Wall clock time and date at job start Tue Mar 31 2020 03:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47018 * 240.00135 * 3 2 1 5 5 H 1.48498 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47042 * 120.00423 * 3 2 1 7 7 C 1.38951 * 119.99341 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99375 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00489 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00144 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00357 * 0.02562 * 10 9 7 12 12 C 1.50710 * 119.99989 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46965 * 180.02562 * 12 10 9 14 14 C 1.47958 * 110.99782 * 170.00350 * 13 12 10 15 15 C 1.53940 * 86.17708 * 222.41171 * 14 13 12 16 16 C 1.52999 * 113.73209 * 138.07899 * 15 14 13 17 17 N 1.46497 * 109.47229 * 175.00035 * 16 15 14 18 18 C 1.34772 * 120.00259 * 179.97438 * 17 16 15 19 19 O 1.21617 * 120.00249 * 0.02562 * 18 17 16 20 20 C 1.47425 * 120.00233 * 179.97438 * 18 17 16 21 21 C 1.36093 * 126.44979 * 180.02562 * 20 18 17 22 22 O 1.34255 * 106.94938 * 180.28199 * 21 20 18 23 23 C 1.34053 * 108.22560 * 359.61124 * 22 21 20 24 24 N 1.29934 * 109.24249 * 0.39976 * 23 22 21 25 25 C 1.47950 * 111.00594 * 70.63982 * 13 12 10 26 26 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 27 27 H 0.97010 * 119.99750 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.46611 * 59.99877 * 12 10 9 29 29 H 1.08997 * 109.46927 * 300.00058 * 12 10 9 30 30 H 1.09004 * 113.75997 * 108.09660 * 14 13 12 31 31 H 1.08997 * 113.75981 * 336.72478 * 14 13 12 32 32 H 1.09000 * 113.73503 * 269.25344 * 15 14 13 33 33 H 1.08996 * 109.47568 * 55.00049 * 16 15 14 34 34 H 1.08998 * 109.47034 * 294.99900 * 16 15 14 35 35 H 0.97004 * 120.00039 * 359.97438 * 17 16 15 36 36 H 1.08002 * 126.52257 * 0.02562 * 21 20 18 37 37 H 1.08002 * 125.38193 * 180.15394 * 23 22 21 38 38 H 1.08997 * 113.75849 * 23.25940 * 25 13 12 39 39 H 1.09006 * 113.75826 * 251.90381 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2100 -3.5580 -0.0001 12 6 1.2434 -4.8630 -0.0011 13 7 2.1980 -5.9796 -0.0004 14 6 1.5083 -7.2665 0.2389 15 6 2.6843 -7.6051 1.1728 16 6 2.2594 -8.2833 2.4768 17 7 3.4507 -8.6699 3.2368 18 6 3.3193 -9.2871 4.4277 19 8 2.2119 -9.5235 4.8713 20 6 4.5181 -9.6767 5.1922 21 6 4.5385 -10.3027 6.4005 22 8 5.8283 -10.4628 6.7367 23 6 6.5842 -9.9544 5.7532 24 7 5.8125 -9.4773 4.8231 25 6 2.8896 -6.0851 1.3032 26 1 -0.4850 0.8401 0.0004 27 1 0.3532 -2.3906 -0.0005 28 1 0.6172 -4.9204 -0.8914 29 1 0.6165 -4.9209 0.8886 30 1 1.4503 -7.9043 -0.6432 31 1 0.5535 -7.1639 0.7545 32 1 3.5061 -8.1194 0.6747 33 1 1.6696 -9.1712 2.2493 34 1 1.6602 -7.5908 3.0680 35 1 4.3340 -8.4817 2.8829 36 1 3.6803 -10.6084 6.9805 37 1 7.6640 -9.9399 5.7382 38 1 2.3389 -5.6369 2.1301 39 1 3.9353 -5.7789 1.2716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494534656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:40 Heat of formation + Delta-G solvation = -40.014465 kcal Electronic energy + Delta-G solvation = -24000.258067 eV Core-core repulsion = 20137.718502 eV Total energy + Delta-G solvation = -3862.539564 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.38647 -41.44541 -40.46337 -39.49507 -36.11599 -35.92949 -35.67033 -33.33693 -32.20148 -31.34554 -28.83481 -27.07935 -26.82643 -25.13772 -23.81383 -23.36168 -21.77541 -21.02990 -20.72096 -19.91852 -19.37877 -17.87246 -17.72213 -17.55065 -17.43203 -16.68519 -16.60666 -16.42432 -16.23006 -15.85609 -15.65406 -15.42171 -14.99635 -14.80518 -14.43439 -14.28660 -13.72655 -13.54546 -13.45245 -13.08673 -12.86270 -12.46220 -12.43317 -12.35326 -12.14145 -11.90362 -11.82033 -11.68491 -11.50557 -11.33297 -10.35887 -10.34548 -10.05654 -10.03664 -9.68696 -8.48317 -5.97341 0.09467 1.05818 1.38152 1.39798 1.51045 1.72588 2.03096 2.08723 2.21420 2.27546 2.81546 3.08330 3.18155 3.27264 3.44927 3.66022 3.80599 3.89119 4.17578 4.18055 4.29903 4.38862 4.49287 4.51639 4.54081 4.60453 4.64729 4.68542 4.83500 4.88542 5.16616 5.17829 5.34478 5.37988 5.42486 5.89067 6.07148 6.25737 6.57308 6.58252 7.02178 7.10573 7.53756 8.09588 8.68979 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.002348 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.687151 B =11922.050241 C =12675.685279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.619 6.619 12 C 0.022 3.978 13 N -0.482 5.482 14 C 0.018 3.982 15 C -0.107 4.107 16 C 0.133 3.867 17 N -0.704 5.704 18 C 0.597 3.403 19 O -0.572 6.572 20 C -0.109 4.109 21 C 0.030 3.970 22 O -0.198 6.198 23 C 0.199 3.801 24 N -0.501 5.501 25 C 0.018 3.982 26 H 0.278 0.722 27 H 0.396 0.604 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.415 0.585 36 H 0.251 0.749 37 H 0.301 0.699 38 H 0.059 0.941 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 -22.890 10.789 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.505 6.505 12 C -0.110 4.110 13 N -0.204 5.204 14 C -0.111 4.111 15 C -0.126 4.126 16 C 0.010 3.990 17 N -0.354 5.354 18 C 0.384 3.616 19 O -0.452 6.452 20 C -0.227 4.227 21 C -0.045 4.045 22 O -0.083 6.083 23 C -0.030 4.030 24 N -0.230 5.230 25 C -0.111 4.111 26 H 0.087 0.913 27 H 0.230 0.770 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.252 0.748 36 H 0.267 0.733 37 H 0.316 0.684 38 H 0.077 0.923 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.192 -22.462 9.898 25.579 hybrid contribution -0.512 1.057 0.952 1.512 sum 6.680 -21.405 10.850 24.910 Atomic orbital electron populations 1.69671 1.06830 1.29392 1.50251 1.26058 0.96578 1.02442 0.96244 0.84986 0.77779 0.76601 0.78962 1.19680 1.19358 1.19702 1.19615 0.92649 0.84048 1.50089 0.90429 1.41952 1.09308 1.04748 1.65212 1.20783 0.88299 0.85996 0.82265 1.90484 1.15723 1.87926 1.56340 1.22367 0.94965 0.89826 1.03793 1.68395 1.19351 1.01157 1.31533 1.24089 0.96252 0.90932 0.99809 1.23141 1.00299 0.94109 0.95051 1.21450 0.86995 0.99850 0.90718 1.45804 1.11330 1.58631 1.19665 1.17039 0.86468 0.77233 0.80909 1.90806 1.26627 1.57480 1.70311 1.21708 0.92231 1.10407 0.98353 1.25726 0.85673 0.97325 0.95766 1.84502 1.16699 1.62485 1.44619 1.29208 1.00922 0.92506 0.80367 1.70739 1.00516 1.21583 1.30161 1.23826 1.00629 0.95689 0.90961 0.91255 0.77019 0.87174 0.90657 0.86925 0.89330 0.86469 0.89552 0.91966 0.74802 0.73286 0.68434 0.92299 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.40 13.05 21.66 0.28 -50.11 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 10 C 0.44 21.50 7.59 87.66 0.67 22.16 16 11 O -0.62 -35.08 15.13 -3.06 -0.05 -35.12 16 12 C 0.02 0.78 5.31 85.56 0.45 1.23 16 13 N -0.48 -15.48 5.95 -912.47 -5.43 -20.91 16 14 C 0.02 0.38 7.54 86.41 0.65 1.03 16 15 C -0.11 -2.25 3.94 -10.15 -0.04 -2.29 16 16 C 0.13 2.71 5.53 86.38 0.48 3.19 16 17 N -0.70 -15.09 5.55 -466.38 -2.59 -17.68 16 18 C 0.60 14.39 7.81 86.66 0.68 15.07 16 19 O -0.57 -16.66 16.89 -4.09 -0.07 -16.73 16 20 C -0.11 -2.16 6.99 40.41 0.28 -1.87 16 21 C 0.03 0.42 11.95 67.32 0.80 1.22 16 22 O -0.20 -2.25 10.73 0.38 0.00 -2.24 16 23 C 0.20 1.90 13.19 130.52 1.72 3.62 16 24 N -0.50 -8.81 11.06 -305.14 -3.37 -12.19 16 25 C 0.02 0.55 6.31 86.40 0.55 1.10 16 26 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.40 19.75 7.90 -92.70 -0.73 19.02 16 28 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 29 H 0.08 2.33 7.69 -2.39 -0.02 2.31 16 30 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.09 1.61 7.75 -2.39 -0.02 1.60 16 32 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.43 7.84 -2.39 -0.02 1.41 16 35 H 0.42 8.26 8.20 -92.71 -0.76 7.50 16 36 H 0.25 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.30 -0.55 8.06 -2.91 -0.02 -0.57 16 38 H 0.06 1.89 7.53 -2.39 -0.02 1.87 16 39 H 0.07 2.41 8.09 -2.38 -0.02 2.39 16 Total: -1.00 -79.37 345.00 -3.67 -83.04 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.38 Total: 32.60 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: 7.52 Total: 25.63 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -12.73 Total: -132.75 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -0.11 Total: -54.10 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -79.37 -3.67 -83.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494534656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.023 kcal (2) G-P(sol) polarization free energy of solvation -79.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds