Wall clock time and date at job start Tue Mar 31 2020 03:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47018 * 240.00135 * 3 2 1 5 5 H 1.48498 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47042 * 120.00423 * 3 2 1 7 7 C 1.38951 * 119.99341 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99375 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00144 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00357 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99989 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.47958 * 110.99782 * 170.00350 * 13 12 10 15 15 C 1.53940 * 86.17708 * 222.41171 * 14 13 12 16 16 C 1.52999 * 113.73209 * 138.07899 * 15 14 13 17 17 N 1.46497 * 109.47229 * 175.00035 * 16 15 14 18 18 C 1.34772 * 120.00259 * 179.97438 * 17 16 15 19 19 O 1.21617 * 120.00249 * 0.02562 * 18 17 16 20 20 C 1.47425 * 120.00233 * 179.97438 * 18 17 16 21 21 C 1.36093 * 126.44979 * 180.02562 * 20 18 17 22 22 O 1.34255 * 106.94938 * 180.28199 * 21 20 18 23 23 C 1.34053 * 108.22560 * 359.61124 * 22 21 20 24 24 N 1.29934 * 109.24249 * 0.39976 * 23 22 21 25 25 C 1.47950 * 111.00594 * 70.63982 * 13 12 10 26 26 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 27 27 H 0.97010 * 119.99750 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.46611 * 59.99877 * 12 10 9 29 29 H 1.08997 * 109.46927 * 300.00058 * 12 10 9 30 30 H 1.09004 * 113.75997 * 108.09660 * 14 13 12 31 31 H 1.08997 * 113.75981 * 336.72478 * 14 13 12 32 32 H 1.09000 * 113.73503 * 269.25344 * 15 14 13 33 33 H 1.08996 * 109.47568 * 55.00049 * 16 15 14 34 34 H 1.08998 * 109.47034 * 294.99900 * 16 15 14 35 35 H 0.97004 * 120.00039 * 359.97438 * 17 16 15 36 36 H 1.08002 * 126.52257 * 0.02562 * 21 20 18 37 37 H 1.08002 * 125.38193 * 180.15394 * 23 22 21 38 38 H 1.08997 * 113.75849 * 23.25940 * 25 13 12 39 39 H 1.09006 * 113.75826 * 251.90381 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0004 14 6 1.5083 -7.2665 0.2389 15 6 2.6843 -7.6051 1.1728 16 6 2.2594 -8.2833 2.4768 17 7 3.4507 -8.6699 3.2368 18 6 3.3193 -9.2871 4.4277 19 8 2.2119 -9.5235 4.8713 20 6 4.5181 -9.6767 5.1922 21 6 4.5385 -10.3027 6.4005 22 8 5.8283 -10.4628 6.7367 23 6 6.5842 -9.9544 5.7532 24 7 5.8125 -9.4773 4.8231 25 6 2.8896 -6.0851 1.3032 26 1 -0.4850 0.8401 0.0004 27 1 0.3532 -2.3906 -0.0005 28 1 0.6172 -4.9204 -0.8914 29 1 0.6165 -4.9209 0.8886 30 1 1.4503 -7.9043 -0.6432 31 1 0.5535 -7.1639 0.7545 32 1 3.5061 -8.1194 0.6747 33 1 1.6696 -9.1712 2.2493 34 1 1.6602 -7.5908 3.0680 35 1 4.3340 -8.4817 2.8829 36 1 3.6803 -10.6084 6.9805 37 1 7.6640 -9.9399 5.7382 38 1 2.3389 -5.6369 2.1301 39 1 3.9353 -5.7789 1.2716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494534656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:44 Heat of formation + Delta-G solvation = -7.156193 kcal Electronic energy + Delta-G solvation = -23998.833225 eV Core-core repulsion = 20137.718502 eV Total energy + Delta-G solvation = -3861.114723 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.83045 -40.29292 -39.40536 -37.70364 -35.30124 -34.89941 -33.87844 -31.38961 -31.02795 -30.53526 -27.59428 -25.95757 -25.14170 -24.08993 -23.15126 -22.33091 -20.95263 -19.77930 -19.21121 -18.62320 -17.84817 -17.15178 -16.85156 -16.48931 -16.18031 -15.59980 -15.43431 -15.19854 -14.92875 -14.59283 -14.29733 -14.13723 -13.80549 -13.60694 -13.31628 -12.93528 -12.48261 -12.11876 -11.78172 -11.71294 -11.48088 -11.34803 -11.25792 -11.04572 -10.69615 -10.60126 -10.44206 -10.36477 -10.19551 -9.64400 -9.48521 -9.25343 -8.64057 -8.21523 -7.95381 -6.40714 -3.81544 0.72358 1.64765 2.25696 2.84541 3.01609 3.20667 3.26198 3.30659 3.62695 3.90296 4.00442 4.21676 4.36472 4.42335 4.53056 4.65727 4.95264 5.08233 5.13273 5.18671 5.24078 5.35824 5.41731 5.53588 5.59909 5.65492 5.74689 5.77081 5.85307 6.04934 6.15969 6.27649 6.33740 6.64152 6.94332 7.21793 7.30903 7.55773 7.89173 8.06446 8.62461 9.18789 9.55170 10.07025 10.77050 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.002348 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.687151 B =11922.050241 C =12675.685279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.010 3.990 13 N -0.453 5.453 14 C 0.009 3.991 15 C -0.134 4.134 16 C 0.128 3.872 17 N -0.707 5.707 18 C 0.600 3.400 19 O -0.539 6.539 20 C -0.074 4.074 21 C 0.016 3.984 22 O -0.200 6.200 23 C 0.180 3.820 24 N -0.466 5.466 25 C 0.026 3.974 26 H 0.272 0.728 27 H 0.392 0.608 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.231 0.769 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -21.754 10.340 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.122 4.122 13 N -0.175 5.175 14 C -0.121 4.121 15 C -0.154 4.154 16 C 0.004 3.996 17 N -0.357 5.357 18 C 0.385 3.615 19 O -0.417 6.417 20 C -0.194 4.194 21 C -0.058 4.058 22 O -0.085 6.085 23 C -0.048 4.048 24 N -0.195 5.195 25 C -0.103 4.103 26 H 0.082 0.918 27 H 0.225 0.775 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.248 0.752 36 H 0.247 0.753 37 H 0.272 0.728 38 H 0.085 0.915 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.045 -21.315 9.470 24.365 hybrid contribution -0.542 0.760 1.067 1.418 sum 6.503 -20.555 10.536 23.996 Atomic orbital electron populations 1.69609 1.05930 1.28247 1.50594 1.25263 0.95642 0.99714 0.97346 0.85915 0.78759 0.80463 0.79068 1.19879 1.20971 1.19928 1.19645 0.93315 0.82241 1.47667 0.88011 1.41868 1.09180 1.04600 1.64499 1.19692 0.88376 0.84520 0.84525 1.90516 1.13643 1.87021 1.55151 1.22467 0.95184 0.92647 1.01920 1.68399 1.18416 0.99937 1.30795 1.23969 0.95769 0.93593 0.98733 1.23351 1.00108 0.97076 0.94831 1.21526 0.87025 0.99719 0.91332 1.45797 1.11108 1.59051 1.19780 1.16745 0.86144 0.77741 0.80833 1.90839 1.25344 1.55973 1.69544 1.21822 0.92318 1.08094 0.97180 1.25336 0.84785 0.99029 0.96643 1.84458 1.17025 1.62554 1.44470 1.28177 0.99616 0.95163 0.81887 1.70778 1.00543 1.19705 1.28465 1.23873 1.02401 0.92493 0.91494 0.91828 0.77490 0.89114 0.92793 0.89054 0.91073 0.87582 0.90826 0.90910 0.75222 0.75300 0.72836 0.91454 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C 0.44 10.65 7.59 -10.98 -0.08 10.57 16 11 O -0.58 -15.88 15.13 5.55 0.08 -15.79 16 12 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 13 N -0.45 -7.49 5.95 -239.76 -1.43 -8.92 16 14 C 0.01 0.11 7.54 -2.77 -0.02 0.09 16 15 C -0.13 -1.50 3.94 -89.69 -0.35 -1.86 16 16 C 0.13 1.36 5.53 -4.04 -0.02 1.34 16 17 N -0.71 -7.67 5.55 -61.39 -0.34 -8.01 16 18 C 0.60 7.25 7.81 -12.52 -0.10 7.15 16 19 O -0.54 -7.84 16.89 5.26 0.09 -7.76 16 20 C -0.07 -0.76 6.99 -83.02 -0.58 -1.34 16 21 C 0.02 0.12 11.95 29.96 0.36 0.48 16 22 O -0.20 -1.34 10.73 6.51 0.07 -1.27 16 23 C 0.18 1.07 13.19 51.96 0.69 1.75 16 24 N -0.47 -4.33 11.06 -11.48 -0.13 -4.46 16 25 C 0.03 0.40 6.31 -2.78 -0.02 0.38 16 26 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 32 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.85 7.84 -51.93 -0.41 0.45 16 35 H 0.41 4.11 8.20 -40.82 -0.33 3.78 16 36 H 0.23 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.26 0.22 8.06 -52.49 -0.42 -0.21 16 38 H 0.07 1.06 7.53 -51.93 -0.39 0.66 16 39 H 0.09 1.61 8.09 -51.93 -0.42 1.19 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -35.67 345.00 -5.93 -41.60 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.72 Total: 11.22 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -0.40 Total: 10.63 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -1.23 Total: -60.07 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: 0.24 Total: -24.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.67 -5.93 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494534656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.444 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds