 -13.86482 -13.59406 -13.42747 -13.08722 -12.96602 -12.93776 -12.86860 -12.33256 -11.77519 -11.61118 -11.21185 -11.10726 -10.91164 -10.76139 -10.51611 -10.44533 -10.23574 -10.21825 -9.41817 -9.40924 -9.36502 -8.73356 -8.38890 -8.33495 -7.94322 -6.33158 -4.41759 0.55105 1.86726 2.30226 2.59554 3.17954 3.27047 3.30153 3.32270 3.76849 3.80805 4.18627 4.25219 4.44975 4.59283 4.91112 4.94523 4.95713 5.20571 5.23335 5.37775 5.44744 5.55752 5.66842 5.85478 5.91011 5.99586 6.37040 6.41262 6.55534 6.61590 6.77602 6.80350 6.98908 7.20794 7.34882 7.68467 7.74798 7.81985 7.97111 8.22364 8.61889 8.83893 9.23724 9.32998 10.74726 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.003071 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.125113 B = 9114.422223 C = 9687.761756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.537 5.537 3 C 0.393 3.607 4 N -0.510 5.510 5 C 0.449 3.551 6 N -0.659 5.659 7 C 0.701 3.299 8 O -0.528 6.528 9 N -0.623 5.623 10 C 0.096 3.904 11 C -0.115 4.115 12 C 0.248 3.752 13 O -0.585 6.585 14 C -0.537 4.537 15 H 0.068 0.932 16 C 0.071 3.929 17 N -0.893 5.893 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.122 3.878 23 C -0.371 4.371 24 C 0.535 3.465 25 O -0.555 6.555 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.209 0.791 30 H 0.416 0.584 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.383 0.617 36 H 0.270 0.730 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -7.795 -0.561 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.257 5.257 3 C 0.107 3.893 4 N -0.234 5.234 5 C 0.228 3.772 6 N -0.304 5.304 7 C 0.402 3.598 8 O -0.400 6.400 9 N -0.361 5.361 10 C -0.027 4.027 11 C -0.153 4.153 12 C 0.207 3.793 13 O -0.393 6.393 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.133 4.133 17 N -0.531 5.531 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.001 3.999 23 C -0.401 4.401 24 C 0.337 3.663 25 O -0.436 6.436 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.225 0.775 30 H 0.254 0.746 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.954 -7.459 -0.592 15.834 hybrid contribution 0.357 0.197 -0.379 0.557 sum -13.598 -7.262 -0.971 15.446 Atomic orbital electron populations 1.22148 0.76965 1.05139 1.04085 1.46816 1.10491 1.08428 1.59948 1.25074 0.88596 0.89925 0.85711 1.68564 1.03338 1.27955 1.23578 1.18397 0.84022 0.89132 0.85618 1.42920 1.03593 1.10214 1.73711 1.15638 0.81593 0.83081 0.79484 1.91021 1.62773 1.32076 1.54093 1.48124 1.02195 1.10762 1.75014 1.22411 0.91425 0.88426 1.00452 1.22761 0.94869 0.97740 0.99913 1.19518 0.87300 0.90465 0.81969 1.86108 1.85029 1.37934 1.30272 1.21512 1.32363 0.92504 1.11189 0.91431 1.25078 0.94663 0.98298 0.95250 1.69697 1.42263 1.15064 1.26121 0.86339 0.79697 0.80378 0.80446 1.19597 1.20745 1.20734 1.22991 0.91741 0.82982 1.02228 1.22141 0.93371 0.97738 1.26860 1.16576 0.88192 0.82879 0.78635 1.90933 1.70336 1.28311 1.54055 0.90404 0.88816 0.89295 0.77466 0.74623 0.91487 0.92448 0.90303 0.90377 0.76672 0.91987 0.91382 0.91515 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.39 59.85 0.62 0.97 16 2 N -0.54 -5.38 2.97 -128.81 -0.38 -5.76 16 3 C 0.39 3.89 11.46 -90.63 -1.04 2.85 16 4 N -0.51 -7.55 7.94 -13.47 -0.11 -7.66 16 5 C 0.45 6.59 7.43 -154.25 -1.15 5.44 16 6 N -0.66 -9.82 5.32 -15.81 -0.08 -9.91 16 7 C 0.70 13.49 8.45 -86.92 -0.73 12.75 16 8 O -0.53 -11.96 14.91 5.31 0.08 -11.88 16 9 N -0.62 -12.12 3.32 -176.11 -0.59 -12.71 16 10 C 0.10 1.54 6.58 -2.42 -0.02 1.53 16 11 C -0.11 -2.14 6.24 -24.47 -0.15 -2.29 16 12 C 0.25 5.72 0.85 -89.94 -0.08 5.64 16 13 O -0.58 -14.06 13.07 -35.23 -0.46 -14.52 16 14 C -0.54 -13.56 8.13 -34.44 -0.28 -13.84 16 15 H 0.07 1.69 7.78 -52.48 -0.41 1.28 16 16 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 17 N -0.89 -23.12 10.96 55.43 0.61 -22.51 16 18 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.12 2.83 5.23 -3.06 -0.02 2.81 16 23 C -0.37 -4.96 9.94 -38.77 -0.39 -5.35 16 24 C 0.53 7.35 7.42 -15.40 -0.11 7.24 16 25 O -0.56 -9.18 16.76 4.87 0.08 -9.10 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.67 7.44 -51.93 -0.39 0.28 16 28 H 0.09 0.22 8.00 -51.93 -0.42 -0.20 16 29 H 0.21 1.04 8.01 -52.49 -0.42 0.62 16 30 H 0.42 4.84 7.17 -40.82 -0.29 4.55 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 33 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.38 9.48 7.45 45.56 0.34 9.82 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.07 1.73 7.81 -51.93 -0.41 1.33 16 38 H 0.07 1.70 7.92 -51.93 -0.41 1.29 16 39 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -33.94 331.23 -8.33 -42.27 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.02 Total: 12.37 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: -3.43 Total: 19.45 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.55 Total: -58.54 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.30 Total: -35.51 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.94 -8.33 -42.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425932987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.325 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds