Wall clock time and date at job start Tue Mar 31 2020 04:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.86723 * 2 1 4 4 N 1.30481 * 121.69956 * 179.70432 * 3 2 1 5 5 C 1.34163 * 121.31631 * 0.56746 * 4 3 2 6 6 N 1.38536 * 120.21135 * 179.74000 * 5 4 3 7 7 C 1.34776 * 120.00221 * 359.97438 * 6 5 4 8 8 O 1.21560 * 120.00250 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99583 * 180.02562 * 7 6 5 10 10 C 1.47418 * 125.65275 * 359.68540 * 9 7 6 11 11 C 1.55122 * 104.72493 * 155.82230 * 10 9 7 12 12 C 1.55154 * 101.48616 * 37.29804 * 11 10 9 13 13 O 1.42895 * 110.72424 * 82.69836 * 12 11 10 14 14 C 1.50705 * 110.87247 * 205.90005 * 12 11 10 15 15 H 1.08005 * 119.99891 * 355.06578 * 14 12 11 16 16 C 1.37882 * 119.99928 * 175.06098 * 14 12 11 17 17 N 1.31510 * 119.99802 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 119.99731 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47532 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46912 * 119.99983 * 18 16 14 21 21 H 1.48492 * 109.47210 * 240.00013 * 18 16 14 22 22 C 1.47025 * 125.64509 * 180.02562 * 9 7 6 23 23 C 1.38319 * 119.56701 * 359.71814 * 5 4 3 24 24 C 1.34949 * 119.86481 * 180.26243 * 2 1 3 25 25 O 1.22054 * 120.64925 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47391 * 269.73224 * 1 2 3 27 27 H 1.09001 * 109.46813 * 149.73280 * 1 2 3 28 28 H 1.09004 * 109.47041 * 29.73407 * 1 2 3 29 29 H 1.07999 * 119.14957 * 359.97051 * 3 2 1 30 30 H 0.97000 * 119.99183 * 179.97438 * 6 5 4 31 31 H 1.09000 * 110.36781 * 274.75173 * 10 9 7 32 32 H 1.09003 * 110.36695 * 37.06938 * 10 9 7 33 33 H 1.09000 * 111.19343 * 279.19384 * 11 10 9 34 34 H 1.09004 * 110.90693 * 155.27672 * 11 10 9 35 35 H 0.96698 * 114.00296 * 185.02670 * 13 12 11 36 36 H 0.96997 * 119.99409 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.88090 * 300.43633 * 22 9 7 38 38 H 1.09003 * 109.88052 * 61.44545 * 22 9 7 39 39 H 1.08000 * 120.78393 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1362 1.1688 0.0000 4 7 3.4403 1.2105 0.0057 5 6 4.1740 0.0873 0.0005 6 7 5.5575 0.1583 0.0014 7 6 6.1707 1.3585 0.0069 8 8 5.5098 2.3787 0.0107 9 7 7.5167 1.4275 0.0072 10 6 8.4361 0.2751 0.0085 11 6 9.7520 0.8200 -0.6061 12 6 9.7986 2.2538 -0.0152 13 8 10.3440 2.2390 1.3055 14 6 10.5897 3.1765 -0.9063 15 1 11.0970 2.7842 -1.7754 16 6 10.6659 4.5214 -0.6120 17 7 10.0477 4.9990 0.4459 18 14 11.6471 5.6648 -1.7162 19 1 12.2419 4.8859 -2.8319 20 1 10.7494 6.7115 -2.2674 21 1 12.7295 6.3062 -0.9275 22 6 8.3113 2.6645 0.0134 23 6 3.5400 -1.1420 -0.0052 24 6 2.1370 -1.1703 -0.0054 25 8 1.5362 -2.2327 -0.0098 26 1 -0.3634 -0.0048 1.0276 27 1 -0.3633 -0.8876 -0.5180 28 1 -0.3633 0.8924 -0.5097 29 1 1.5802 2.0947 -0.0005 30 1 6.0848 -0.6558 -0.0020 31 1 8.6063 -0.0733 1.0271 32 1 8.0355 -0.5305 -0.6069 33 1 9.6969 0.8476 -1.6944 34 1 10.6085 0.2328 -0.2747 35 1 10.3243 3.0981 1.7489 36 1 10.1017 5.9451 0.6530 37 1 8.0746 3.2614 -0.8673 38 1 8.0993 3.2366 0.9167 39 1 4.1112 -2.0585 -0.0090 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425932987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:58 Heat of formation + Delta-G solvation = -66.754853 kcal Electronic energy + Delta-G solvation = -25370.468402 eV Core-core repulsion = 21506.769287 eV Total energy + Delta-G solvation = -3863.699115 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.84261 -41.47052 -39.51446 -38.49553 -37.01480 -36.11752 -34.72639 -34.21793 -31.98874 -31.42872 -29.61452 -28.46970 -26.99684 -25.74069 -24.83313 -23.67589 -21.65075 -21.43105 -19.85099 -19.07462 -19.02532 -18.25106 -18.02128 -17.49370 -17.22846 -16.81147 -16.54195 -16.20804 -15.92955 -15.33024 -15.22742 -14.77558 -14.70769 -14.54401 -14.25374 -14.22730 -13.79929 -13.50143 -13.41636 -13.30855 -12.86275 -12.54977 -12.37531 -12.25738 -12.24269 -12.07865 -11.72480 -11.32101 -11.17219 -10.67929 -10.62404 -10.45061 -10.27776 -9.62656 -9.32952 -8.25411 -6.40632 -0.39504 0.83566 1.20696 1.41877 1.45483 1.55369 1.60244 1.98623 2.38595 2.62309 2.70298 3.01661 3.19969 3.68360 3.78017 3.83959 4.04338 4.11213 4.16719 4.33810 4.42301 4.50632 4.56151 4.57655 4.71444 4.85670 5.04115 5.05148 5.12497 5.16506 5.33562 5.40035 5.51233 5.55417 5.75545 5.81538 6.08254 6.61072 6.67749 6.80787 6.95356 7.28822 7.36416 7.39381 8.80813 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.029065 B = 0.003071 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.125113 B = 9114.422223 C = 9687.761756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.530 5.530 3 C 0.412 3.588 4 N -0.562 5.562 5 C 0.439 3.561 6 N -0.645 5.645 7 C 0.703 3.297 8 O -0.569 6.569 9 N -0.628 5.628 10 C 0.099 3.901 11 C -0.110 4.110 12 C 0.232 3.768 13 O -0.587 6.587 14 C -0.555 4.555 15 H 0.067 0.933 16 C 0.027 3.973 17 N -0.914 5.914 18 Si 0.961 3.039 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.279 1.279 22 C 0.143 3.857 23 C -0.369 4.369 24 C 0.525 3.475 25 O -0.590 6.590 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.259 0.741 30 H 0.431 0.569 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.375 0.625 36 H 0.270 0.730 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.827 -8.640 -1.196 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.247 5.247 3 C 0.128 3.872 4 N -0.287 5.287 5 C 0.218 3.782 6 N -0.293 5.293 7 C 0.404 3.596 8 O -0.443 6.443 9 N -0.365 5.365 10 C -0.022 4.022 11 C -0.148 4.148 12 C 0.192 3.808 13 O -0.395 6.395 14 C -0.594 4.594 15 H 0.085 0.915 16 C -0.175 4.175 17 N -0.553 5.553 18 Si 0.787 3.213 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.205 1.205 22 C 0.019 3.981 23 C -0.399 4.399 24 C 0.328 3.672 25 O -0.474 6.474 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.275 0.725 30 H 0.272 0.728 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.225 0.775 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.037 -8.361 -1.231 17.249 hybrid contribution 0.551 0.467 -0.170 0.742 sum -14.486 -7.894 -1.401 16.557 Atomic orbital electron populations 1.22501 0.74121 1.06660 1.05518 1.46876 1.12261 1.07460 1.58064 1.25952 0.87529 0.91099 0.82629 1.68520 1.05618 1.28622 1.25934 1.18513 0.83736 0.89643 0.86273 1.42551 1.04035 1.09228 1.73466 1.15725 0.81228 0.83777 0.78851 1.90981 1.63652 1.33961 1.55717 1.48013 1.02717 1.10497 1.75288 1.22584 0.89627 0.88136 1.01861 1.22756 0.96871 0.94959 1.00207 1.19730 0.86549 0.93169 0.81345 1.86099 1.85191 1.37359 1.30811 1.21843 1.32645 0.93288 1.11579 0.91499 1.25788 0.95558 0.99711 0.96401 1.69800 1.43099 1.15164 1.27230 0.85448 0.78338 0.78499 0.78995 1.18977 1.20984 1.20460 1.22424 0.92736 0.84018 0.98878 1.22221 0.93616 0.97716 1.26355 1.16703 0.88461 0.83470 0.78535 1.90915 1.70981 1.29728 1.55766 0.88983 0.90182 0.84963 0.72534 0.72798 0.90521 0.87763 0.89669 0.89034 0.77540 0.92093 0.94688 0.94891 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.39 127.77 1.33 1.79 16 2 N -0.53 -9.33 2.97 -679.42 -2.02 -11.35 16 3 C 0.41 7.06 11.46 180.35 2.07 9.12 16 4 N -0.56 -15.90 7.94 -196.54 -1.56 -17.46 16 5 C 0.44 12.38 7.43 132.49 0.98 13.36 16 6 N -0.65 -18.42 5.32 -322.21 -1.72 -20.14 16 7 C 0.70 26.87 8.45 179.06 1.51 28.38 16 8 O -0.57 -26.17 14.91 -3.91 -0.06 -26.23 16 9 N -0.63 -24.22 3.32 -829.37 -2.76 -26.97 16 10 C 0.10 2.98 6.58 86.93 0.57 3.55 16 11 C -0.11 -3.92 6.24 32.06 0.20 -3.72 16 12 C 0.23 10.79 0.85 -10.35 -0.01 10.78 16 13 O -0.59 -28.56 13.07 -148.98 -1.95 -30.51 16 14 C -0.56 -28.28 8.13 25.60 0.21 -28.07 16 15 H 0.07 3.33 7.78 -2.91 -0.02 3.31 16 16 C 0.03 1.36 5.28 84.66 0.45 1.81 16 17 N -0.91 -48.63 10.96 21.45 0.24 -48.39 16 18 Si 0.96 41.29 29.54 68.60 2.03 43.31 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 C 0.14 6.82 5.23 86.73 0.45 7.27 16 23 C -0.37 -9.42 9.94 22.80 0.23 -9.19 16 24 C 0.53 13.77 7.42 84.72 0.63 14.40 16 25 O -0.59 -19.10 16.76 -5.49 -0.09 -19.19 16 26 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.99 7.44 -2.39 -0.02 0.98 16 28 H 0.13 0.03 8.00 -2.38 -0.02 0.01 16 29 H 0.26 1.47 8.01 -2.91 -0.02 1.45 16 30 H 0.43 9.07 7.17 -92.71 -0.66 8.41 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.10 2.17 7.29 -2.39 -0.02 2.16 16 33 H 0.08 2.91 8.04 -2.39 -0.02 2.89 16 34 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.38 19.20 7.45 -74.06 -0.55 18.65 16 36 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.03 1.86 7.81 -2.39 -0.02 1.84 16 38 H 0.03 1.76 7.92 -2.39 -0.02 1.74 16 39 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -77.23 331.23 0.63 -76.60 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.10 Total: 30.84 kcal Atomic # 6 Polarization: 40.87 SS G_CDS: 8.62 Total: 49.48 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -7.81 Total: -124.31 kcal Atomic # 8 Polarization: -73.83 SS G_CDS: -2.10 Total: -75.92 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -77.23 0.63 -76.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425932987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.850 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds