Wall clock time and date at job start Tue Mar 31 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34453 * 125.78388 * 2 1 4 4 C 1.37832 * 107.42189 * 180.14493 * 3 2 1 5 5 C 1.47747 * 126.37234 * 179.87126 * 4 3 2 6 6 N 1.29789 * 123.10464 * 359.73481 * 5 4 3 7 7 C 1.47597 * 108.42503 * 179.58299 * 6 5 4 8 8 C 1.54820 * 102.00842 * 344.92892 * 7 6 5 9 9 H 1.08994 * 111.07407 * 265.47326 * 8 7 6 10 10 C 1.52998 * 111.03871 * 141.53649 * 8 7 6 11 11 N 1.46498 * 109.47005 * 186.55443 * 10 8 7 12 12 C 1.36935 * 119.99874 * 269.72285 * 11 10 8 13 13 H 1.07996 * 120.00392 * 16.03616 * 12 11 10 14 14 C 1.38814 * 120.00054 * 196.03167 * 12 11 10 15 15 N 1.31622 * 119.99955 * 22.38047 * 14 12 11 16 16 Si 1.86799 * 120.00220 * 202.37684 * 14 12 11 17 17 H 1.48502 * 109.47149 * 60.00051 * 16 14 12 18 18 H 1.48503 * 109.47409 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47185 * 300.00236 * 16 14 12 20 20 C 1.46499 * 120.00326 * 90.00327 * 11 10 8 21 21 C 1.50696 * 109.47629 * 84.01615 * 20 11 10 22 22 O 1.20833 * 119.99607 * 0.02562 * 21 20 11 23 23 O 1.34229 * 120.00425 * 180.02562 * 21 20 11 24 24 O 1.34939 * 123.09767 * 179.71169 * 5 4 3 25 25 C 1.41143 * 107.24494 * 359.60594 * 4 3 2 26 26 N 1.30510 * 108.06795 * 0.24221 * 25 4 3 27 27 H 1.09007 * 109.47129 * 270.26331 * 1 2 3 28 28 H 1.08999 * 109.47439 * 30.26777 * 1 2 3 29 29 H 1.08997 * 109.46999 * 150.27393 * 1 2 3 30 30 H 1.07994 * 126.29289 * 0.02562 * 3 2 1 31 31 H 1.08995 * 110.92180 * 226.75392 * 7 6 5 32 32 H 1.08994 * 110.91834 * 103.10800 * 7 6 5 33 33 H 1.08999 * 109.47208 * 66.55597 * 10 8 7 34 34 H 1.08998 * 109.47707 * 306.55369 * 10 8 7 35 35 H 0.96996 * 119.99937 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47140 * 204.02555 * 20 11 10 37 37 H 1.09005 * 109.46817 * 324.01680 * 20 11 10 38 38 H 0.96699 * 116.99805 * 180.02562 * 23 21 20 39 39 H 1.08005 * 125.96951 * 180.20467 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0907 0.0000 4 6 3.5594 0.6565 -0.0033 5 6 4.7657 1.5096 -0.0072 6 7 4.7167 2.8065 -0.0130 7 6 6.0984 3.3255 -0.0052 8 6 6.9113 2.0716 0.3996 9 1 7.0852 2.0477 1.4753 10 6 8.2323 2.0016 -0.3691 11 7 8.8993 0.7300 -0.0789 12 6 9.7753 0.6401 0.9697 13 1 9.7858 1.4052 1.7318 14 6 10.6499 -0.4347 1.0533 15 7 10.9645 -1.1129 -0.0300 16 14 11.3804 -0.9183 2.7031 17 1 10.2873 -1.2714 3.6441 18 1 12.2770 -2.0885 2.5236 19 1 12.1583 0.2208 3.2530 20 6 8.6338 -0.4438 -0.9143 21 6 9.5160 -0.4015 -2.1353 22 8 10.2877 0.5151 -2.2915 23 8 9.4445 -1.3818 -3.0494 24 8 6.0200 1.0120 -0.0047 25 6 3.5319 -0.7546 0.0039 26 7 2.2835 -1.1351 0.0059 27 1 -0.3634 0.0047 1.0277 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5096 30 1 1.9189 2.1183 0.0004 31 1 6.2122 4.1185 0.7340 32 1 6.3887 3.6744 -0.9962 33 1 8.8749 2.8271 -0.0631 34 1 8.0345 2.0723 -1.4387 35 1 11.5753 -1.8641 0.0285 36 1 8.8439 -1.3496 -0.3454 37 1 7.5879 -0.4421 -1.2214 38 1 10.0303 -1.3112 -3.8155 39 1 4.3935 -1.4059 0.0067 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608107034.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:39 Heat of formation + Delta-G solvation = 13.191032 kcal Electronic energy + Delta-G solvation = -25551.012708 eV Core-core repulsion = 21690.780307 eV Total energy + Delta-G solvation = -3860.232401 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37917 -40.44768 -38.64518 -35.78884 -34.39387 -33.65359 -33.13247 -32.12292 -30.88149 -29.36896 -27.53133 -26.89946 -25.28140 -22.79512 -22.39528 -21.32684 -20.78912 -19.95993 -19.57760 -17.47238 -16.87744 -16.59392 -16.34362 -15.68853 -15.59531 -15.12481 -15.05695 -14.46559 -14.21872 -14.09234 -13.77023 -13.39418 -13.25280 -13.01771 -12.93782 -12.81032 -12.56975 -12.00209 -11.58519 -11.47511 -11.37168 -10.90617 -10.84280 -10.79519 -10.52579 -10.21984 -10.06165 -9.97566 -9.83785 -9.65561 -9.27983 -9.14599 -8.56105 -8.17986 -7.08772 -5.93908 -3.27110 1.41517 2.08778 2.22933 3.25697 3.36074 3.42633 3.43611 3.61247 3.92479 4.30456 4.35916 4.41472 4.57627 4.71769 4.82767 4.97466 4.99021 5.09389 5.26077 5.39266 5.40487 5.53711 5.64302 5.67857 5.84839 6.02586 6.13232 6.37359 6.50326 6.56180 6.58177 6.68820 6.76954 6.98473 7.08788 7.47595 7.65817 7.88050 8.08347 8.16017 8.99549 9.44926 9.69121 10.11715 11.16901 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003865 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.462288 B = 7243.218049 C = 7365.750084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.372 5.372 3 C 0.117 3.883 4 C -0.196 4.196 5 C 0.384 3.616 6 N -0.567 5.567 7 C 0.000 4.000 8 C 0.036 3.964 9 H 0.090 0.910 10 C 0.156 3.844 11 N -0.560 5.560 12 C -0.263 4.263 13 H 0.079 0.921 14 C 0.005 3.995 15 N -0.901 5.901 16 Si 0.910 3.090 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.193 3.807 21 C 0.477 3.523 22 O -0.520 6.520 23 O -0.543 6.543 24 O -0.321 6.321 25 C 0.097 3.903 26 N -0.302 5.302 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.188 0.812 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.258 0.742 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.380 0.620 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.582 3.127 -1.119 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.151 5.151 3 C -0.035 4.035 4 C -0.210 4.210 5 C 0.162 3.838 6 N -0.305 5.305 7 C -0.130 4.130 8 C -0.023 4.023 9 H 0.108 0.892 10 C 0.028 3.972 11 N -0.278 5.278 12 C -0.391 4.391 13 H 0.097 0.903 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.739 3.261 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.063 3.937 21 C 0.317 3.683 22 O -0.406 6.406 23 O -0.353 6.353 24 O -0.223 6.223 25 C -0.091 4.091 26 N -0.122 5.122 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.205 0.795 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.235 0.765 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -19.860 2.739 -0.863 20.067 hybrid contribution 2.436 0.240 0.324 2.469 sum -17.424 2.978 -0.539 17.685 Atomic orbital electron populations 1.21932 0.73615 1.04821 1.03702 1.48373 1.07093 1.03928 1.55684 1.22819 0.89840 0.93625 0.97170 1.17922 0.89122 0.92062 1.21850 1.22401 0.84756 0.88808 0.87869 1.75004 1.21207 1.06972 1.27344 1.23973 0.87729 0.98563 1.02754 1.25237 0.92396 0.83319 1.01396 0.89205 1.20888 0.89350 0.90519 0.96484 1.43840 1.48116 1.04522 1.31353 1.19226 1.13164 1.08277 0.98440 0.90280 1.24831 0.97282 0.99984 0.97279 1.69874 1.36263 1.22613 1.25815 0.86248 0.78423 0.77917 0.83496 1.20861 1.21632 1.20950 1.20249 0.92727 0.93585 0.87108 1.25396 0.82899 0.77555 0.82410 1.90498 1.37653 1.36827 1.75642 1.84642 1.63448 1.52621 1.34613 1.87094 1.14290 1.39704 1.81228 1.24206 0.95187 0.93878 0.95878 1.77266 1.01790 1.07611 1.25507 0.90414 0.89175 0.88956 0.79490 0.88969 0.89685 0.90644 0.93362 0.93139 0.86997 0.92195 0.76488 0.78559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.45 59.85 0.69 1.21 16 2 N -0.37 -3.83 3.99 -67.61 -0.27 -4.10 16 3 C 0.12 1.28 11.39 -16.55 -0.19 1.09 16 4 C -0.20 -2.73 6.13 -105.06 -0.64 -3.37 16 5 C 0.38 6.21 7.73 -14.53 -0.11 6.10 16 6 N -0.57 -9.02 11.65 -57.71 -0.67 -9.70 16 7 C 0.00 0.00 7.68 -2.48 -0.02 -0.02 16 8 C 0.04 0.64 4.02 -25.77 -0.10 0.54 16 9 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 10 C 0.16 3.13 5.39 -4.04 -0.02 3.11 16 11 N -0.56 -13.48 1.98 -174.62 -0.35 -13.83 16 12 C -0.26 -6.90 9.66 -15.06 -0.15 -7.05 16 13 H 0.08 2.00 7.92 -52.49 -0.42 1.59 16 14 C 0.00 0.13 4.86 -17.43 -0.08 0.04 16 15 N -0.90 -25.46 9.30 55.49 0.52 -24.94 16 16 Si 0.91 21.34 29.61 -169.99 -5.03 16.31 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 C 0.19 4.56 5.33 -5.20 -0.03 4.53 16 21 C 0.48 11.68 6.54 36.00 0.24 11.92 16 22 O -0.52 -14.37 16.89 -18.76 -0.32 -14.69 16 23 O -0.54 -11.31 13.42 -39.25 -0.53 -11.84 16 24 O -0.32 -5.82 9.61 -16.54 -0.16 -5.98 16 25 C 0.10 1.31 11.97 -17.01 -0.20 1.11 16 26 N -0.30 -3.96 12.51 30.84 0.39 -3.57 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.19 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.09 1.24 7.88 -51.93 -0.41 0.83 16 33 H 0.08 1.47 8.04 -51.93 -0.42 1.06 16 34 H 0.05 0.97 8.03 -51.93 -0.42 0.56 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.11 2.86 6.35 -51.93 -0.33 2.53 16 37 H 0.06 1.28 7.08 -51.93 -0.37 0.92 16 38 H 0.38 6.31 9.10 45.56 0.41 6.73 16 39 H 0.20 2.44 8.06 -52.48 -0.42 2.02 16 LS Contribution 341.95 15.07 5.15 5.15 Total: -1.00 -34.99 341.95 -5.94 -40.93 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.04 Total: 7.06 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: -0.63 Total: 19.20 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.39 Total: -56.14 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.00 Total: -32.51 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.99 -5.94 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608107034.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.121 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds